Search results:


General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
ATG4B 23192 autophagy related 4B, cysteine peptidase  2Apg4B, KIAA0943, DKFZp586D1822, AUTL1 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
24991826   2014Cell line : -

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : -

Stage : -

-Up-regulation-ATG4B is a potential biomarker and drug target for cancer therapy.

ATG4B independently plays a role as a positive regulator on tumor proliferation and a negative regulator on autophagy in colorectal cancer cells.

ATG4B expression was significantly increased in tumor cells of colorectal cancer patients compared with adjacent normal cells.


Gene Details



Chromosome 2 - NC_000002.12 (241637612..241673857)

View Larger Image
   
Gene Type protein coding
Gene Family
Description Autophagy is the process by which endogenous proteins and damaged organelles are destroyed intracellularly. Autophagy is postulated to be essential for cell homeostasis and cell remodeling during differentiation, metamorphosis, non-apoptotic cell death, and aging. Reduced levels of autophagy have been described in some malignant tumors, and a role for autophagy in controlling the unregulated cell growth linked to cancer has been proposed. This gene encodes a member of the autophagin protein family. The encoded protein is also designated as a member of the C-54 family of cysteine proteases. Alternate transcriptional splice variants, encoding different isoforms, have been characterized.  
Chromosome 2
Location 2q37.3
Start 241637612  
End 241673857  
Strand +  
Gene Sequence

   Download   Select all

Length 36246  
OMIM ID 611338   
HGNC ID HGNC:20790   
Unigene ID Hs.283610   
Ensembl ID ENSG00000168397   
PharmGKB ID -   

mRNA Information


mRNA ID NM_178326.2
Exon join(1..113,13399..13500,13653..13724,15901..15999, 16935..17036,17660..17732,21497..21576,29034..29227, 30532..30610,30929..31074,33115..33171,33701..33814, 34580..36246)  
mRNA Sequence

   Download   Select all

Length 2892  



CDS Information


   
Location join(104..113,13399..13500,13653..13724,15901..15999, 16935..17036,17660..17732,21497..21576,29034..29227, 30532..30610,30929..31074,33115..33171,33701..33830, 34580..34653)
CDS Sequence

   Download   Select all

CCDS ID -



Protein Information


      
Protein IDNP_037457.3
Protein Nameautophagy related 4B, cysteine peptidase
Molecular Wt. (Da)44163
Protein Sequence

   Download   Select all

Length 393  
Uniprot IDP17535
Ensembl Protein ID ENSP00000252818  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation383;-
SPhosphorylation392;-

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

               
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
79686C14orf13916606NP_078909.1yeast 2-hybrid16169070   


Pathway Information


      
Pathway Name Pathway ID
Regulation of autophagy hsa04140


Structure Information


PDB ID2CY7
Resolution1.9
MethodX-RAY DIFFRACTION
Chains A  
Molecule Cysteine protease APG4B  
Model View



Domain Information




ID Location Description
pfam0341637-337  Peptidase_C54
cl0405637-337  Peptidase_C54 superfamily


Ontology Information


   
HPRD ID9004
Molecular ClassCysteine protease
Molecular FunctionReceptor regulator activity (GO:0030545)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO