Search results:
General Information
| Gene_Symbol | Gene_ID | Gene_Name | Chromosome | Alias |
|---|---|---|---|---|
| CLN3 | 1201 | ceroid-lipofuscinosis, neuronal 3  | 16 | JNCL  |
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 24556023    | 2014 | Cell line : HCT116 Source : - Sample Type : - No. of Sample : - Stage : - | Sequence-specific siRNA silencing, real time RT-PCR, Western Blotting | Up-regulation | - | CLN3 down-regulation with RNA interference can inhibit proliferation, apoptosis, and cell cycle progression of colorectal cancer cells. |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | - |
| Description | This gene encodes a protein that is involved in lysosomal function. Mutations in this, as well as other neuronal ceroid-lipofuscinosis (CLN) genes, cause neurodegenerative diseases commonly known as Batten disease or collectively known as neuronal ceroid lipofuscinoses (NCLs). Many alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jul 2008]   |
| Chromosome | 16 |
| Location | 16p12 |
| Start | 28488600   |
| End | 28505897   |
| Strand | -   |
| Gene Sequence |    Download   Select all |
| Length | 17298   |
| OMIM ID | 607042    |
| HGNC ID | HGNC:2074    |
| Unigene ID | Hs.534667    |
| Ensembl ID | ENSG00000188603    |
| PharmGKB ID | PA26601    |
mRNA Information
| mRNA ID | NM_001286109.1 |
|---|---|
| Exon | join(221..589,2917..3013,4562..4641,4762..4847,5653..5725, 5813..5956,8185..8297,9631..9677,9758..9826,9921..9976, 10105..10198,14426..14566,14668..14839,25401..25650)   | mRNA Sequence |    Download   Select all |
| Length | 1791   |
CDS Information
| Location | 407..1489 |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | CCDS10632.1 |    
Protein Information
| Protein ID | NP_001273038.1 |
|---|---|
| Protein Name | ceroid-lipofuscinosis, neuronal 3 |
| Molecular Wt. (Da) | 39037 |
| Protein Sequence |    Download   Select all |
| Length | 360   |
| Uniprot ID | P43354 |    
| Ensembl Protein ID | ENSP00000344479   |    
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| S | Phosphorylation | 12 |
| S | Phosphorylation | 14 |
| S | Phosphorylation | 12;- |
| S | Phosphorylation | 14;- |
| T | Phosphorylation | 19 |
| T | Phosphorylation | 19 |
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING)      View   
No matching records from HPRD source could be found.
Pathway Information
| Pathway Name | Pathway ID |
|---|---|
| Lysosome |    hsa04142 |    
Structure Information
No matching records could be found.
Domain Information
| ID | Location | Description |
|---|---|---|
| pfam02487 | 37-438  | CLN3 |
| cl15430 | 37-438  | Nucleoside_tran superfamily |
Ontology Information
| HPRD ID | 7198 |    
|---|---|
| Molecular Class | Chaperone |
| Molecular Function | Cell adhesion molecule activity (GO:0005194) |
| Biological Process | Cell communication (GO:0007154)   |
Drug Information
No matching records could be found.
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    
