Search results:
General Information
| Gene_Symbol | Gene_ID | Gene_Name | Chromosome | Alias |
|---|---|---|---|---|
| ATR | 545 | ATR serine/threonine kinase  | 3 | FRP1, SCKL, SCKL1, MEC1  |
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 19570909    | 2009 | Cell line : HCT116, RKO Source : ATCC Sample Type : - No. of Sample : - Stage : - | Immunoblotting,Chromosome Preparation,Fragile Site Analysis,Immunofluorescence,Clonogenic Survival Assay,MTS Assay,G2/M Assay | Mutation | - | Clinical data has recently shown the presence of heterozygous mutations in ATR and Chk1 in human cancers that exhibit MSI, suggesting that those mutations may contribute to tumorigenesis |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | - |
| Description | The protein encoded by this gene belongs the PI3/PI4-kinase family, and is most closely related to ATM, a protein kinase encoded by the gene mutated in ataxia telangiectasia. This protein and ATM share similarity with Schizosaccharomyces pombe rad3, a cell cycle checkpoint gene required for cell cycle arrest and DNA damage repair in response to DNA damage. This kinase has been shown to phosphorylate checkpoint kinase CHK1, checkpoint proteins RAD17, and RAD9, as well as tumor suppressor protein BRCA1. Mutations of this gene are associated with Seckel syndrome. An alternatively spliced transcript variant of this gene has been reported, however, its full length nature is not known. Transcript variants utilizing alternative polyA sites exist. [provided by RefSeq, Jul 2008]   |
| Chromosome | 3 |
| Location | 3q23 |
| Start | 142168077   |
| End | 142297668   |
| Strand | -   |
| Gene Sequence |    Download   Select all |
| Length | 129592   |
| OMIM ID | 601215    |
| HGNC ID | HGNC:882    |
| Unigene ID | Hs.271791    |
| Ensembl ID | ENSG00000175054    |
| PharmGKB ID | PA74    |
mRNA Information
| mRNA ID | NM_001184.3 |
|---|---|
| Exon | join(1..181,10673..10764,12566..12706,15718..16595, 17406..17584,18373..18564,19386..19576,20051..20203, 22252..22444,22688..22950,24812..25002,25087..25187, 25429..25600,28525..28695,29154..29348,30917..31102, 36070..36162,37793..37923,40202..40345,42626..42719, 43622..43747,54628..54834,55986..56099,59043..59158, 63312..63432,65189..65326,66357..66567,70718..70896, 73524..73688,75374..75465,79109..79200,80053..80230, 81635..81814,82307..82466,85516..85695,93545..93687, 108644..108741,109258..109490,110759..110893, 112294..112503,113587..113730,116737..116887, 119444..119600,119716..119869,121072..121223, 125594..125699,129225..129592)   | mRNA Sequence |    Download   Select all |
| Length | 8258   |
CDS Information
| Location | 123..8057 |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | CCDS3124.1 |    
Protein Information
| Protein ID | NP_001175.2 |
|---|---|
| Protein Name | ATR serine/threonine kinase |
| Molecular Wt. (Da) | 301237 |
| Protein Sequence |    Download   Select all |
| Length | 2644   |
| Uniprot ID | P08235 |    
| Ensembl Protein ID | ENSP00000421481   |    
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| T | Phosphorylation | 1989 |
| S | Phosphorylation | 480 |
| S | Phosphorylation | 549 |
| S | Phosphorylation | 919 |
| S | Phosphorylation | 436 |
| S | Phosphorylation | 437 |
| S | Phosphorylation | 435 |
| S | Phosphorylation | 428 |
| S | Phosphorylation | 1875 |
| S | Phosphorylation | 1154 |
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING)      View   
| Interactant Gene ID (Source: HPRD) | Gene Symbol | HPRD ID | Ref Seq ID | Technique | References |
|---|---|---|---|---|---|
| 672 |    BRCA1 |    218 |    NP_009231.2 |    in vitro;in vivo |    1   111   488   811   278   960    |
| 1111 |    CHEK1 |    4356 |    NP_001265.2 |    in vitro;in vivo |    1   139   064   211   252   890    |
| 1869 |    E2F1 |    1806 |    NP_005216.1 |    in vitro |    11459832    |
| 2321 |    FLT1 |    1297 |    NP_002010.2 |    in vitro;in vivo;yeast 2-hybrid |    10749680    |
| 3791 |    KDR |    1867 |    NP_002244.1 |    in vitro;in vivo;yeast 2-hybrid |    10749680    |
| 4436 |    MSH2 |    389 |    NP_000242.1 |    in vitro;in vivo |    14657349    |
| 4683 |    NBN |    4050 |    NP_002476.2 |    in vivo |    15758953    |
| 5884 |    RAD17 |    9124 |    NP_579917.1 |    in vitro;in vivo |    1   141   886   410   608   800    |
| 6009 |    RHEB |    3188 |    NP_005605.1 |    in vitro |    15854902    |
| 7157 |    TP53 |    1859 |    NP_000537.3 |    in vitro;in vivo |    9   765   199   115   519   300   000   000   000   000   000   000   000   000   000   000   000   000   000    |
| 7507 |    XPA |    2045 |    NP_000371.1 |    in vitro;in vivo |    16540648    |
| 7520 |    XRCC5 |    8935 |    NP_066964.1 |    in vivo |    15758953    |
| 9521 |    EEF1E1 |    10931 |    NP_004271.1 |    in vitro;in vivo |    15680327    |
| 11200 |    CHEK2 |    5084 |    NP_001005735.1 |    in vitro;in vivo |    117   150   179   857   181   000   000   000   000   000   000   000   000    |
| 11277 |    TREX1 |    9423 |    NP_569055.1 |    in vitro;in vivo |    11721054    |
| 63967 |    CLSPN |    9257 |    NP_071394.2 |    in vitro;in vivo |    12766152    |
Pathway Information
| Pathway Name | Pathway ID |
|---|---|
| Cell cycle |    hsa04110 |    
| Fanconi anemia pathway |    hsa03460 |    
| HTLV-I infection |    hsa05166 |    
| p53 signaling pathway |    hsa04115 |    
Structure Information
No matching records could be found.
Domain Information
| ID | Location | Description |
|---|---|---|
| cd00892 | 2293-2567  | PIKKc_ATR |
| cl21453 | 2293-2567  | PKc_like superfamily |
| cd05164 | 2293-2560  | PIKKc |
| cd05171 | 2293-2566  | PIKKc_ATM |
| smart00146 | 2324-2567  | PI3Kc |
| pfam00454 | 2322-2567  | PI3_PI4_kinase |
| cd05169 | 2293-2566  | PIKKc_TOR |
| cd05170 | 2293-2567  | PIKKc_SMG1 |
| cd05172 | 2293-2567  | PIKKc_DNA-PK |
| cd00142 | 2302-2560  | PI3Kc_like |
| smart00802 | 1119-1224  | UME |
| cl06893 | 1119-1224  | UME superfamily |
| pfam08064 | 1119-1224  | UME |
| cd05163 | 2310-2567  | PIKK_TRRAP |
| cd00896 | 2214-2536  | PI3Kc_III |
| cd05166 | 2304-2559  | PI3Kc_II |
| cd05167 | 2327-2541  | PI4Kc_III_alpha |
| cd00891 | 2308-2537  | PI3Kc |
| pfam02260 | 2612-2644  | FATC |
| cl03505 | 2612-2644  | FATC superfamily |
| cd00893 | 2327-2524  | PI4Kc_III |
| cd05168 | 2324-2536  | PI4Kc_III_beta |
| cd05173 | 2327-2544  | PI3Kc_IA_beta |
| cd05174 | 2223-2544  | PI3Kc_IA_delta |
| cd05165 | 2301-2546  | PI3Kc_I |
| cd05176 | 2309-2564  | PI3Kc_C2_alpha |
| cd00894 | 2301-2527  | PI3Kc_IB_gamma |
| pfam02259 | 1771-2092  | FAT |
| COG5032 | 2133-2644  | TEL1 |
Ontology Information
| HPRD ID | 4656 |    
|---|---|
| Molecular Class | Serine/threonine kinase |
| Molecular Function | Intracellular ligand-gated ion channel activity (GO:0005217) |
| Biological Process | Transport (GO:0006810)   |
Drug Information
No matching records could be found.
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    
