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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
SHISA3 152573 shisa family member 3  4hShisa3 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
25968618   2015Cell line : 11 colorectal cancer cell lines

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : 127 pairs of primary CRC tissues and 52 colorectal carcinomas

Stage : -

RT-PCR,real time RT-PCR, bisulfite sequencing and pyrosequencingMethylation-SHISA3 gene is epigenetically inactivated in a substantial fraction of CRC, and its hypermethylation is of prognostic significance in predicting clinical outcome.


Gene Details



NC_000004.11 (42399856..42404504)

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Gene Type protein coding
Gene Family Shisa homologs
Description -  
Chromosome 4
Location 4p13
Start 42399856  
End 42404504  
Strand +  
Gene Sequence

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Length 4649  
OMIM ID -   
HGNC ID HGNC:25159   
Unigene ID Hs.370904   
Ensembl ID ENSG00000178343   
PharmGKB ID PA162403293   

mRNA Information


mRNA ID ?NM_001080505.1
Exon  
mRNA Sequence

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Length  



CDS Information


   
Location
CDS Sequence

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CCDS ID CCDS33979.1



Protein Information


      
Protein IDNP_001073974.1
Protein Nameshisa family member 3
Molecular Wt. (Da)0
Protein Sequence

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Length 238  
Uniprot IDQ8IZJ1
Ensembl Protein ID ENSP00000334329  



Post-translational Modification Information (Source : HPRD)


No matching records could be found.

Enzyme Information


No matching records could be found.

PPi Information


No STRING Network could be found.

No matching records from HPRD source could be found.

Pathway Information


No matching records could be found.

Structure Information


No matching records could be found.

Domain Information




ID Location Description
pfam1390823-196  Shisa
cl1646823-196  Shisa superfamily


Ontology Information


   
HPRD ID8487
Molecular ClassUnclassified
Molecular FunctionReceptor activity (GO:0004872)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO