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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
SPG20 23111 spastic paraplegia 20 (Troyer syndrome)  13KIAA0610, TAHCCP1 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
23372428   2013Cell line : -

Source : First Affiliated Hospital of Xi'an Jiaotong University

Sample Type : CRC tumor and normal tissue

No. of Sample : 96 CRC patients and 30 healthy

Stage : -

Methylation-specific PCRHypermethylation-Hypermethylation in Spastic paraplegia-20 promoter is a highly specific and sensitive biomarker for screening colorectal cancer in stool samples as a noninvasive method.

Hypermethylated Spastic paraplegia-20 occurs in 85.4% (82/96) of patients with colorectal cancer in the tissue samples. In the stool samples, the results indicate 80.2% (77/96) sensitivity and 100% (30/30) specificity of the test for detecting colorectal cancer by using the stool samples as a noninvasive method.

21499309   2011Cell line : -

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : 179 colorectal carcinomas (47 MSI; 26% and 132 MSS; 74%), 111 adenomas and 110 normal mucosa samples

Stage : TNM Stage I-IV

Methylation-specific PCR,Bisulfite sequencing, RT-PCR, Confocal fluorescence microscopyHypermethylation-SPG20 promoter hypermethylation as a biomarker suitable for non-invasive detection of colorectal cancer, and a possible mechanism for cytokinesis arrest in colorectal tumorigenesis.

SPG20 promoter hypermethylation resulted in loss of mRNA expression in various cancer types and subsequent depletion of Spartin.


Gene Details



Chromosome 13 - NC_000013.11 (36301638..36370180, complement)

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Gene Type protein coding
Gene Family
Description This gene encodes a protein containing a MIT (Microtubule Interacting and Trafficking molecule) domain, and is implicated in regulating endosomal trafficking and mitochondria function. The protein localizes to mitochondria and partially co-localizes with microtubules. Stimulation with epidermal growth factor (EGF) results in protein translocation to the plasma membrane, and the protein functions in the degradation and intracellular trafficking of EGF receptor. Multiple alternatively spliced variants, encoding the same protein, have been identified. Mutations associated with this gene cause autosomal recessive spastic paraplegia 20 (Troyer syndrome).  
Chromosome 13
Location 13q13.1
Start 36301638  
End 36370180  
Strand -  
Gene Sequence

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Length 68543  
OMIM ID 607111   
HGNC ID HGNC:18514   
Unigene ID Hs.440414   
Ensembl ID ENSG00000133104   
PharmGKB ID -   

mRNA Information


mRNA ID NM_001142294.1
Exon join(1..92,34349..35160,38585..38782,40664..40819, 43483..43606,55760..55954,57704..57862,57946..58036, 65549..68543)  
mRNA Sequence

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Length 4838  



CDS Information


   
Location join(34351..35160,38585..38782,40664..40819,43483..43606, 55760..55954,57704..57862,57946..58036,65549..65816)
CDS Sequence

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CCDS ID CCDS9356.1



Protein Information


      
Protein IDNP_001135766.1
Protein Namespastic paraplegia 20 (Troyer syndrome)
Molecular Wt. (Da)72702
Protein Sequence

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Length 666  
Uniprot IDP17275
Ensembl Protein ID ENSP00000303315  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation470

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                             
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
2060EPS158968NP_001972.1in vitro;yeast 2-hybrid16036216   
7846TUBA1A3959NP_006000.2in vitro16945107   
9372ZFYVE94782NP_004790.2yeast 2-hybrid15231748   


Pathway Information


      
Pathway Name Pathway ID
Endocytosis hsa04144


Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd0267916-95  MIT_spastin
cl0029916-95  MIT superfamily
pfam06911427-613  Senescence
cl06118427-613  Senescence superfamily
smart0074516-92  MIT
pfam0421219-95  MIT
cd0265618-104  MIT
pfam10310316-466  DUF2413
PHA03307109-179  PHA03307


Ontology Information


   
HPRD ID1414
Molecular ClassUnclassified
Molecular FunctionCell adhesion molecule activity (GO:0005194)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO