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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
CLN3 1201 ceroid-lipofuscinosis, neuronal 3  16JNCL 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
24556023   2014Cell line : HCT116

Source : -

Sample Type : -

No. of Sample : -

Stage : -

Sequence-specific siRNA silencing, real time RT-PCR, Western BlottingUp-regulation- CLN3 down-regulation with RNA interference can inhibit proliferation, apoptosis, and cell cycle progression of colorectal cancer cells.


Gene Details



NC_000016.9 (28488600..28505897, complement)

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Gene Type protein coding
Gene Family -
Description This gene encodes a protein that is involved in lysosomal function. Mutations in this, as well as other neuronal ceroid-lipofuscinosis (CLN) genes, cause neurodegenerative diseases commonly known as Batten disease or collectively known as neuronal ceroid lipofuscinoses (NCLs). Many alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jul 2008]  
Chromosome 16
Location 16p12
Start 28488600  
End 28505897  
Strand -  
Gene Sequence

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Length 17298  
OMIM ID 607042   
HGNC ID HGNC:2074   
Unigene ID Hs.534667   
Ensembl ID ENSG00000188603   
PharmGKB ID PA26601   

mRNA Information


mRNA ID NM_001286109.1
Exon join(221..589,2917..3013,4562..4641,4762..4847,5653..5725, 5813..5956,8185..8297,9631..9677,9758..9826,9921..9976, 10105..10198,14426..14566,14668..14839,25401..25650)  
mRNA Sequence

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Length 1791  



CDS Information


   
Location407..1489
CDS Sequence

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CCDS ID CCDS10632.1



Protein Information


      
Protein IDNP_001273038.1
Protein Nameceroid-lipofuscinosis, neuronal 3
Molecular Wt. (Da)39037
Protein Sequence

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Length 360  
Uniprot IDP43354
Ensembl Protein ID ENSP00000344479  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation12
SPhosphorylation14
SPhosphorylation12;-
SPhosphorylation14;-
TPhosphorylation19
TPhosphorylation19

Enzyme Information


No matching records could be found.

PPi Information


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No matching records from HPRD source could be found.

Pathway Information


      
Pathway Name Pathway ID
Lysosome hsa04142


Structure Information


No matching records could be found.

Domain Information




ID Location Description
pfam0248737-438  CLN3
cl1543037-438  Nucleoside_tran superfamily


Ontology Information


   
HPRD ID7198
Molecular ClassChaperone
Molecular FunctionCell adhesion molecule activity (GO:0005194)
Biological ProcessCell communication (GO:0007154)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO