Search results:
General Information
| Gene_Symbol | Gene_ID | Gene_Name | Chromosome | Alias |
|---|---|---|---|---|
| GTF2F2 | 2963 | General transcription factor IIF, polypeptide 2, 30kDa | 13 | BTF4; RAP30; TF2F2; TFIIF |
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 22968445 | 2012 | Cell line : - Source : Department of Pathology of Wrocaw Medical University. Sample Type : - No. of Sample : - Stage : - | Laser capture microdissection,FFPE-FASP,SAX fractionation, LC-MSMS,Label-freequantitation. | Up-regulation | 2.3 | - |
Gene Details
| Gene Type | protein coding |
|---|---|
| Gene Family | General transcription factors |
| Description | - |
| Chromosome | 13 |
| Location | 13q14 |
| Start | 45120464 |
| End | 45284889 |
| Strand | + |
| Gene Sequence | Download Select all |
| Length | 164426 |
| OMIM ID | 189969 |
| HGNC ID | HGNC:4653 |
| Unigene ID | Hs.654582 |
| Ensembl ID | ENSG00000188342 |
| PharmGKB ID | - |
mRNA Information
| mRNA ID | XM_011535052.1 |
|---|---|
| Exon | join(1..258,16270..16343,29307..29325,31224..31368, 62938..63015,86961..87042,132408..132507,146770..146913, 162979..164426) | mRNA Sequence | Download Select all |
| Length | 1469 |
CDS Information
| Location | join(193..258,16270..16343,29307..29325,31224..31368, 62938..63015,86961..87042,132408..132507,146770..146913, 162979..163098) |
|---|---|
| CDS Sequence | Download Select all |
| CCDS ID | - |
Protein Information
| Protein ID | NP_004119.1 |
|---|---|
| Protein Name | General transcription factor IIF, polypeptide 2, 30kDa |
| Molecular Wt. (Da) | 28249 |
| Protein Sequence | Download Select all |
| Length | 249 |
| Uniprot ID | Q13887 |
| Ensembl Protein ID | ENSP00000366915 |
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| S | Phosphorylation | 248 |
| S | Phosphorylation | 142;- |
| K | Acetylation | 33 |
| K | Acetylation | 137 |
| K | Acetylation | 22 |
| S | Phosphorylation | 76 |
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING) View
| Interactant Gene ID (Source: HPRD) | Gene Symbol | HPRD ID | Ref Seq ID | Technique | References |
|---|---|---|---|---|---|
| 405 | ARNT | 524 | NP_001659.1 | in vitro | 8794892 |
| 1054 | CEBPG | 738 | NP_001797.1 | in vivo | 8628277 |
| 1385 | CREB1 | 442 | NP_604391.1 | in vivo | 8628277 |
| 1386 | ATF2 | 443 | NP_001871.2 | in vitro | 8628277 |
| 2353 | FOS | 1275 | NP_005243.1 | in vitro;in vivo | 8628277 |
| 2960 | GTF2E1 | 1799 | NP_005504.2 | in vitro | 11113176 |
| 2961 | GTF2E2 | 1800 | NP_002086.1 | in vitro | 967 742 311 113 176 |
| 2962 | GTF2F1 | 1803 | NP_002087.2 | in vitro;in vivo | 86 626 608 441 635 |
| 3725 | JUN | 1302 | NP_002219.1 | in vitro;in vivo | 8628277 |
| 4488 | MSX2 | 421 | NP_002440.2 | in vitro | 9265625 |
Pathway Information
| Pathway Name | Pathway ID |
|---|---|
| Basal transcription factors | hsa03022 |
Domain Information
| ID | Location | Description |
|---|---|---|
| cd07980 | 5-118 | TFIIF_beta |
| cl02122 | 5-118 | TFIIF_beta superfamily |
| pfam02270 | 5-241 | TFIIF_beta |
| COG5090 | 6-247 | TFG2 |
Ontology Information
| HPRD ID | 4212 |
|---|---|
| Molecular Class | Transcription factor |
| Molecular Function | Transcription factor activity (GO:0003700) |
| Biological Process | Regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism (GO:0019219) |
Drug Information
No matching records could be found.