Search results:
General Information
| Gene_Symbol | Gene_ID | Gene_Name | Chromosome | Alias |
|---|---|---|---|---|
| RAD50 | 10111 | RAD50 homolog (S. cerevisiae)  | 5 | NBSLD; RAD502; hRad50  |
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 16905549    | 2006 | Cell line : - Source : - Sample Type : - No. of Sample : - Stage : - | - | Down-regulation | - | - |
| 11429044    | 2001 | Cell line : 8 CRC Cell line Source : - Sample Type : - No. of Sample : - Stage : - | - | Mutation | - | RAD50 frameshift mutations may play a role in the tumorigenesis of MSI-H colorectal cancers. Here authors report that 60% (3 out of 5) of human colorectal cancer cell lines exhibiting a high frequency of MSI (MSI-H) and 46% (6 out of 13) of MSI-H primary colorectal tumors had mutations in the (A)9 repeat of RAD50 recombinational repair gene. |
| 16421660    | 2006 | Cell line : - Source : - Sample Type : CRC tumor and normal tissue No. of Sample : 31 Stage : TNM Stage I- IV | - | Mutation | - | Thirty-one colorectal cancers from patients with hereditary nonpolyposis colorectal cancer at different clinicopathologic stages were analyzed for frameshift mutation in 18 genes. Mutations of the hMSH3, TCF4, CASP5, RIZ, RAD50, and MBD4 genes were comparatively frequent (>35 percent) in all stages. |
| 17534377    | 2007 | Cell line : - Source : - Sample Type : CRC tumor and normal tissue No. of Sample : 33 Stage : - | Immunohistochemistry, High-resolution fluorescent-labelling method, Genomic sequencing | Mutation | - | The MRE11/RAD50/NBS1 complex destabilization in Lynch-syndrome patients. Biallelic MRE11 alterations with simultaneously developed RAD50 mutations impaired the protein expressions with different intensity and location in tumour. Absence of significant association between type B MSI and MRE11 or RAD50 mutations in tumours of Lynch-syndrome patients. |
| 22997602    | 2012 | Cell line : - Source : - Sample Type : - No. of Sample : - Stage : - | - | Mutation | - | - |
| 17384679    | 2007 | Cell line : - Source : - Sample Type : CRC tumor and normal tissue No. of Sample : Primary CRC 268, the corresponding distant 69) and adjacent normal mucosa 138, and lymph node metastasis 44 Stage : TNM Stage I-IV | Immunohistochemistry | Mutation & Down-regulation | - | Mutations in MRE11 and/or RAD50 were observed in the vast majority of the tumours and resulted in the concomitant loss of immunohistochemical expression of both proteins. |
| 18219098    | 2008 | Cell line : - Source : - Sample Type : - No. of Sample : - Stage : - | Immunohistochemistry and PCR-SSCP-DNA sequencing. | Mutation & Up-regulation | - | hRAD50 expression was examined in primary CRC (n=268), the corresponding distant (n=69) and adjacent normal mucosa (n=138), and lymph node metastasis (n=44) by immunohistochemistry. Frameshift mutations of (A)(9) at coding region of hRAD50 were only found in MSI CRCs. Increased hRAD50 expression in MSS CRCs while hRAD50 mutation may be involved in the development of MSI CRCs. |
| 18830935    | 2008 | Cell line : - Source : - Sample Type : CRC tumor and normal tissue No. of Sample : Primary CRCs 208, the corresponding distant 41 and adjacent normal mucosa 130, and lymph node metastases 26 patient samples Stage : TNM Stage I-III | Immunohistochemistry | Up-regulation | - | RAD50/MRE11/NBS1 proteins interacted with each other, which had different clinicopathological significance in MSS and MSI CRCs. |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | - |
| Description | The protein encoded by this gene is highly similar to Saccharomyces cerevisiae Rad50, a protein involved in DNA double-strand break repair. This protein forms a complex with MRE11 and NBS1. The protein complex binds to DNA and displays numerous enzymatic activities that are required for nonhomologous joining of DNA ends. This protein, cooperating with its partners, is important for DNA double-strand break repair, cell cycle checkpoint activation, telomere maintenance, and meiotic recombination. Knockout studies of the mouse homolog suggest this gene is essential for cell growth and viability. Mutations in this gene are the cause of Nijmegen breakage syndrome-like disorder.[provided by RefSeq, Apr 2010]   |
| Chromosome | 5 |
| Location | 5q31 |
| Start | 132556924   |
| End | 132644621   |
| Strand | -   |
| Gene Sequence |    Download   Select all |
| Length | 87698   |
| OMIM ID | 604040    |
| HGNC ID | HGNC:9816    |
| Unigene ID | Hs.633509    |
| Ensembl ID | ENSG00000113522    |
| PharmGKB ID | -    |
mRNA Information
| mRNA ID | NM_005732.3 |
|---|---|
| Exon | join(1..530,2361..2444,18854..19005,22394..22579, 22939..23143,30639..30767,31001..31166,31764..31957, 32708..32914,34301..34483,34954..35111,37946..38121, 38650..38887,46377..46566,46997..47123,47883..48076, 51692..51802,52194..52286,52360..52473,59080..59207, 61147..61371,80192..80277,81158..81300,83749..83882, 85255..87698)   | mRNA Sequence |    Download   Select all |
| Length | 6597   |
CDS Information
| Location | join(402..530,2361..2444,18854..19005,22394..22579, 22939..23143,30639..30767,31001..31166,31764..31957, 32708..32914,34301..34483,34954..35111,37946..38121, 38650..38887,46377..46566,46997..47123,47883..48076, 51692..51802,52194..52286,52360..52473,59080..59207, 61147..61371,80192..80277,81158..81300,83749..83882, 85255..85441) |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | CCDS34233.1 |    
Protein Information
| Protein ID | NP_005723.2 |
|---|---|
| Protein Name | RAD50 homolog (S. cerevisiae) |
| Molecular Wt. (Da) | 153762 |
| Protein Sequence |    Download   Select all |
| Length | 1312   |
| Uniprot ID | O15197 |    
| Ensembl Protein ID | ENSP00000376684   |    
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| S | Phosphorylation | 635 |
| T | Phosphorylation | 690 |
| S | Phosphorylation | 496 |
| T | Phosphorylation | 551 |
| S | Phosphorylation | 640;- |
| S | Phosphorylation | 501;- |
| K | Acetylation | 959 |
| K | Acetylation | 820 |
| K | Acetylation | 1285 |
| K | Acetylation | 1146 |
| K | Acetylation | 264 |
| K | Acetylation | 125 |
| S | Phosphorylation | 557 |
| S | Phosphorylation | 418 |
| S | Phosphorylation | 560 |
| S | Phosphorylation | 421 |
| T | Phosphorylation | 536 |
| T | Phosphorylation | 397 |
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING)      View   
| Interactant Gene ID (Source: HPRD) | Gene Symbol | HPRD ID | Ref Seq ID | Technique | References |
|---|---|---|---|---|---|
| 4361 |    MRE11A |    2889 |    NP_005582.1 |    in vitro;in vivo |    87   566   421   088   888   800   000   000    |
| 4683 |    NBN |    4050 |    NP_002476.2 |    in vitro;in vivo;yeast 2-hybrid |    97   052   711   123   895   100   000   000    |
| 60561 |    RINT1 |    15250 |    NP_068749.3 |    in vivo |    11096100    |
Pathway Information
| Pathway Name | Pathway ID |
|---|---|
| Homologous recombination |    hsa03440 |    
| Non-homologous end-joining |    hsa03450 |    
Structure Information
No matching records could be found.
Domain Information
| ID | Location | Description |
|---|---|---|
| cd03240 | 1195-1297  | ABC_Rad50 |
| cl21455 | 1195-1297  | P-loop_NTPase superfamily |
| cd03240 | 4-166  | ABC_Rad50 |
| cl21455 | 4-166  | P-loop_NTPase superfamily |
| cd03227 | 1197-1298  | ABC_Class2 |
| pfam13558 | 1183-1251  | SbcCD_C |
| cd03227 | Jun-85  | ABC_Class2 |
| cd00267 | 1202-1283  | ABC_ATPase |
| pfam13476 | 6-219  | AAA_23 |
| cd03226 | 1201-1273  | ABC_cobalt_CbiO_domain2 |
| cd03221 | 1202-1275  | ABCF_EF-3 |
| cd03225 | 1202-1291  | ABC_cobalt_CbiO_domain1 |
| cd03255 | 1227-1280  | ABC_MJ0796_LolCDE_FtsE |
| cd03229 | 1202-1278  | ABC_Class3 |
| pfam04423 | 658-713  | Rad50_zn_hook |
| cl04509 | 658-713  | Rad50_zn_hook superfamily |
| cd03228 | 1202-1269  | ABCC_MRP_Like |
| cd03263 | 34-105  | ABC_subfamily_A |
| cd03278 | Apr-50  | ABC_SMC_barmotin |
| cd03257 | 1214-1270  | ABC_NikE_OppD_transporters |
| cd03245 | 1195-1279  | ABCC_bacteriocin_exporters |
| cd03246 | 1202-1269  | ABCC_Protease_Secretion |
| cd03279 | 1202-1275  | ABC_sbcCD |
| cd03214 | 1214-1270  | ABC_Iron-Siderophores_B12_Hemin |
| cd03235 | 1190-1270  | ABC_Metallic_Cations |
| pfam13304 | 1123-1275  | AAA_21 |
| pfam13304 | 31-57  | AAA_21 |
| cd03230 | 34-82  | ABC_DR_subfamily_A |
| cd03219 | 31-63  | ABC_Mj1267_LivG_branched |
| cd03265 | 34-97  | ABC_DrrA |
| cd03230 | 1200-1277  | ABC_DR_subfamily_A |
| cd03299 | 1214-1278  | ABC_ModC_like |
| cd03253 | 1192-1269  | ABCC_ATM1_transporter |
| cd03261 | 1214-1274  | ABC_Org_Solvent_Resistant |
| cd03239 | Apr-52  | ABC_SMC_head |
| cd03242 | 25-83  | ABC_RecF |
| TIGR01189 | 1202-1249  | ccmA |
| TIGR00606 | 2-1312  | rad50 |
| COG0419 | 416-1275  | SbcC |
| COG0419 | 3-770  | SbcC |
| COG1196 | 183-1017  | Smc |
| COG1196 | 241-1128  | Smc |
| TIGR02168 | 190-1012  | SMC_prok_B |
| TIGR02168 | 181-1002  | SMC_prok_B |
| PRK03918 | 417-952  | PRK03918 |
| TIGR02169 | 4-1016  | SMC_prok_A |
| COG1196 | 187-932  | Smc |
| PRK03918 | 3-810  | PRK03918 |
| TIGR02169 | 393-1118  | SMC_prok_A |
| COG1196 | 425-1269  | Smc |
| COG1196 | 548-935  | Smc |
| pfam02463 | 251-1297  | SMC_N |
| TIGR02168 | 473-1171  | SMC_prok_B |
| TIGR00618 | 26-925  | sbcc |
| TIGR02169 | 401-745  | SMC_prok_A |
| TIGR02169 | 187-909  | SMC_prok_A |
| pfam05483 | 402-1084  | SCP-1 |
| PRK01156 | 427-969  | PRK01156 |
| PRK03918 | 447-1272  | PRK03918 |
| TIGR02168 | 749-1111  | SMC_prok_B |
| TIGR02168 | 187-537  | SMC_prok_B |
| pfam02463 | 170-1001  | SMC_N |
| COG5185 | 239-530  | HEC1 |
| COG1196 | 184-529  | Smc |
| COG1122 | 1202-1283  | EcfA2 |
| TIGR04523 | 449-1135  | Mplasa_alph_rch |
| pfam12128 | 241-936  | DUF3584 |
| TIGR04523 | 183-770  | Mplasa_alph_rch |
| PRK01156 | 25-744  | PRK01156 |
| TIGR04523 | 213-960  | Mplasa_alph_rch |
| COG4942 | 710-940  | EnvC |
| PRK01156 | 487-1272  | PRK01156 |
| TIGR00618 | 446-1102  | sbcc |
| COG1136 | 1202-1292  | LolD |
| COG1196 | 170-487  | Smc |
| COG0488 | 1188-1295  | Uup |
| PRK02224 | 208-779  | PRK02224 |
| pfam01576 | 264-945  | Myosin_tail_1 |
| COG4988 | 1192-1271  | CydD |
| TIGR02857 | 1192-1279  | CydD |
| COG4372 | 575-927  | COG4372 |
| PTZ00121 | 219-1000  | PTZ00121 |
| COG4372 | 744-944  | COG4372 |
| COG1120 | 1202-1270  | FepC |
| pfam12128 | 419-1005  | DUF3584 |
| COG4372 | 431-715  | COG4372 |
| TIGR01612 | 214-1149  | 235kDa-fam |
| COG4942 | 273-493  | EnvC |
| TIGR01612 | 421-1178  | 235kDa-fam |
| TIGR02169 | 170-520  | SMC_prok_A |
| pfam13166 | 580-967  | AAA_13 |
| pfam05483 | 164-943  | SCP-1 |
| PRK05771 | 421-659  | PRK05771 |
| pfam13514 | 288-920  | AAA_27 |
| COG5022 | 173-647  | COG5022 |
| COG4372 | 257-486  | COG4372 |
| COG1511 | 585-941  | YhgE |
| COG1131 | 1214-1277  | CcmA |
| COG4372 | 797-985  | COG4372 |
| PHA02562 | 608-768  | 46 |
| PRK05771 | 171-284  | PRK05771 |
| PRK11281 | 685-1000  | PRK11281 |
| TIGR03185 | 592-953  | DNA_S_dndD |
| PHA02562 | 693-994  | 46 |
| COG0488 | 1076-1273  | Uup |
| pfam13514 | 34-929  | AAA_27 |
| TIGR01842 | 1192-1269  | type_I_sec_PrtD |
| PTZ00121 | 173-772  | PTZ00121 |
| TIGR03185 | 561-906  | DNA_S_dndD |
| pfam01496 | 691-966  | V_ATPase_I |
| COG1132 | 1192-1275  | MdlB |
| pfam09726 | 676-932  | Macoilin |
| PHA02562 | 825-1008  | 46 |
| pfam12128 | 420-989  | DUF3584 |
| pfam07888 | 561-933  | CALCOCO1 |
| TIGR04211 | 838-934  | SH3_and_anchor |
| PRK02224 | 190-620  | PRK02224 |
| TIGR03185 | 252-570  | DNA_S_dndD |
| COG4477 | 695-998  | EzrA |
| COG1579 | 182-323  | COG1579 |
| TIGR00618 | 183-554  | sbcc |
| pfam09787 | 579-947  | Golgin_A5 |
| pfam07888 | 721-1065  | CALCOCO1 |
| COG5391 | 361-655  | COG5391 |
| COG4172 | 1214-1270  | YejF |
| TIGR01000 | 687-998  | bacteriocin_acc |
| TIGR04523 | 224-944  | Mplasa_alph_rch |
| COG4987 | 1192-1275  | CydC |
| PTZ00121 | 170-619  | PTZ00121 |
| pfam05622 | 470-994  | HOOK |
| COG4618 | 1192-1269  | ArpD |
| COG5185 | 285-651  | HEC1 |
| COG4372 | 170-378  | COG4372 |
| COG4942 | 571-770  | EnvC |
| PRK12704 | 713-911  | PRK12704 |
| PRK13548 | 31-61  | hmuV |
| pfam01496 | 510-773  | V_ATPase_I |
| COG3264 | 799-941  | MscK |
| PRK10584 | 1214-1271  | PRK10584 |
| TIGR02231 | 821-927  | TIGR02231 |
| TIGR02211 | 1214-1279  | LolD_lipo_ex |
| pfam10174 | 172-835  | Cast |
| COG1124 | 1214-1275  | DppF |
| TIGR04211 | 825-927  | SH3_and_anchor |
| pfam10186 | 797-932  | Atg14 |
| COG3910 | 27-70  | COG3910 |
| COG5185 | 645-991  | HEC1 |
| pfam05911 | 524-922  | DUF869 |
| TIGR02971 | 795-925  | heterocyst_DevB |
| smart00787 | 821-954  | Spc7 |
| PRK10790 | 1202-1285  | PRK10790 |
| TIGR01843 | 328-492  | type_I_hlyD |
| PRK12704 | 201-365  | PRK12704 |
| COG1579 | 208-380  | COG1579 |
| COG0444 | 1227-1270  | DppD |
| pfam07111 | 328-927  | HCR |
| PRK11637 | 710-941  | PRK11637 |
| pfam05622 | 125-528  | HOOK |
| COG3842 | 1214-1270  | PotA |
| COG1127 | 1171-1272  | MlaF |
| PRK11281 | 689-1052  | PRK11281 |
| PRK11629 | 1214-1279  | lolD |
| PRK13648 | 1202-1270  | cbiO |
| pfam00901 | 222-328  | Orbi_VP5 |
| pfam05557 | 230-765  | MAD |
Ontology Information
| HPRD ID | 2563 |    
|---|---|
| Molecular Class | DNA binding protein |
| Molecular Function | Receptor signaling complex scaffold activity (GO:0030159) |
| Biological Process | Cell communication (GO:0007154); Signal transduction (GO:0007165)   |
Drug Information
No matching records could be found.
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    
