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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
IGFBP3 3486 insulin-like growth factor binding protein 3  7IBP3, BP-53 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
25127039   2014Cell line : -

Source : Hospital 12 de Octubre, Madrid; Hospital Clinic, Barcelona; Hospital Cl?nico Universitario, Zaragoza; Hospital Cristal-Pinor, Complexo Hospitalario de Ourense; Parc de Salut Mar, Barcelona; Hospital Donostia, CIBERehd, University of Country Basque, San Sebastian; Hospital General Universitario de Alicante; Hospital General de Granollers; Hospital General de Vic; Hospital General Universitario de Guadalajara and Fundaci?n para la Formaci?n e Investigaci?n Sanitarias Murcia; Hospital General Universitario de Valencia.

Sample Type : CRC tumor and normal tissue

No. of Sample : :425 CRC patients

Stage : TNM Stage II,III

Bisulfite pyrosequencingHypermethylation-IGFBP3 hypermethylation may serve as an independent prognostic and predictive biomarker in stage II and III CRC patients.


Gene Details



Chromosome 7 - NC_000007.14 (45912245..45921272, complement)

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Gene Type protein coding
Gene Family
Description This gene is a member of the insulin-like growth factor binding protein (IGFBP) family and encodes a protein with an IGFBP domain and a thyroglobulin type-I domain. The protein forms a ternary complex with insulin-like growth factor acid-labile subunit (IGFALS) and either insulin-like growth factor (IGF) I or II. In this form, it circulates in the plasma, prolonging the half-life of IGFs and altering their interaction with cell surface receptors. Alternate transcriptional splice variants, encoding different isoforms, have been characterized.  
Chromosome 7
Location 7p12.3
Start 45912245  
End 45921272  
Strand -  
Gene Sequence

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Length 9028  
OMIM ID 146732   
HGNC ID HGNC:5472   
Unigene ID Hs.450230   
Ensembl ID ENSG00000146674   
PharmGKB ID -   

mRNA Information


mRNA ID NM_000598.4
Exon join(1..535,3834..4060,4606..4725,6328..6468,7439..9028)  
mRNA Sequence

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Length 2620  



CDS Information


   
Locationjoin(133..535,3834..4060,4606..4725,6328..6453)
CDS Sequence

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CCDS ID CCDS5505.1



Protein Information


      
Protein IDNP_000589.2
Protein Nameinsulin-like growth factor binding protein 3
Molecular Wt. (Da)28750
Protein Sequence

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Length 291  
Uniprot IDQ30201
Ensembl Protein ID ENSP00000313776  



Post-translational Modification Information (Source : HPRD)


Residue Type site
NGlycosylation116
NGlycosylation142
KProteolytic Cleavage182
KProteolytic Cleavage183
KProteolytic Cleavage187
NGlycosylation205
NGlycosylation116
NGlycosylation136
KProteolytic Cleavage176
KProteolytic Cleavage177
KProteolytic Cleavage181
NGlycosylation199
SPhosphorylation144
SPhosphorylation146
SPhosphorylation138
SPhosphorylation140
HProteolytic Cleavage175
LProteolytic Cleavage236
HProteolytic Cleavage169
LProteolytic Cleavage230
YProteolytic Cleavage126
KProteolytic Cleavage193
EProteolytic Cleavage197
NProteolytic Cleavage234
YProteolytic Cleavage126
KProteolytic Cleavage187
EProteolytic Cleavage191
NProteolytic Cleavage228
KProteolytic Cleavage177
KProteolytic Cleavage171
LProteolytic Cleavage123
YProteolytic Cleavage126
LProteolytic Cleavage174
LProteolytic Cleavage123
YProteolytic Cleavage126
LProteolytic Cleavage168
YProteolytic Cleavage126
LProteolytic Cleavage123
LProteolytic Cleavage174
LProteolytic Cleavage123
YProteolytic Cleavage126
LProteolytic Cleavage168
RProteolytic Cleavage122
RProteolytic Cleavage124
AProteolytic Cleavage27
KProteolytic Cleavage193
RProteolytic Cleavage122
RProteolytic Cleavage124
KProteolytic Cleavage187
RProteolytic Cleavage124
RProteolytic Cleavage165
YProteolytic Cleavage192
FProteolytic Cleavage206
RProteolytic Cleavage212
RProteolytic Cleavage124
RProteolytic Cleavage159
YProteolytic Cleavage186
FProteolytic Cleavage200
RProteolytic Cleavage206
RProteolytic Cleavage239
RProteolytic Cleavage124
RProteolytic Cleavage233
RProteolytic Cleavage124
NProteolytic Cleavage142
YProteolytic Cleavage126
NProteolytic Cleavage136
YProteolytic Cleavage126
AProteolytic Cleavage27
AProteolytic Cleavage27
AProteolytic Cleavage27
KProteolytic Cleavage253
KProteolytic Cleavage231
RProteolytic Cleavage191
HProteolytic Cleavage175
KProteolytic Cleavage247
KProteolytic Cleavage225
RProteolytic Cleavage185
HProteolytic Cleavage169
EProteolytic Cleavage209
EProteolytic Cleavage203
SPhosphorylation207
SPhosphorylation201

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                         
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
857CAV13028NP_001744.2in vitro14576164   
960CD44115NP_000601.3in vitro12127836   
1277COL1A1362NP_000079.2in vitro;in vivo;yeast 2-hybrid12735930   
2147F21488NP_000497.1in vitro;in vivo88   437   397   538   844   
2335FN1626NP_997647.1in vitro;in vivo;yeast 2-hybrid11344214   
5340PLG1417NP_000292.1in vitro;in vivo7   538   844   884   373   990   000   000   000   000   
23649POLA210160NP_002680.2yeast 2-hybrid16169070   


Pathway Information


            
Pathway Name Pathway ID
p53 signaling pathway hsa04115
Transcriptional misregulation in cancer hsa05202


Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd00191212-285  TY
cl00150212-285  TY superfamily
smart0012138-115  IB
cl0247238-115  IGFBP superfamily
pfam00086213-285  Thyroglobulin_1
pfam0021940-94  IGFBP
smart00211237-287  TY


Ontology Information


   
HPRD ID809
Molecular ClassGrowth inhibitory factor
Molecular FunctionCatalytic activity (GO:0003824)
Biological ProcessMetabolism (GO:0008152); Energy pathways (GO:0006091)  



SNP Information


View SNP Geneview Report   

Drug Information


Uniprot ID DrugBank ID Name Type
P17936DB01277MecaserminBiotechDrug

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO