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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
HNRPAB 3182 Heterogeneous nuclear ribonucleoprotein A/B  5ABBP1; HNRPAB 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
20089989   2010Cell line : -

Source : VU University Medical Center, Amsterdam, The Netherlands.

Sample Type : CRC tumor and control tissue

No. of Sample : -

Stage : -

Biochemical isolation to nano-LC-MS/MS analysisUp-regulation2,3-


Gene Details



Chromosome: 5; NC_000005.9 (177631508..177638184)

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Gene Type protein coding
Gene Family RNA binding motif (RRM) containing
Description This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are produced by RNA polymerase II and are components of the heterogeneous nuclear RNA (hnRNA) complexes. They are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene, which binds to one of the components of the multiprotein editosome complex, has two repeats of quasi-RRM (RNA recognition motif) domains that bind to RNAs. Two alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Jul 2008]  
Chromosome 5
Location 5q35.3
Start 178204507  
End 178211183  
Strand +  
Gene Sequence

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Length 6677  
OMIM ID 602688   
HGNC ID HGNC:5034   
Unigene ID Hs.591731    
Ensembl ID ENSG00000197451   
PharmGKB ID -   

mRNA Information


mRNA ID NM_031266.2
Exon join(1..234,309..540,1336..1504,2226..2384,2588..2719, 4824..4941,5626..5766,6047..6677)  
mRNA Sequence

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Length 1837  



CDS Information


   
Location join(332..540,1336..1504,2226..2384,2588..2719,4824..4941, 5626..5766,6047..6117)
CDS Sequence

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CCDS ID CCDS34309.1



Protein Information


      
Protein IDNP_004490.2
Protein NameHeterogeneous nuclear ribonucleoprotein A/B
Molecular Wt. (Da)30457
Protein Sequence

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Length 285  
Uniprot IDQ9UQM7
Ensembl Protein ID ENSP00000261793  



Post-translational Modification Information (Source : HPRD)


Residue Type site
RMethylation322
RMethylation275
SPhosphorylation242
SPhosphorylation242
YPhosphorylation235
KAcetylation330
KAcetylation283
KAcetylation271
TPhosphorylation100
TPhosphorylation100
YPhosphorylation332
YPhosphorylation285
YPhosphorylation240
YPhosphorylation240
SPhosphorylation255
YPhosphorylation235

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

               
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
60ACTB32NP_001092.1in vitro11937625   


Pathway Information


No matching records could be found.

Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd1275770-144  RRM1_hnRNPAB
cl1716970-144  RRM_SF superfamily
cd12584149-229  RRM2_hnRNPAB
cl17169149-229  RRM_SF superfamily
cd1257571-144  RRM1_hnRNPD_like
cd1232571-142  RRM1_hnRNPA_hnRNPD_like
cd12329154-229  RRM2_hnRNPD_like
cd1275671-144  RRM1_hnRNPD
cd1275870-144  RRM1_hnRPDL
cd12583154-229  RRM2_hnRNPD
cd12585154-229  RRM2_hnRPDL
cd1257671-144  RRM1_MSI
cd1257470-142  RRM1_DAZAP1
cd1257771-145  RRM1_Hrp1p
cd1276070-144  RRM1_MSI2
cd1257870-146  RRM1_hnRNPA_like
cd1275970-144  RRM1_MSI1
cd1232170-142  RRM1_TDP43
cd1233070-144  RRM2_Hrp1p
cd1276170-146  RRM1_hnRNPA1
cd1276270-146  RRM1_hnRNPA2B1
cd1276370-146  RRM1_hnRNPA3
cd12580153-229  RRM2_hnRNPA1
cd1238470-144  RRM_RBM24_RBM38_like
cd1232670-144  RRM1_hnRNPA0
cd12328154-227  RRM2_hnRNPA_like
cd1238269-144  RRM_RBMX_like
cd1232870-142  RRM2_hnRNPA_like
cd12325155-227  RRM1_hnRNPA_hnRNPD_like
cd12327152-231  RRM2_DAZAP1
pfam0007672-139  RRM_1
cd0059072-139  RRM_SF
cd1224270-140  RRM_SLIRP
cd12582153-233  RRM2_hnRNPA3
cd12323154-228  RRM2_MSI
cd1232370-143  RRM2_MSI
cd12581153-233  RRM2_hnRNPA2B1
cd1239970-139  RRM_HP0827_like
cd1232770-144  RRM2_DAZAP1
cd12330154-229  RRM2_Hrp1p
pfam08143Jan-70  CBFNT
cl06951Jan-70  CBFNT superfamily
cd12578154-232  RRM1_hnRNPA_like
cd12321154-232  RRM1_TDP43
cd1258070-145  RRM2_hnRNPA1
cd00590155-228  RRM_SF
cd1244969-139  RRM_CIRBP_RBM3
pfam00076155-225  RRM_1
cd1241572-144  RRM3_RBM28_like
cd12576155-229  RRM1_MSI
cd1244770-139  RRM1_gar2
cd1241270-145  RRM_DAZL_BOULE
cd1232270-136  RRM2_TDP43
cd1257370-144  RRM2_MSI2
cd1238772-140  RRM3_hnRNPM_like
cd12322153-229  RRM2_TDP43
cd1231173-140  RRM_SRSF2_SRSF8
cd1257270-143  RRM2_MSI1
cd12579154-233  RRM2_hnRNPA0
cd1257970-145  RRM2_hnRNPA0
cd1258270-146  RRM2_hnRNPA3
cd1230672-139  RRM_II_PABPs
cd1236373-139  RRM_TRA2
cd12574154-232  RRM1_DAZAP1
cd12384153-229  RRM_RBM24_RBM38_like
cd1239872-139  RRM_CSTF2_RNA15_like
cd1258170-146  RRM2_hnRNPA2B1
cd1245071-139  RRM1_NUCLs
cd12573153-229  RRM2_MSI2
cd12271155-213  RRM1_PHIP1
cd12347155-206  RRM_PPIE
cd12577155-232  RRM1_Hrp1p
cd12399154-231  RRM_HP0827_like
cd1222967-143  RRM_G3BP
cd1240071-139  RRM_Nop6
cd1228471-129  RRM2_RBM23_RBM39
cd12575155-232  RRM1_hnRNPD_like
cd1228372-127  RRM1_RBM39_like
cd12760154-229  RRM1_MSI2
cd12572154-227  RRM2_MSI1
cd1234771-139  RRM_PPIE
cd12759154-229  RRM1_MSI1
cd1256667-139  RRM2_MRD1
cd12284155-214  RRM2_RBM23_RBM39
cd1267471-139  RRM1_Nop4p
cd1227272-139  RRM2_PHIP1
cd1231670-139  RRM3_RBM19_RRM2_MRD1
cd1223671-139  RRM_snRNP70
cd1241476-139  RRM2_RBM28_like
cd1229870-140  RRM3_Prp24
cd1239572-139  RRM2_RBM34
cd1240876-137  RRM_eIF3G_like
cd1246367-138  RRM_G3BP1
cd1235371-129  RRM2_TIA1_like
cd1236170-125  RRM1_2_CELF1-6_like
cd12382154-202  RRM_RBMX_like
cd12237150-219  RRM_snRNP35
cd1244871-137  RRM2_gar2
cd12298154-230  RRM3_Prp24
cd1241167-139  RRM_ist3_like
cd12395155-227  RRM2_RBM34
cd12326154-229  RRM1_hnRNPA0
cd12242154-227  RRM_SLIRP
cd1261971-139  RRM2_PUB1
cd1236271-143  RRM3_CELF1-6
cd12413155-232  RRM1_RBM28_like
cd12226155-232  RRM_NOL8
cd12316154-206  RRM3_RBM19_RRM2_MRD1
cd1241870-140  RRM_Aly_REF_like
cd1231872-140  RRM5_RBM19_like
cd1223771-139  RRM_snRNP35
cd12762153-229  RRM1_hnRNPA2B1
cd12236153-209  RRM_snRNP70
cd1267671-129  RRM3_Nop4p
cd12761152-229  RRM1_hnRNPA1
cd1237170-124  RRM2_PUF60
cd12408162-214  RRM_eIF3G_like
cd1241771-139  RRM_SAFB_like
cd1231271-151  RRM_SRSF10_SRSF12
cd1239172-137  RRM1_SART3
cd12251152-231  RRM3_hnRNPR_like
cd1246467-138  RRM_G3BP2
cd12763152-232  RRM1_hnRNPA3
cd12566153-206  RRM2_MRD1
cd1227971-144  RRM_TUT1
cd1238072-149  RRM3_I_PABPs
cd12670155-226  RRM2_Nop12p_like
cd12365166-213  RRM_RNPS1
cd1255971-151  RRM_SRSF10
cd1256767-117  RRM3_RBM19
cd1245170-137  RRM2_NUCLs
cd12449154-209  RRM_CIRBP_RBM3
cd1245472-132  RRM2_RIM4_like
cd1263265-125  RRM1_CELF3_4_5_6
cd12400155-219  RRM_Nop6
cd12370154-214  RRM1_PUF60
cd1264173-139  RRM_TRA2B
cd1239372-139  RRM_ZCRB1
cd1237272-144  RRM_CFIm68_CFIm59
cd12458166-227  RRM_AtC3H46_like
cd1233571-121  RRM2_SF3B4
cd1223571-125  RRM_PPIL4
cd12448155-213  RRM2_gar2
cd1236573-139  RRM_RNPS1
cd12391155-221  RRM1_SART3
cd12228153-212  RRM_ENOX
cd12302151-229  RRM_scSet1p_like
cd1227172-140  RRM1_PHIP1
cd12451154-213  RRM2_NUCLs
cd12291155-215  RRM1_La
cd1237967-158  RRM2_I_PABPs
cd1277371-127  RRM2_HuR
cd1229072-145  RRM1_LARP7
cd1233671-139  RRM_RBM7_like
cd12361154-206  RRM1_2_CELF1-6_like
cd1264273-143  RRM_TRA2A
cd1235071-127  RRM3_SHARP
cd12454155-219  RRM2_RIM4_like
cd1261371-127  RRM2_NGR1_NAM8_like
cd12290155-213  RRM1_LARP7
cd1241372-149  RRM1_RBM28_like
cd1234571-119  RRM2_SECp43_like
cd1240467-139  RRM2_NCL
cd12414162-204  RRM2_RBM28_like
cd12306155-212  RRM_II_PABPs
cd12450155-232  RRM1_NUCLs
cd1263670-122  RRM2_Bruno_like
cd12229154-215  RRM_G3BP
cd1224372-128  RRM1_MSSP
cd12336155-208  RRM_RBM7_like
cd12363157-214  RRM_TRA2
cd1261771-127  RRM2_TIAR
cd1256582-127  RRM1_MRD1
cd1230273-170  RRM_scSet1p_like
cd1237872-129  RRM1_I_PABPs
cd12567154-202  RRM3_RBM19
cd1222672-115  RRM_NOL8
cd1265271-117  RRM2_Hu
cd1261871-129  RRM2_TIA1
cd1259971-124  RRM1_SF2_plant_like
cd1267370-137  RRM_BOULE
cd1263570-121  RRM2_CELF3_4_5_6
cd1231971-143  RRM4_MRD1
cd1238370-119  RRM_RBM42
cd1235771-132  RRM_PPARGC1A_like
cd12415153-213  RRM3_RBM28_like
cd1226770-147  RRM_YRA1_MLO3
cd1265081-128  RRM1_Hu
cd12565154-229  RRM1_MRD1
cd1237370-139  RRM_SRSF3_like
cd1237671-117  RRM2_Hu_like
cd1267271-130  RRM_DAZL
cd12412154-215  RRM_DAZL_BOULE
cd1256071-151  RRM_SRSF12
cd12279155-230  RRM_TUT1
cd12353155-202  RRM2_TIA1_like
cd1233870-139  RRM1_SRSF1_like
cd1267171-122  RRM_CSTF2_CSTF2T
cd1277671-127  RRM2_HuC
cd12552155-228  RRM_Nop15p
cd1239771-130  RRM2_Nop13p_fungi
cd1277571-127  RRM2_HuB
cd1277471-127  RRM2_HuD
cd1240784-144  RRM_FOX1_like
cd12324155-204  RRM_RBM8
cd1234672-139  RRM3_NGR1_NAM8_like
cd1222771-139  RRM_SCAF4_SCAF8
cd1272470-128  RRM1_CPEB2_like
cd1240272-139  RRM_eIF4B
cd1230372-143  RRM_spSet1p_like
cd1237579-143  RRM1_Hu_like
cd1238971-150  RRM2_RAVER
cd12523153-202  RRM2_MRN1
cd12274155-213  RRM2_NEFsp
cd12231154-204  RRM2_U2AF65
cd12592153-208  RRM_RBM7
cd12398155-206  RRM_CSTF2_RNA15_like
cd1277165-128  RRM1_HuB
cd12564162-217  RRM1_RBM19
cd12411155-205  RRM_ist3_like
cd1244470-128  RRM1_CPEBs
cd1230783-121  RRM_NIFK_like
cd1236779-142  RRM2_RBM45
cd1239071-139  RRM3_RAVER
cd1239270-139  RRM2_SART3
cd1255171-143  RRM_II_PABPN1L
cd1257170-137  RRM6_RBM19
cd12297162-231  RRM2_Prp24
cd12724153-213  RRM1_CPEB2_like
cd12311166-229  RRM_SRSF2_SRSF8
cd12346155-198  RRM3_NGR1_NAM8_like
cd1232070-121  RRM6_RBM19_RRM5_MRD1
cd1230971-139  RRM2_Spen
cd1244670-143  RRM_RBM25
cd1267971-139  RRM_SAFB1_SAFB2
cd1267071-148  RRM2_Nop12p_like
cd1225475-139  RRM_hnRNPH_ESRPs_RBM12_like
cd1263470-127  RRM2_CELF1_2
cd1266170-140  RRM3_hnRNPM
cd1253768-148  RRM1_RBM23
cd1255071-139  RRM_II_PABPN1
cd1233270-115  RRM1_p54nrb_like
cd1231570-128  RRM1_RBM19_MRD1
cd1222471-134  RRM_RBM22
cd1248270-133  RRM1_hnRNPR
cd12224155-217  RRM_RBM22
cd1234370-139  RRM1_2_CoAA_like
cd1255271-139  RRM_Nop15p
cd1261271-127  RRM2_SECp43
cd12303155-204  RRM_spSet1p_like
cd1240671-136  RRM4_NCL
cd12394155-221  RRM1_RBM34
cd12357155-213  RRM_PPARGC1A_like
cd1231375-139  RRM1_RRM2_RBM5_like
cd12571154-213  RRM6_RBM19
cd1253683-148  RRM1_RBM39
cd12723154-221  RRM1_CPEB1
cd12380162-214  RRM3_I_PABPs
cd1237069-129  RRM1_PUF60
cd1256470-143  RRM1_RBM19
pfam1389385-139  RRM_5
cd12674155-214  RRM1_Nop4p
cd1260870-143  RRM1_CoAA
cd1262371-118  RRM_PPARGC1A
cd12633154-212  RRM1_FCA
cd1223170-143  RRM2_U2AF65
cd12267154-214  RRM_YRA1_MLO3
cd1266270-140  RRM3_MYEF2
cd12397155-215  RRM2_Nop13p_fungi
cd12371154-206  RRM2_PUF60
cd1234172-139  RRM_hnRNPC_like
cd1277071-128  RRM1_HuD
cd1265171-117  RRM2_SXL
cd12770162-227  RRM1_HuD
cd12771162-227  RRM1_HuB
cd1248370-121  RRM1_hnRNPQ
cd1247271-127  RRM1_RBMS3
cd1238570-137  RRM1_hnRNPM_like
cd12444153-221  RRM1_CPEBs
cd12559155-230  RRM_SRSF10
cd1238185-117  RRM4_I_PABPs
cd12671155-206  RRM_CSTF2_CSTF2T
cd12265153-214  RRM_SLT11
cd1239472-139  RRM1_RBM34
cd12227155-229  RRM_SCAF4_SCAF8
cd12354155-202  RRM3_TIA1_like
cd12447154-215  RRM1_gar2
cd12332154-200  RRM1_p54nrb_like
cd12676155-212  RRM3_Nop4p
cd1233770-137  RRM1_SRSF4_like
cd1223371-139  RRM_Srp1p_AtRSp31_like
cd1247071-151  RRM1_MSSP1
cd1252471-140  RRM1_MEI2_like
cd1259870-124  RRM1_SRSF9
cd1268069-137  RRM_THOC4
cd12225155-232  RRM1_2_CID8_like
cd1245882-129  RRM_AtC3H46_like
cd1260670-132  RRM1_RBM4
cd1235570-143  RRM_RBM18
cd1262471-120  RRM_PRC
cd1246771-137  RRM_Srp1p_like
cd12233155-213  RRM_Srp1p_AtRSp31_like
cd12360153-203  RRM_cwf2
cd12341154-206  RRM_hnRNPC_like
cd12235155-206  RRM_PPIL4
cd12606154-220  RRM1_RBM4
cd1258670-115  RRM1_PSP1
cd1224071-139  RRM_NCBP2
cd12375162-227  RRM1_Hu_like
cd1277271-128  RRM1_HuC
cd12320166-218  RRM6_RBM19_RRM5_MRD1
cd1267570-139  RRM2_Nop4p
cd1263770-117  RRM2_FCA
cd1222572-136  RRM1_2_CID8_like
cd12272155-213  RRM2_PHIP1
cd1250575-140  RRM2_GRSF1
cd12673154-214  RRM_BOULE
cd12524155-233  RRM1_MEI2_like
cd1263168-120  RRM1_CELF1_2_Bruno
cd1265870-143  RRM1_MYEF2
cd12277162-229  RRM3_MEI2_EAR1_like
cd12650162-229  RRM1_Hu
cd12335155-202  RRM2_SF3B4
cd12366151-202  RRM1_RBM45
cd1237771-139  RRM3_Hu
cd1234473-127  RRM1_SECp43_like
cd12642166-214  RRM_TRA2A
cd12619155-212  RRM2_PUB1
cd1259371-123  RRM_RBM11
cd12294156-215  RRM_Rrp7A
cd12307155-213  RRM_NIFK_like
cd12636153-224  RRM2_Bruno_like
cd12637154-206  RRM2_FCA
cd1236898-123  RRM3_RBM45
cd12407167-229  RRM_FOX1_like
cd12617155-202  RRM2_TIAR
cd12641166-214  RRM_TRA2B
cd1240571-139  RRM3_NCL
cd12260155-212  RRM2_SREK1
cd12545153-228  RRM_IN35
cd1224476-127  RRM2_MSSP
cd1263967-124  RRM3_CELF3_4_5_6
cd12381162-230  RRM4_I_PABPs
cd1247171-127  RRM1_MSSP2
cd12257153-212  RRM1_RBM26_like
cd12367154-232  RRM2_RBM45
cd1259770-124  RRM1_SRSF1
cd1257069-132  RRM5_MRD1
cd12377155-201  RRM3_Hu
cd1224672-129  RRM1_U1A_like
cd12560168-230  RRM_SRSF12
cd12494152-231  RRM3_hnRNPR
cd1239671-139  RRM1_Nop13p_fungi
cd1236683-143  RRM1_RBM45
cd1224972-143  RRM1_hnRNPR_like
cd1272370-136  RRM1_CPEB1
cd12464154-215  RRM_G3BP2
cd1267871-127  RRM_SLTM
cd1224171-119  RRM_SF3B14
cd1264471-144  RRM_CFIm59
cd1222371-139  RRM_SR140
pfam13893170-214  RRM_5
smart0036070-140  RRM
smart00360154-226  RRM
TIGR0162265-214  SF-CC1
TIGR0162869-232  PABP-1234
PLN0313470-139  PLN03134
TIGR0162871-229  PABP-1234
TIGR0162858-233  PABP-1234
COG072460-217  RRM
pfam1425972-139  RRM_6
pfam14259155-223  RRM_6
COG0724142-238  RRM
TIGR0164570-202  half-pint
TIGR0164565-122  half-pint
TIGR0166181-228  ELAV_HUD_SF
TIGR0164253-168  U2AF_lg
TIGR01645154-239  half-pint
TIGR0164870-204  hnRNP-R-Q
TIGR0166171-117  ELAV_HUD_SF
TIGR0166171-115  ELAV_HUD_SF
TIGR01661162-231  ELAV_HUD_SF
TIGR01661155-201  ELAV_HUD_SF
PLN03134154-205  PLN03134


Ontology Information


   
HPRD ID6532
Molecular ClassUnknown
Molecular FunctionProtein serine/threonine kinase activity (GO:0004674)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO