Search results:
General Information
| Gene_Symbol | Gene_ID | Gene_Name | Chromosome | Alias |
|---|---|---|---|---|
| APC | 324 | Adenomatosis polyposis coli  | 5 | GS; DP2; DP3; BTPS2; DP2.5; PPP1R46  |
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 23255887    | 2012 | Cell line : - Source : Department of Surgery, Ryhov County Hospital, Sweden and the Department of Pathology, National Cancer Hospital (Tamhiep, Hanoi, Vietnam). Sample Type : CRC tumor and Normal tissue No. of Sample : 101 Stage : TNM Stage I-IV | Methylation specific PCR and CpG island analysis | Methylation | - | Hypermethylation of the APC and IGFBP7 gene promoter region in cancerous and normal tissue may be a prognostic factor in CRC patients. |
| 23085758    | 2012 | Cell line : - Source : Royal Melbourne Hospital, Western Hospital Footscray, Prince of Wales Hospital Sydney, and Royal Adelaide Hospital, Australia. Sample Type : CRC tumor and Normal tissue No. of Sample : 630 Stage : TNM Stage I-IV | Sanger sequencing, SNP microarray,Microsatellite instability analysis and Immunohistochemistry | Mutation | - | Truncating APC mutations and/orLoss of Heterozygocity (LOH) were detected in 75% of CRCs. Most truncating mutations occurred within a mutation cluster region (MCR; codons 1282 -1581) leaving 1-3 intact 20 amino-acid repeats (20AARs) and abolishing all Ser-Ala-Met-Pro (SAMP) repeats. |
| 23159591    | 2013 | Cell line : - Source : - Sample Type : - No. of Sample : 1421 CRC Case Stage : - | Mutation analysis, multiplex ligation-dependent probe amplification, | Mutation | - | Of the 431 pathogenic or likely pathogenic mutations, frameshift, nonsense, splice site, and large deletion or duplication mutations represented 43%, 42%, 9%, and 6% of cases, respectively. Gene deletion or duplication analysis was performed in 1421 cases by multiplex ligation-dependent probe amplification. |
| 23168910    | 2012 | Cell line : - Source : - Sample Type : - No. of Sample : - Stage : - | Comparative analysis of early and late-onset CRC | Mutation | - | APC mutation induced deregulated Wnt signaling. This study revealed the possible existence of non-canonical tumorigenesis pathways in early-onset CRC in India. |
| 23244118    | 2012 | Cell line : - Source : Chulalongkorn King Memorial Hospital Sample Type : - No. of Sample : - Stage : - | Direct DNA sequencing, APC gene mutation analysis | Mutation | - | A family with attenuated familial adenomatous polyposis of APC related to exon 4 mutation, c.481C>T p.Q161X, was reported. Familial adenomatous polyposis(FAP) is an autosomal dominant hereditary disease characterized by multiple colorectal adenomatous polyps affecting a number of cases in the family. |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | Serine/threonine phosphatases / Protein phosphatase 1, regulatory subunits, Armadillo repeat containing |
| Description | This gene encodes a tumor suppressor protein that acts as an antagonist of the Wnt signaling pathway. It is also involved in other processes including cell migration and adhesion, transcriptional activation, and apoptosis. Defects in this gene cause familial adenomatous polyposis (FAP), an autosomal dominant pre-malignant disease that usually progresses to malignancy. Disease-associated mutations tend to be clustered in a small region designated the mutation cluster region (MCR) and result in a truncated protein product. [provided by RefSeq, Jul 2008].   |
| Chromosome | 5 |
| Location | 5q21-q22 |
| Start | 112707505   |
| End | 112846239   |
| Strand | +   |
| Gene Sequence |    Download   Select all |
| Length | 138735   |
| OMIM ID | 611731    |
| HGNC ID | HGNC:583    |
| Unigene ID | Hs.158932     |
| Ensembl ID | ENSG00000134982    |
| PharmGKB ID | -    |
mRNA Information
| mRNA ID | NM_001127511.2 |
|---|---|
| Exon | join(1..378,58822..58906,59685..59886,68125..68233, 73286..73399,93775..93879,107991..108089,111462..111840, 114392..114487,119604..119743,120425..120502, 121352..121468,127447..127661,130049..138735)   | mRNA Sequence |    Download   Select all |
| Length | 10814   |
CDS Information
| Location | join(214..378,58822..58906,59685..59886,68125..68233, 73286..73399,93775..93879,107991..108089,111462..111840, 114392..114487,119604..119743,120425..120502, 121352..121468,127447..127661,130049..136622) |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | - |    
Protein Information
| Protein ID | NP_000029.2 |
|---|---|
| Protein Name | Adenomatosis polyposis coli |
| Molecular Wt. (Da) | 311516 |
| Protein Sequence |    Download   Select all |
| Length | 2843   |
| Uniprot ID | O60503 |    
| Ensembl Protein ID | ENSP00000294016   |    
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| S | Phosphorylation | 1279 |
| S | Phosphorylation | 1392 |
| S | Phosphorylation | 2054 |
| S | Phosphorylation | 1501 |
| S | Phosphorylation | 1504 |
| S | Phosphorylation | 1505 |
| S | Phosphorylation | 1507 |
| S | Phosphorylation | 1510 |
| S | Phosphorylation | 1503 |
| S | Phosphorylation | 722;- |
| S | Phosphorylation | 2093;- |
| S | Phosphorylation | 1864;- |
| S | Phosphorylation | 1861;- |
| S | Phosphorylation | 1863;- |
| S | Phosphorylation | 2398;- |
| S | Phosphorylation | 780 |
| S | Phosphorylation | 1042 |
| S | Phosphorylation | 1360 |
| T | Phosphorylation | 1438 |
| S | Phosphorylation | 2088 |
| S | Phosphorylation | 2096 |
| S | Phosphorylation | 2129 |
| S | Phosphorylation | 2130 |
| S | Phosphorylation | 2143 |
| T | Phosphorylation | 2151 |
| S | Phosphorylation | 2260 |
| S | Phosphorylation | 2270 |
| S | Phosphorylation | 2283 |
| S | Phosphorylation | 2464 |
| S | Phosphorylation | 2469 |
| S | Phosphorylation | 2473 |
| S | Phosphorylation | 2533 |
| S | Phosphorylation | 2535 |
| S | Phosphorylation | 2671 |
| S | Phosphorylation | 2674 |
| T | Phosphorylation | 2679 |
| T | Phosphorylation | 2676 |
| S | Phosphorylation | 2789 |
| S | Phosphorylation | 987 |
| T | Phosphorylation | 2266 |
| S | Phosphorylation | 1044 |
| S | Phosphorylation | 1371 |
| S | Phosphorylation | 2531 |
| S | Phosphorylation | 2537 |
| S | Phosphorylation | 2835 |
| S | Phosphorylation | 2837 |
| S | Phosphorylation | 2461 |
| S | Phosphorylation | 895 |
| T | Phosphorylation | 899 |
| S | Phosphorylation | 744 |
| Y | Phosphorylation | 863 |
| T | Phosphorylation | 867 |
| T | Phosphorylation | 883 |
| S | Phosphorylation | 2239 |
| S | Phosphorylation | 2241 |
| S | Phosphorylation | 2799 |
| Y | Phosphorylation | 2838 |
| S | Phosphorylation | 2621 |
| Y | Phosphorylation | 316 |
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING)      View   
| Interactant Gene ID (Source: HPRD) | Gene Symbol | HPRD ID | Ref Seq ID | Technique | References |
|---|---|---|---|---|---|
| 1487 |    CTBP1 |    4015 |    NP_001319.1 |    in vitro;in vivo |    15525529    |
| 1499 |    CTNNB1 |    286 |    NP_001895.1 |    in vitro;in vivo |    120   007   909   482   734   000   000   000   000   000   000   000   000   000   000   000   000   000    |
| 2932 |    GSK3B |    5418 |    NP_002084.2 |    in vitro |    863   812   611   166   179    |
| 3728 |    JUP |    1414 |    NP_002221.1 |    in vitro |    11   707   392   113   485   900   000   000   000   000   000   000   000    |
| 5515 |    PPP2CA |    8912 |    NP_002706.1 |    in vitro |    10698523    |
| 7277 |    TUBA4A |    1851 |    NP_005991.1 |    in vitro |    11166179    |
| 8826 |    IQGAP1 |    4541 |    NP_003861.1 |    in vitro;in vivo |    15572129    |
Pathway Information
| Pathway Name | Pathway ID |
|---|---|
| Basal cell carcinoma |    hsa05217 |    
| Colorectal cancer |    hsa05210 |    
| Endometrial cancer |    hsa05213 |    
| Hippo signaling pathway |    hsa04390 |    
| HTLV-I infection |    hsa05166 |    
| MicroRNAs in cancer |    hsa05206 |    
| Pathways in cancer |    hsa05200 |    
| Regulation of actin cytoskeleton |    hsa04810 |    
| Signaling pathways regulating pluripotency of stem cells |    hsa04550 |    
| Wnt signaling pathway |    hsa04310 |    
Structure Information
| PDB ID | 1DEB |
|---|---|
| Resolution | 2.4 |
| Method | X-RAY DIFFRACTION� |
| Chains | A,B   |
| Molecule | ADENOMATOUS POLYPOSIS COLI PROTEIN   |
| Model | View |
Domain Information
| ID | Location | Description |
|---|---|---|
| cd00020 | 611-731  | ARM |
| cl22454 | 611-731  | ARM superfamily |
| cd00020 | 464-597  | ARM |
| cl22454 | 464-597  | ARM superfamily |
| cd00020 | 311-413  | ARM |
| cl22454 | 311-413  | ARM superfamily |
| pfam05937 | 2670-2843  | EB1_binding |
| cl05480 | 2670-2843  | EB1_binding superfamily |
| pfam11414 | 126-208  | Suppressor_APC |
| cl12943 | 126-208  | Suppressor_APC superfamily |
| cd00020 | 449-553  | ARM |
| cd00020 | 654-743  | ARM |
| smart00185 | 649-689  | ARM |
| pfam00514 | 649-689  | Arm |
| pfam05923 | 1636-1661  | APC_crr |
| cl05471 | 1636-1661  | APC_crr superfamily |
| pfam05924 | 2034-2053  | SAMP |
| cl15568 | 2034-2053  | SAMP superfamily |
| pfam05923 | 1369-1394  | APC_crr |
| cl05471 | 1369-1394  | APC_crr superfamily |
| pfam05924 | 1719-1738  | SAMP |
| cl15568 | 1719-1738  | SAMP superfamily |
| pfam00514 | 691-729  | Arm |
| smart00185 | 512-553  | ARM |
| pfam00514 | 512-552  | Arm |
| pfam05956 | 2223-2568  | APC_basic |
| PHA03247 | 2251-2564  | PHA03247 |
| PHA03307 | 2256-2401  | PHA03307 |
| PHA03307 | 2249-2544  | PHA03307 |
| pfam15402 | 2233-2386  | Spc7_N |
| COG1196 | 14-251  | Smc |
| pfam09786 | 2266-2396  | CytochromB561_N |
| COG1196 | 4-272  | Smc |
| pfam15402 | 2254-2361  | Spc7_N |
| TIGR02169 | 134-259  | SMC_prok_A |
| TIGR02168 | 120-260  | SMC_prok_B |
| TIGR02168 | 134-272  | SMC_prok_B |
| PTZ00449 | 1291-1701  | PTZ00449 |
| PHA03307 | 2252-2568  | PHA03307 |
| TIGR02168 | 2-272  | SMC_prok_B |
| PHA03247 | 2250-2540  | PHA03247 |
| COG1196 | 134-251  | Smc |
| pfam05539 | 2249-2398  | Pneumo_att_G |
| COG4477 | Apr-85  | EzrA |
Ontology Information
| HPRD ID | 4489 |    
|---|---|
| Molecular Class | Adhesion molecule |
| Molecular Function | Adenylate cyclase activity (GO:0004016) |
| Biological Process | Cell communication (GO:0007154); Signal transduction (GO:0007165)   |
Drug Information
No matching records could be found.
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    
