Search results:


General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
LAMB2 3913 Laminin, beta 2 (laminin S)  3LAMS; NPHS5 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
20089989   2010Cell line : -

Source : VU University Medical Center, Amsterdam, The Netherlands.

Sample Type : CRC tumor and normal tissue

No. of Sample : -

Stage : -

Biochemical isolation to nano-LC-MS/MS analysis Up-regulation-This genes are differenitially expressed between colorectal adenoma and Colorectal cancer tissue.


Gene Details



Chromosome: 3; NC_000003.11 (49158547..49170599, complement)

View Larger Image
   
Gene Type protein coding
Gene Family Laminins
Description Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins, composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively), form a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. Several isoforms of each chain have been described. Different alpha, beta and gamma chain isomers combine to give rise to different heterotrimeric laminin isoforms which are designated by Arabic numerals in the order of their discovery, i.e. alpha1beta1gamma1 heterotrimer is laminin 1. The biological functions of the different chains and trimer molecules are largely unknown, but some of the chains have been shown to differ with respect to their tissue distribution, presumably reflecting diverse functions in vivo. This gene encodes the beta chain isoform laminin, beta 2. The beta 2 chain contains the 7 structural domains typical of beta chains of laminin, including the short alpha region. However, unlike beta 1 chain, beta 2 has a more restricted tissue distribution. It is enriched in the basement membrane of muscles at the neuromuscular junctions, kidney glomerulus and vascular smooth muscle. Transgenic mice in which the beta 2 chain gene was inactivated by homologous recombination, showed defects in the maturation of neuromuscular junctions and impairment of glomerular filtration. Alternative splicing involving a non consensus 5' splice site (gc) in the 5' UTR of this gene has been reported. It was suggested that inefficient splicing of this first intron, which does not change the protein sequence, results in a greater abundance of the unspliced form of the transcript than the spliced form. The full-length nature of the spliced transcript is not known. [provided by RefSeq, Aug 2011]  
Chromosome 3
Location 3p21
Start 49121114  
End 49133166  
Strand -  
Gene Sequence

   Download   Select all

Length 12053  
OMIM ID 150325   
HGNC ID HGNC:6487   
Unigene ID Hs.439726    
Ensembl ID ENSG00000172037   
PharmGKB ID -   

mRNA Information


mRNA ID NM_002292.3
Exon join(1..375,504..676,762..897,978..1051,1444..1632, 1725..1788,2015..2217,2307..2427,2748..2936,3149..3328, 3451..3563,3843..3922,4015..4147,4348..4506,4582..4709, 6670..6802,7008..7200,7277..7420,7683..7914,7998..8161, 8242..8466,8555..8772,8881..8977,9067..9439,9536..9720, 9794..10035,10115..10463,10797..11004,11082..11223, 11307..11483,11575..11734,11805..12053)  
mRNA Sequence

   Download   Select all

Length 5817  



CDS Information


   
Location join(300..375,504..676,762..897,978..1051,1444..1632, 1725..1788,2015..2217,2307..2427,2748..2936,3149..3328, 3451..3563,3843..3922,4015..4147,4348..4506,4582..4709, 6670..6802,7008..7200,7277..7420,7683..7914,7998..8161, 8242..8466,8555..8772,8881..8977,9067..9439,9536..9720, 9794..10035,10115..10463,10797..11004,11082..11223, 11307..11483,11575..11734,11805..11941)
CDS Sequence

   Download   Select all

CCDS ID CCDS2789.1



Protein Information


      
Protein IDNP_002283.3
Protein NameLaminin, beta 2 (laminin S)
Molecular Wt. (Da)192452
Protein Sequence

   Download   Select all

Length 1798  
Uniprot IDP04233
Ensembl Protein ID ENSP00000009530  



Post-translational Modification Information (Source : HPRD)


No matching records could be found.

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

No matching records from HPRD source could be found.

Pathway Information


                                          
Pathway Name Pathway ID
Amoebiasis hsa05146
ECM-receptor interaction hsa04512
Focal adhesion hsa04510
Pathways in cancer hsa05200
PI3K-Akt signaling pathway hsa04151
Small cell lung cancer hsa05222
Toxoplasmosis hsa05145


Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd00055782-829  EGF_Lam
cl22875782-829  EGF_Lam superfamily
cd00055521-562  EGF_Lam
cl22875521-562  EGF_Lam superfamily
cd00055469-520  EGF_Lam
cl22875469-520  EGF_Lam superfamily
cd000551037-1093  EGF_Lam
cl228751037-1093  EGF_Lam superfamily
cd000551142-1191  EGF_Lam
cl228751142-1191  EGF_Lam superfamily
cd000551094-1136  EGF_Lam
cl228751094-1136  EGF_Lam superfamily
cd00055830-873  EGF_Lam
cl22875830-873  EGF_Lam superfamily
cd00055409-468  EGF_Lam
cl22875409-468  EGF_Lam superfamily
cd00055876-921  EGF_Lam
cl22875876-921  EGF_Lam superfamily
cd00055986-1032  EGF_Lam
cl22875986-1032  EGF_Lam superfamily
cd00055926-984  EGF_Lam
cl22875926-984  EGF_Lam superfamily
cd00055347-399  EGF_Lam
cl22875347-399  EGF_Lam superfamily
cd00055283-335  EGF_Lam
cl22875283-335  EGF_Lam superfamily
pfam0005547-281  Laminin_N
cl0280647-281  Laminin_N superfamily
smart0013641-281  LamNT
smart00180783-828  EGF_Lam
pfam00053783-831  Laminin_EGF
pfam000531095-1143  Laminin_EGF
pfam000531143-1182  Laminin_EGF
smart00180522-561  EGF_Lam
pfam00053831-879  Laminin_EGF
pfam000531038-1092  Laminin_EGF
smart001801143-1187  EGF_Lam
smart001801095-1140  EGF_Lam
smart001801038-1092  EGF_Lam
pfam00053410-467  Laminin_EGF
pfam00053470-524  Laminin_EGF
pfam00053522-561  Laminin_EGF
smart00180831-874  EGF_Lam
smart00180470-513  EGF_Lam
pfam00053986-1028  Laminin_EGF
pfam00053877-924  Laminin_EGF
smart00180410-460  EGF_Lam
smart00180986-1028  EGF_Lam
pfam00053953-983  Laminin_EGF
PRK073531687-1773  PRK07353
cl214781687-1773  Mt_ATP-synt_B superfamily
pfam143461443-1517  DUF4398
cl205181443-1517  DUF4398 superfamily
pfam00053347-398  Laminin_EGF
smart00180927-976  EGF_Lam
smart00180877-916  EGF_Lam
TIGR025681483-1670  LcrE
cl154541483-1670  HrpJ superfamily
pfam053351615-1781  DUF745
cl225361615-1781  DUF745 superfamily
PRK144751680-1792  PRK14475
pfam059601479-1752  DUF885
cl198721479-1752  DUF885 superfamily
pfam00053306-338  Laminin_EGF
cd13406905-984  TNFRSF4
cl22855905-984  TNFRSF superfamily
pfam098311699-1772  DUF2058
cl012011699-1772  DUF2058 superfamily
smart00180347-400  EGF_Lam
cd001761504-1754  SPEC
cl024881504-1754  SPEC superfamily
PRK144751603-1702  PRK14475
cl214781603-1702  Mt_ATP-synt_B superfamily
TIGR024731709-1772  flagell_FliJ
cl214771709-1772  FliJ superfamily
cd075961637-1797  BAR_SNX
cl120131637-1797  BAR superfamily
pfam051301661-1795  FlgN
cl091761661-1795  FlgN superfamily
smart002831445-1701  MA
pfam135141202-1789  AAA_27
PRK022241462-1781  PRK02224
pfam121281203-1756  DUF3584
COG11961202-1798  Smc
pfam121281199-1767  DUF3584
COG11961447-1792  Smc
TIGR021681201-1787  SMC_prok_B
COG43721561-1792  COG4372
TIGR021681201-1793  SMC_prok_B
COG11961445-1767  Smc
PRK048631446-1793  mukB
pfam015761462-1782  Myosin_tail_1
TIGR021691453-1786  SMC_prok_A
TIGR006181210-1793  sbcc
pfam135141252-1788  AAA_27
COG04191452-1795  SbcC
PTZ001211455-1772  PTZ00121
TIGR021691460-1754  SMC_prok_A
pfam057011439-1787  WEMBL
COG52811452-1788  COG5281
pfam015761450-1782  Myosin_tail_1
TIGR021681452-1788  SMC_prok_B
PRK022241445-1787  PRK02224
COG22681460-1712  YqiK
PRK048631452-1773  mukB
TIGR021681447-1776  SMC_prok_B
COG11961465-1785  Smc
TIGR026801459-1786  TIGR02680
PTZ001211475-1769  PTZ00121
pfam135141194-1794  AAA_27
COG15381492-1792  TolC
pfam015761456-1792  Myosin_tail_1
PTZ001211460-1772  PTZ00121
COG08401446-1703  Tar
TIGR026801260-1749  TIGR02680
COG32061559-1796  GumC
COG49421536-1781  EnvC
PRK022241574-1788  PRK02224
TIGR026801425-1773  TIGR02680
COG22681580-1776  YqiK
COG43721462-1705  COG4372
TIGR026801202-1792  TIGR02680
TIGR026801203-1782  TIGR02680
COG31701339-1760  FimV
PTZ001211460-1782  PTZ00121
pfam101741443-1788  Cast
COG04191473-1779  SbcC
TIGR021691519-1787  SMC_prok_A
COG30961453-1787  MukB
pfam135141546-1778  AAA_27
COG49421453-1695  EnvC
pfam127951574-1772  MscS_porin
pfam055571454-1782  MAD
TIGR027941475-1754  tolA_full
COG43721460-1651  COG4372
PRK109291483-1796  PRK10929
PRK077351476-1732  PRK07735
COG30641598-1748  TolA
COG18421493-1722  PspA
TIGR026801198-1786  TIGR02680
TIGR021691561-1793  SMC_prok_A
pfam071111561-1777  HCR
TIGR021691461-1787  SMC_prok_A
COG49421536-1782  EnvC
PRK048631579-1782  mukB
TIGR023021487-1759  aProt_lowcomp
pfam121281443-1793  DUF3584
pfam015761446-1782  Myosin_tail_1
TIGR006181489-1788  sbcc
pfam060081456-1681  Laminin_I
pfam150701488-1779  GOLGA2L5
pfam040121449-1680  PspA_IM30
pfam040121594-1781  PspA_IM30
pfam057011584-1782  WEMBL
TIGR031851451-1793  DNA_S_dndD
pfam060081559-1779  Laminin_I
COG22681459-1792  YqiK
COG30961585-1791  MukB
PTZ001211460-1722  PTZ00121
COG43721456-1730  COG4372
pfam097261332-1722  Macoilin
pfam138681455-1775  Trichoplein
COG30641569-1771  TolA
pfam071111457-1752  HCR
COG49421541-1751  EnvC
PTZ001211462-1769  PTZ00121
TIGR021681561-1792  SMC_prok_B
COG38831483-1715  CwlO1
PRK124721603-1747  PRK12472
PRK022241263-1703  PRK02224
TIGR029171444-1774  PEP_TPR_lipo
PRK102461197-1762  PRK10246
pfam040121558-1754  PspA_IM30
TIGR029711452-1718  heterocyst_DevB
pfam056221443-1792  HOOK
TIGR018431533-1783  type_I_hlyD
pfam055571461-1795  MAD
pfam007691636-1772  ERM
TIGR027941603-1772  tolA_full
COG32061445-1665  GumC
pfam101741451-1766  Cast
pfam005291636-1783  HlyD
PRK102461450-1771  PRK10246
COG07111476-1615  AtpF
COG30961492-1783  MukB
pfam071111445-1786  HCR
COG04191550-1798  SbcC
TIGR023021490-1755  aProt_lowcomp
PRK124721571-1698  PRK12472
TIGR033481555-1732  VI_IcmF
TIGR045101564-1753  mod_pep_cyc
PRK048631476-1777  mukB
COG32061457-1728  GumC
COG35991486-1638  DivIVA
COG07111690-1773  AtpF
pfam052621559-1740  Borrelia_P83
pfam138681477-1793  Trichoplein
pfam155581581-1787  DUF4659
COG35991568-1751  DivIVA
PRK144731453-1541  PRK14473
TIGR021691460-1731  SMC_prok_A
COG18421646-1781  PspA
pfam060081504-1753  Laminin_I
COG18421607-1792  PspA
COG13401457-1761  COG1340
pfam127951459-1701  MscS_porin
COG15381444-1688  TolC
COG30641454-1691  TolA
pfam060081549-1762  Laminin_I
TIGR021691624-1781  SMC_prok_A
COG47171456-1788  YhaN
PRK095101582-1778  tolA
PRK077351456-1725  PRK07735
PRK048631449-1739  mukB
COG08451536-1793  AcrA
PRK124021533-1681  PRK12402
pfam007691581-1769  ERM
pfam002611579-1782  Tropomyosin
pfam078881497-1780  CALCOCO1
TIGR029771559-1756  phageshock_pspA
pfam005291443-1615  HlyD
pfam046321528-1756  FUSC
TIGR029711646-1793  heterocyst_DevB
PRK066691462-1563  fliH
PRK112811548-1791  PRK11281
PRK073521610-1757  PRK07352
TIGR021691460-1740  SMC_prok_A
TIGR018431533-1752  type_I_hlyD
TIGR006341452-1632  recN
PRK090391644-1793  PRK09039
pfam137791487-1781  DUF4175
pfam111801539-1669  DUF2968
pfam138681582-1780  Trichoplein
PRK095101580-1742  tolA
COG29091460-1773  MalT
pfam004301701-1772  ATP-synt_B
pfam000381450-1664  Filament
pfam068181601-1782  Fez1
COG32641608-1742  MscK
COG32641460-1593  MscK
COG15381555-1750  TolC
COG15701623-1791  XseA
PRK153741586-1779  PRK15374
pfam004301690-1768  ATP-synt_B
COG32641633-1786  MscK
PRK048631187-1681  mukB
COG32641440-1643  MscK
pfam127951460-1622  MscS_porin
pfam111801445-1525  DUF2968
pfam028411711-1769  GBP_C
pfam127951452-1526  MscS_porin
PRK050351584-1772  PRK05035
pfam111801455-1519  DUF2968
pfam138511727-1789  GAS
pfam004301627-1750  ATP-synt_B
pfam068181457-1612  Fez1
pfam041111263-1335  APG6


Ontology Information


   
HPRD ID4686
Molecular ClassExtracellular matrix protein
Molecular FunctionProtein binding (GO:0005515)
Biological ProcessCell cycle (GO:0007049)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO