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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
GBP1 2633 Guanylate binding protein 1, interferon-inducible, 67kDa  1- 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
20454519   2010Cell line : -

Source : -

Sample Type : -

No. of Sample : 388

Stage : -

Proliferation Assay, Soft Agar Assay,Western Blotting and ImmunohistochemistryUnknown-GBPs might be considered as potent members in an innate, IFN-gamma-induced antitumoral defense system.

GBP-1 has been shown to exert antiangiogenic activities and was described as a prognostic marker in colorectal carcinomas.

18697200   2008Cell line : -

Source : Department of Pathology of Wrocaw Medical University.

Sample Type : -

No. of Sample : -

Stage : -

ImmunohistochemistryUp-regulation-GBP-1 was strongly expressed in endothelial cells and immune cells in the desmoplastic stroma of 32% of CRC .

22968445   2012Cell line : -

Source : -

Sample Type : -

No. of Sample : -

Stage : -

Laser capture microdissection,FFPE-FASP,SAX fractionation,LC-MSMS,Label-freequantitation.Up-regulation3-


Gene Details



Chromosome: 1; NC_000001.10 (89517987..89531043, complement)

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Gene Type protein coding
Gene Family -
Description Guanylate binding protein expression is induced by interferon. Guanylate binding proteins are characterized by their ability to specifically bind guanine nucleotides (GMP, GDP, and GTP) and are distinguished from the GTP-binding proteins by the presence of 2 binding motifs rather than 3. [provided by RefSeq, Jul 2008]  
Chromosome 1
Location 1p22.2
Start 89052304  
End 89065360  
Strand -  
Gene Sequence

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Length 13057  
OMIM ID 600411   
HGNC ID HGNC:4182   
Unigene ID Hs.62661    
Ensembl ID ENSG00000117228   
PharmGKB ID -   

mRNA Information


mRNA ID NM_002053.2
Exon join(1..201,2108..2316,5037..5164,5935..6044,6318..6520, 7127..7369,8227..8507,9133..9345,10146..10248, 10486..10679,11893..13057)  
mRNA Sequence

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Length 3050  



CDS Information


   
Location join(2127..2316,5037..5164,5935..6044,6318..6520, 7127..7369,8227..8507,9133..9345,10146..10248, 10486..10679,11893..12006)
CDS Sequence

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CCDS ID CCDS718.1



Protein Information


      
Protein IDNP_002044.2
Protein NameGuanylate binding protein 1, interferon-inducible, 67kDa
Molecular Wt. (Da)67800
Protein Sequence

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Length 592  
Uniprot IDO00238
Ensembl Protein ID ENSP00000264568  



Post-translational Modification Information (Source : HPRD)


Residue Type site
CPrenylation589

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

No matching records from HPRD source could be found.

Pathway Information


No matching records could be found.

Structure Information


PDB ID1DG3
Resolution1.8
MethodX-RAY DIFFRACTION
Chains A  
Molecule PROTEIN (INTERFERON-INDUCED GUANYLATE-BINDING PROTEIN 1)  
Model View



Domain Information




ID Location Description
cd0185132-276  GBP
cl2145532-276  P-loop_NTPase superfamily
pfam0226318-282  GBP
cl2289118-282  GBP superfamily
cd0088242-117  Ras_like_GTPase
cd07648436-559  F-BAR_FCHO
cl12013436-559  BAR superfamily
pfam12203478-559  HDAC4_Gln
cl13614478-559  ClassIIa_HDAC_Gln-rich-N superfamily
cd10149479-558  ClassIIa_HDAC_Gln-rich-N
pfam0587949-120  RHD3
cd10162479-567  ClassIIa_HDAC4_Gln-rich-N
TIGR01541435-568  tape_meas_lam_C
cl19901435-568  Tape_meas_lam_C superfamily
pfam02841284-580  GBP_C
COG0419348-588  SbcC
PTZ00121381-577  PTZ00121
pfam12297374-568  EVC2_like
pfam04111505-585  APG6
pfam09731471-568  Mitofilin
COG1842437-583  PspA
COG0419321-592  SbcC
PRK12704434-591  PRK12704
COG5019435-557  CDC3
PTZ00121438-585  PTZ00121
TIGR03319457-571  RNase_Y
TIGR00618445-579  sbcc
pfam11600457-582  CAF-1_p150
COG1196438-585  Smc
pfam09726418-582  Macoilin
COG4372291-563  COG4372
COG4942296-588  EnvC
COG5394371-554  COG5394
pfam07111433-543  HCR
TIGR02169465-588  SMC_prok_A
COG5185416-587  HEC1
pfam12128438-586  DUF3584
pfam11600484-588  CAF-1_p150
PTZ00121437-563  PTZ00121


Ontology Information


   
HPRD ID4457
Molecular ClassEnzyme: GTPase
Molecular FunctionReceptor signaling protein serine/threonine kinase activity (GO:0004702)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO