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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
MSI1 4440 Musashi homolog 1 (Drosophila)  12- 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
11896183   2011Cell line : -

Source : -

Sample Type : -

No. of Sample : -

Stage : -

-Up-regulation--

18471519   2011Cell line : HCT 116

Source : ATCC

Sample Type : -

No. of Sample : -

Stage : -

real-time RT-PCR and western blotting, immunohistochemistryUp-regulation-Results show the involvement of Msi-1 in cancer cell proliferation, inhibition of apoptosis, and mitotic catastrophe, suggesting an important potential mechanism for its role in tumorigenesis.

21442350   2011Cell line : -

Source : Shanghai Jiaotong University Affiliated Shanghai First People's Hospital Gastrointestinal Cancer Center.

Sample Type : Case control study

No. of Sample : 203 cases of primary colon cancer paired with noncancerous tissue and 66 lymph node metastasis (LNM) tissues

Stage : TNM Stage I-IV

Western blotting , ImmunohistochemistryUp-regulation-Msi-1 as a novel prognostic biomarker in colon cancer patients.

Aberrant overexpression of Msi-1 during metastasis of colon cancer also suggests that it is a potential therapeutic target.


Gene Details



Chromosome: 12; NC_000012.11 (120779133..120806983, complement)

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Gene Type protein coding
Gene Family RNA binding motif (RRM) containing
Description This gene encodes a protein containing two conserved tandem RNA recognition motifs. Similar proteins in other species function as RNA-binding proteins and play central roles in posttranscriptional gene regulation. Expression of this gene has been correlated with the grade of the malignancy and proliferative activity in gliomas and melanomas. A pseudogene for this gene is located on chromosome 11q13. [provided by RefSeq, Jul 2008]  
Chromosome 12
Location 12q24
Start 120339650  
End 120369180  
Strand -  
Gene Sequence

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Length 29531  
OMIM ID 603328   
HGNC ID HGNC:7330   
Unigene ID Hs.158311    
Ensembl ID ENSG00000135097   
PharmGKB ID -   

mRNA Information


mRNA ID XM_011538361.1
Exon join(6..148,308..348,908..989,1089..1173,4426..4467, 6046..6138,10128..10176,11283..11365,12162..12279, 15802..15882,17781..17837,21667..21735,22859..23046, 23549..23611,29481..29531)  
mRNA Sequence

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Length 2989  



CDS Information


   
Location join(90..148,308..348,908..989,1089..1173,4426..4467, 6046..6138,10128..10176,11283..11365,12162..12279, 15802..15882,21667..21735,22892..23046,23549..23590)
CDS Sequence

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CCDS ID -



Protein Information


      
Protein IDNP_002433.1
Protein NameMusashi homolog 1 (Drosophila)
Molecular Wt. (Da)38994
Protein Sequence

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Length 362  
Uniprot IDP40198
Ensembl Protein ID ENSP00000341725  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation12
SPhosphorylation191

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

               
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
9240PNMA14926NP_006020.4yeast 2-hybrid16169070   


Pathway Information


      
Pathway Name Pathway ID
mRNA surveillance pathway hsa03015


Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd12323110-183  RRM2_MSI
cl17169110-183  RRM_SF superfamily
cd1257622-96  RRM1_MSI
cl1716922-96  RRM_SF superfamily
cd12573106-184  RRM2_MSI2
cd1275920-96  RRM1_MSI1
cd12572110-183  RRM2_MSI1
cd1232522-93  RRM1_hnRNPA_hnRNPD_like
cd1276021-96  RRM1_MSI2
cd12327107-186  RRM2_DAZAP1
cd1257421-102  RRM1_DAZAP1
cd1257821-98  RRM1_hnRNPA_like
cd1257722-98  RRM1_Hrp1p
cd1275721-95  RRM1_hnRNPAB
cd1257522-95  RRM1_hnRNPD_like
cd12330110-184  RRM2_Hrp1p
cd12329110-184  RRM2_hnRNPD_like
cd12325111-182  RRM1_hnRNPA_hnRNPD_like
cd1275622-95  RRM1_hnRNPD
cd1275821-95  RRM1_hnRPDL
cd1233021-95  RRM2_Hrp1p
cd1276221-98  RRM1_hnRNPA2B1
cd1276121-98  RRM1_hnRNPA1
cd12328110-182  RRM2_hnRNPA_like
cd1232126-98  RRM1_TDP43
cd1232620-95  RRM1_hnRNPA0
cd1276321-98  RRM1_hnRNPA3
cd12578110-187  RRM1_hnRNPA_like
cd1232721-97  RRM2_DAZAP1
cd1238219-90  RRM_RBMX_like
cd12579110-188  RRM2_hnRNPA0
cd12326107-184  RRM1_hnRNPA0
cd1232921-95  RRM2_hnRNPD_like
cd1238420-95  RRM_RBM24_RBM38_like
cd1232821-93  RRM2_hnRNPA_like
cd1239921-98  RRM_HP0827_like
cd12582109-188  RRM2_hnRNPA3
cd1244921-90  RRM_CIRBP_RBM3
cd12580109-184  RRM2_hnRNPA1
cd12584109-184  RRM2_hnRNPAB
cd12757110-184  RRM1_hnRNPAB
cd12585110-184  RRM2_hnRPDL
cd12574110-190  RRM1_DAZAP1
pfam0007623-90  RRM_1
cd12756111-184  RRM1_hnRNPD
cd12581109-188  RRM2_hnRNPA2B1
cd12575111-184  RRM1_hnRNPD_like
cd12242110-182  RRM_SLIRP
cd12382110-184  RRM_RBMX_like
cd12583110-184  RRM2_hnRNPD
cd1241523-88  RRM3_RBM28_like
cd12384109-184  RRM_RBM24_RBM38_like
cd0059023-90  RRM_SF
cd12399110-168  RRM_HP0827_like
cd1224221-91  RRM_SLIRP
cd1258521-95  RRM2_hnRPDL
cd12761109-184  RRM1_hnRNPA1
pfam00076111-177  RRM_1
cd12577111-187  RRM1_Hrp1p
cd12762109-184  RRM1_hnRNPA2B1
cd00590111-182  RRM_SF
cd1258418-95  RRM2_hnRNPAB
cd12760110-184  RRM1_MSI2
cd12758110-185  RRM1_hnRPDL
cd1258221-99  RRM2_hnRNPA3
cd12449110-161  RRM_CIRBP_RBM3
cd1258021-86  RRM2_hnRNPA1
cd1241219-91  RRM_DAZL_BOULE
cd1244721-90  RRM1_gar2
cd12412110-184  RRM_DAZL_BOULE
cd12763109-184  RRM1_hnRNPA3
cd1258321-95  RRM2_hnRNPD
cd1267422-82  RRM1_Nop4p
cd12321110-187  RRM1_TDP43
cd12363113-164  RRM_TRA2
cd12447110-184  RRM1_gar2
cd12322109-179  RRM2_TDP43
cd1231621-91  RRM3_RBM19_RRM2_MRD1
cd12361110-159  RRM1_2_CELF1-6_like
cd12284111-161  RRM2_RBM23_RBM39
cd1258121-99  RRM2_hnRNPA2B1
cd1257921-99  RRM2_hnRNPA0
cd1241323-82  RRM1_RBM28_like
cd1238023-103  RRM3_I_PABPs
cd1236121-68  RRM1_2_CELF1-6_like
cd1232220-90  RRM2_TDP43
cd1235322-80  RRM2_TIA1_like
cd12415109-168  RRM3_RBM28_like
cd12353111-165  RRM2_TIA1_like
cd1231124-91  RRM_SRSF2_SRSF8
cd1245022-98  RRM1_NUCLs
cd12380111-187  RRM3_I_PABPs
cd12450111-187  RRM1_NUCLs
cd12316110-158  RRM3_RBM19_RRM2_MRD1
cd12413111-183  RRM1_RBM28_like
cd1238922-96  RRM2_RAVER
cd12619111-165  RRM2_PUB1
cd12632110-173  RRM1_CELF3_4_5_6
cd1267622-87  RRM3_Nop4p
cd12236109-161  RRM_snRNP70
cd1236326-68  RRM_TRA2
cd12371110-161  RRM2_PUF60
cd1265032-96  RRM1_Hu
cd1256721-69  RRM3_RBM19
cd1223718-90  RRM_snRNP35
cd1267022-78  RRM2_Nop12p_like
cd1261922-80  RRM2_PUB1
cd12400111-177  RRM_Nop6
cd12347111-161  RRM_PPIE
cd12365111-165  RRM_RNPS1
cd1267319-81  RRM_BOULE
cd12408116-168  RRM_eIF3G_like
cd1228422-70  RRM2_RBM23_RBM39
cd1223622-70  RRM_snRNP70
cd1239823-72  RRM_CSTF2_RNA15_like
cd1263217-102  RRM1_CELF3_4_5_6
cd1237532-96  RRM1_Hu_like
cd1277122-98  RRM1_HuB
cd12229110-183  RRM_G3BP
cd1277022-98  RRM1_HuD
cd1238321-70  RRM_RBM42
cd12306111-165  RRM_II_PABPs
cd12226111-161  RRM_NOL8
cd1239523-81  RRM2_RBM34
cd12307123-182  RRM_NIFK_like
cd1234722-71  RRM_PPIE
cd12674111-161  RRM1_Nop4p
cd12454111-174  RRM2_RIM4_like
cd12617111-157  RRM2_TIAR
cd12566108-163  RRM2_MRD1
cd12298110-177  RRM3_Prp24
cd12311113-166  RRM_SRSF2_SRSF8
cd1263521-72  RRM2_CELF3_4_5_6
cd1240022-90  RRM_Nop6
cd1227123-88  RRM1_PHIP1
cd12398111-164  RRM_CSTF2_RNA15_like
cd1240827-70  RRM_eIF3G_like
cd12407124-183  RRM_FOX1_like
cd1277222-98  RRM1_HuC
cd1231823-91  RRM5_RBM19_like
cd1233522-68  RRM2_SF3B4
cd12313108-184  RRM1_RRM2_RBM5_like
cd12673110-166  RRM_BOULE
cd1241117-71  RRM_ist3_like
cd12395111-169  RRM2_RBM34
cd12411111-158  RRM_ist3_like
cd1241427-79  RRM2_RBM28_like
cd1256621-88  RRM2_MRD1
cd12243111-160  RRM1_MSSP
cd1263621-68  RRM2_Bruno_like
cd1263421-72  RRM2_CELF1_2
cd12618111-157  RRM2_TIA1
cd12370110-158  RRM1_PUF60
cd12362111-159  RRM3_CELF1-6
cd1227922-96  RRM_TUT1
cd1244822-84  RRM2_gar2
cd12567108-157  RRM3_RBM19
cd1233220-66  RRM1_p54nrb_like
cd1230623-90  RRM_II_PABPs
cd1222913-79  RRM_G3BP
cd12283111-165  RRM1_RBM39_like
cd12676111-160  RRM3_Nop4p
cd1264115-90  RRM_TRA2B
cd1267219-80  RRM_DAZL
cd1238121-69  RRM4_I_PABPs
cd1230736-81  RRM_NIFK_like
cd12417111-179  RRM_SAFB_like
cd12641113-161  RRM_TRA2B
cd12237109-160  RRM_snRNP35
cd1236222-68  RRM3_CELF1-6
cd12334111-169  RRM1_SF3B4
cd1231326-68  RRM1_RRM2_RBM5_like
cd1227223-79  RRM2_PHIP1
cd1223522-68  RRM_PPIL4
cd1263721-75  RRM2_FCA
cd12391111-166  RRM1_SART3
cd1260621-83  RRM1_RBM4
cd1261220-98  RRM2_SECp43
cd1255222-70  RRM_Nop15p
cd1261822-80  RRM2_TIA1
cd12672103-172  RRM_DAZL
cd1234520-78  RRM2_SECp43_like
cd12290111-190  RRM1_LARP7
cd1237020-68  RRM1_PUF60
cd12470111-186  RRM1_MSSP1
cd12231110-184  RRM2_U2AF65
cd1245418-90  RRM2_RIM4_like
cd12383110-184  RRM_RBM42
cd1233620-75  RRM_RBM7_like
cd12613111-161  RRM2_NGR1_NAM8_like
cd1261722-71  RRM2_TIAR
cd12448111-165  RRM2_gar2
cd12291111-168  RRM1_La
cd12387111-169  RRM3_hnRNPM_like
cd1229821-91  RRM3_Prp24
cd1236732-68  RRM2_RBM45
cd12406109-187  RRM4_NCL
cd12586110-164  RRM1_PSP1
cd12397111-166  RRM2_Nop13p_fungi
cd1235722-84  RRM_PPARGC1A_like
cd12679109-179  RRM_SAFB1_SAFB2
cd12606110-176  RRM1_RBM4
cd1261322-80  RRM2_NGR1_NAM8_like
cd1256532-68  RRM1_MRD1
cd1239123-88  RRM1_SART3
cd12637110-161  RRM2_FCA
cd1239722-78  RRM2_Nop13p_fungi
cd1237121-68  RRM2_PUF60
cd1236524-76  RRM_RNPS1
cd12588110-164  RRM1_p54nrb
cd1237622-68  RRM2_Hu_like
cd12271111-165  RRM1_PHIP1
cd12332110-165  RRM1_p54nrb_like
cd1222322-79  RRM_SR140
cd12345111-161  RRM2_SECp43_like
cd12337110-177  RRM1_SRSF4_like
cd1224022-73  RRM_NCBP2
cd1223121-80  RRM2_U2AF65
cd12354111-181  RRM3_TIA1_like
cd1240736-91  RRM_FOX1_like
cd12343110-177  RRM1_2_CoAA_like
cd1234321-90  RRM1_2_CoAA_like
cd12404109-168  RRM2_NCL
cd1236631-90  RRM1_RBM45
cd1263121-68  RRM1_CELF1_2_Bruno
cd1237823-78  RRM1_I_PABPs
cd12564110-180  RRM1_RBM19
cd12642113-161  RRM_TRA2A
cd1229023-100  RRM1_LARP7
cd1232020-69  RRM6_RBM19_RRM5_MRD1
cd1255922-90  RRM_SRSF10
cd12471111-165  RRM1_MSSP2
cd12472111-165  RRM1_RBMS3
cd12249111-178  RRM1_hnRNPR_like
cd12414110-159  RRM2_RBM28_like
cd1228323-79  RRM1_RBM39_like
cd1260821-80  RRM1_CoAA
cd12633110-165  RRM1_FCA
cd12320109-171  RRM6_RBM19_RRM5_MRD1
cd12774107-158  RRM2_HuD
cd12775107-158  RRM2_HuB
cd12565110-172  RRM1_MRD1
cd12357111-158  RRM_PPARGC1A_like
cd12272111-165  RRM2_PHIP1
cd12552111-187  RRM_Nop15p
cd12341110-168  RRM_hnRNPC_like
cd1233423-78  RRM1_SF3B4
cd12375116-177  RRM1_Hu_like
cd1257120-83  RRM6_RBM19
cd1237722-67  RRM3_Hu
cd1234623-80  RRM3_NGR1_NAM8_like
cd1245121-86  RRM2_NUCLs
cd1264932-98  RRM1_SXL
cd12367121-157  RRM2_RBM45
cd1237223-91  RRM_CFIm68_CFIm59
cd12389111-161  RRM2_RAVER
cd12235111-165  RRM_PPIL4
cd1226023-90  RRM2_SREK1
cd1222623-68  RRM_NOL8
cd12355110-183  RRM_RBM18
cd1258620-66  RRM1_PSP1
cd1276922-98  RRM1_HuR
cd12377111-156  RRM3_Hu
cd1241820-68  RRM_Aly_REF_like
cd12393111-184  RRM_ZCRB1
cd12392109-161  RRM2_SART3
cd1245832-81  RRM_AtC3H46_like
cd1237321-70  RRM_SRSF3_like
cd12636109-159  RRM2_Bruno_like
cd1272320-87  RRM1_CPEB1
pfam1389336-96  RRM_5
cd1264226-68  RRM_TRA2A
cd12223108-180  RRM_SR140
cd12571110-161  RRM6_RBM19
cd12650107-165  RRM1_Hu
cd12401112-177  RRM_eIF4H
cd12372111-177  RRM_CFIm68_CFIm59
cd1265522-70  RRM3_HuC
cd12376111-158  RRM2_Hu_like
cd12773111-163  RRM2_HuR
cd12776111-165  RRM2_HuC
cd1265222-68  RRM2_Hu
cd12671111-161  RRM_CSTF2_CSTF2T
cd1277522-68  RRM2_HuB
cd1277422-68  RRM2_HuD
cd12595110-185  RRM1_SRSF5
cd1263321-78  RRM1_FCA
cd12312109-158  RRM_SRSF10_SRSF12
cd1265122-68  RRM2_SXL
cd1239320-71  RRM_ZCRB1
cd12670111-165  RRM2_Nop12p_like
cd1265622-70  RRM3_HuD
cd1235222-70  RRM1_TIA1_like
cd1240422-90  RRM2_NCL
cd12458121-166  RRM_AtC3H46_like
cd12254111-180  RRM_hnRNPH_ESRPs_RBM12_like
cd12524106-157  RRM1_MEI2_like
cd12656111-161  RRM3_HuD
cd1235420-69  RRM3_TIA1_like
cd12635109-159  RRM2_CELF3_4_5_6
cd1233721-90  RRM1_SRSF4_like
cd12678111-172  RRM_SLTM
cd12251109-186  RRM3_hnRNPR_like
cd1266524-96  RRM2_RAVER1
cd1267122-72  RRM_CSTF2_CSTF2T
cd1231922-95  RRM4_MRD1
cd12559111-158  RRM_SRSF10
cd1266624-96  RRM2_RAVER2
cd12731115-189  RRM2_hnRNPH_hnRNPH2_hnRNPF
cd1239218-95  RRM2_SART3
cd12550111-164  RRM_II_PABPN1
cd12655111-161  RRM3_HuC
cd1225020-68  RRM2_hnRNPR_like
cd1238723-91  RRM3_hnRNPM_like
cd1256022-70  RRM_SRSF12
cd1229123-81  RRM1_La
cd1258720-86  RRM1_PSF
cd12309106-165  RRM2_Spen
cd12381110-177  RRM4_I_PABPs
cd1277322-79  RRM2_HuR
cd12310111-161  RRM3_Spen
cd1246313-79  RRM_G3BP1
cd12587110-164  RRM1_PSF
cd12483110-174  RRM1_hnRNPQ
cd1241627-68  RRM4_RBM28_like
cd12608110-179  RRM1_CoAA
cd12378112-177  RRM1_I_PABPs
cd1231222-70  RRM_SRSF10_SRSF12
cd12346111-159  RRM3_NGR1_NAM8_like
cd12640111-161  RRM3_Bruno_like
cd1222722-95  RRM_SCAF4_SCAF8
cd12373110-167  RRM_SRSF3_like
cd12344111-166  RRM1_SECp43_like
cd1264520-90  RRM_SRSF3
cd1258821-66  RRM1_p54nrb
cd12336111-169  RRM_RBM7_like
cd12505115-180  RRM2_GRSF1
cd1237918-71  RRM2_I_PABPs
cd12771111-186  RRM1_HuB
cd12279111-185  RRM_TUT1
cd12770111-186  RRM1_HuD
cd1245920-81  RRM1_CID8_like
cd1240622-68  RRM4_NCL
cd1240119-95  RRM_eIF4H
cd12652111-158  RRM2_Hu
pfam13893125-184  RRM_5
cd1265322-70  RRM3_HuR
cd12508115-180  RRM2_ESRPs_Fusilli
cd12318111-168  RRM5_RBM19_like
cd12305111-180  RRM_NELFE
cd1265422-70  RRM3_HuB
cd12551111-169  RRM_II_PABPN1L
cd1234424-78  RRM1_SECp43_like
cd1222420-85  RRM_RBM22
cd12315110-184  RRM1_RBM19_MRD1
cd1277622-68  RRM2_HuC
cd12772111-186  RRM1_HuC
cd1246418-78  RRM_G3BP2
cd1235022-78  RRM3_SHARP
cd12486110-176  RRM1_ACF
cd1230922-70  RRM2_Spen
cd12403111-184  RRM1_NCL
cd12769111-186  RRM1_HuR
cd1253636-74  RRM1_RBM39
cd1262422-68  RRM_PRC
cd12654111-161  RRM3_HuB
cd12482110-168  RRM1_hnRNPR
cd1231531-72  RRM1_RBM19_MRD1
cd1224323-68  RRM1_MSSP
cd12504115-180  RRM2_hnRNPH_like
cd1224633-70  RRM1_U1A_like
cd12541114-182  RRM2_La
cd1236832-68  RRM3_RBM45
cd12394107-136  RRM1_RBM34
cd12402112-161  RRM_eIF4B
cd12366119-158  RRM1_RBM45
cd12662110-169  RRM3_MYEF2
cd1244420-44  RRM1_CPEBs
cd1248321-87  RRM1_hnRNPQ
cd12560111-158  RRM_SRSF12
cd12680110-159  RRM_THOC4
cd12240111-161  RRM_NCBP2
cd12631110-157  RRM1_CELF1_2_Bruno
cd1252323-80  RRM2_MRN1
cd1225131-97  RRM3_hnRNPR_like
cd12561111-159  RRM1_RBM5_like
cd1255022-79  RRM_II_PABPN1
cd1250526-91  RRM2_GRSF1
cd1235521-90  RRM_RBM18
cd12273111-168  RRM1_NEFsp
smart00360110-181  RRM
smart0036021-91  RRM
COG072411-161  RRM
TIGR0162832-339  PABP-1234
TIGR016222-157  SF-CC1
TIGR0166132-161  ELAV_HUD_SF
COG072499-187  RRM
PLN0313421-115  PLN03134
TIGR0164520-158  half-pint
pfam14259111-180  RRM_6
pfam1425923-90  RRM_6
PLN03134108-187  PLN03134
TIGR0162822-161  PABP-1234
TIGR0162219-70  SF-CC1
TIGR0164818-203  hnRNP-R-Q
TIGR0162297-165  SF-CC1
TIGR0165937-157  sex-lethal
TIGR01661Mar-67  ELAV_HUD_SF
TIGR0164212-106  U2AF_lg
TIGR01661111-161  ELAV_HUD_SF
TIGR01642110-177  U2AF_lg
TIGR0164532-79  half-pint
TIGR01661106-186  ELAV_HUD_SF
TIGR0165922-68  sex-lethal


Ontology Information


   
HPRD ID3669
Molecular ClassRNA binding protein
Molecular FunctionDNA binding (GO:0003677)
Biological ProcessRegulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism (GO:0019219)  



SNP Information


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Drug Information


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External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO