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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
ATR 545 ATR serine/threonine kinase  3FRP1, SCKL, SCKL1, MEC1 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
19570909   2009Cell line : HCT116, RKO

Source : ATCC

Sample Type : -

No. of Sample : -

Stage : -

Immunoblotting,Chromosome Preparation,Fragile Site Analysis,Immunofluorescence,Clonogenic Survival Assay,MTS Assay,G2/M AssayMutation-Clinical data has recently shown the presence of heterozygous mutations in ATR and Chk1 in human cancers that exhibit MSI, suggesting that those mutations may contribute to tumorigenesis


Gene Details



NC_000003.11 (142168077..142297668, complement)

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Gene Type protein coding
Gene Family -
Description The protein encoded by this gene belongs the PI3/PI4-kinase family, and is most closely related to ATM, a protein kinase encoded by the gene mutated in ataxia telangiectasia. This protein and ATM share similarity with Schizosaccharomyces pombe rad3, a cell cycle checkpoint gene required for cell cycle arrest and DNA damage repair in response to DNA damage. This kinase has been shown to phosphorylate checkpoint kinase CHK1, checkpoint proteins RAD17, and RAD9, as well as tumor suppressor protein BRCA1. Mutations of this gene are associated with Seckel syndrome. An alternatively spliced transcript variant of this gene has been reported, however, its full length nature is not known. Transcript variants utilizing alternative polyA sites exist. [provided by RefSeq, Jul 2008]  
Chromosome 3
Location 3q23
Start 142168077  
End 142297668  
Strand -  
Gene Sequence

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Length 129592  
OMIM ID 601215   
HGNC ID HGNC:882   
Unigene ID Hs.271791   
Ensembl ID ENSG00000175054   
PharmGKB ID PA74   

mRNA Information


mRNA ID NM_001184.3
Exon join(1..181,10673..10764,12566..12706,15718..16595, 17406..17584,18373..18564,19386..19576,20051..20203, 22252..22444,22688..22950,24812..25002,25087..25187, 25429..25600,28525..28695,29154..29348,30917..31102, 36070..36162,37793..37923,40202..40345,42626..42719, 43622..43747,54628..54834,55986..56099,59043..59158, 63312..63432,65189..65326,66357..66567,70718..70896, 73524..73688,75374..75465,79109..79200,80053..80230, 81635..81814,82307..82466,85516..85695,93545..93687, 108644..108741,109258..109490,110759..110893, 112294..112503,113587..113730,116737..116887, 119444..119600,119716..119869,121072..121223, 125594..125699,129225..129592)  
mRNA Sequence

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Length 8258  



CDS Information


   
Location123..8057
CDS Sequence

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CCDS ID CCDS3124.1



Protein Information


      
Protein IDNP_001175.2
Protein NameATR serine/threonine kinase
Molecular Wt. (Da)301237
Protein Sequence

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Length 2644  
Uniprot IDP08235
Ensembl Protein ID ENSP00000421481  



Post-translational Modification Information (Source : HPRD)


Residue Type site
TPhosphorylation1989
SPhosphorylation480
SPhosphorylation549
SPhosphorylation919
SPhosphorylation436
SPhosphorylation437
SPhosphorylation435
SPhosphorylation428
SPhosphorylation1875
SPhosphorylation1154

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                                                                                                                                                
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
672BRCA1218NP_009231.2in vitro;in vivo1   111   488   811   278   960   
1111CHEK14356NP_001265.2in vitro;in vivo1   139   064   211   252   890   
1869E2F11806NP_005216.1in vitro11459832   
2321FLT11297NP_002010.2in vitro;in vivo;yeast 2-hybrid10749680   
3791KDR1867NP_002244.1in vitro;in vivo;yeast 2-hybrid10749680   
4436MSH2389NP_000242.1in vitro;in vivo14657349   
4683NBN4050NP_002476.2in vivo15758953   
5884RAD179124NP_579917.1in vitro;in vivo1   141   886   410   608   800   
6009RHEB3188NP_005605.1in vitro15854902   
7157TP531859NP_000537.3in vitro;in vivo9   765   199   115   519   300   000   000   000   000   000   000   000   000   000   000   000   000   000   
7507XPA2045NP_000371.1in vitro;in vivo16540648   
7520XRCC58935NP_066964.1in vivo15758953   
9521EEF1E110931NP_004271.1in vitro;in vivo15680327   
11200CHEK25084NP_001005735.1in vitro;in vivo117   150   179   857   181   000   000   000   000   000   000   000   000   
11277TREX19423NP_569055.1in vitro;in vivo11721054   
63967CLSPN9257NP_071394.2in vitro;in vivo12766152   


Pathway Information


                        
Pathway Name Pathway ID
Cell cycle hsa04110
Fanconi anemia pathway hsa03460
HTLV-I infection hsa05166
p53 signaling pathway hsa04115


Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd008922293-2567  PIKKc_ATR
cl214532293-2567  PKc_like superfamily
cd051642293-2560  PIKKc
cd051712293-2566  PIKKc_ATM
smart001462324-2567  PI3Kc
pfam004542322-2567  PI3_PI4_kinase
cd051692293-2566  PIKKc_TOR
cd051702293-2567  PIKKc_SMG1
cd051722293-2567  PIKKc_DNA-PK
cd001422302-2560  PI3Kc_like
smart008021119-1224  UME
cl068931119-1224  UME superfamily
pfam080641119-1224  UME
cd051632310-2567  PIKK_TRRAP
cd008962214-2536  PI3Kc_III
cd051662304-2559  PI3Kc_II
cd051672327-2541  PI4Kc_III_alpha
cd008912308-2537  PI3Kc
pfam022602612-2644  FATC
cl035052612-2644  FATC superfamily
cd008932327-2524  PI4Kc_III
cd051682324-2536  PI4Kc_III_beta
cd051732327-2544  PI3Kc_IA_beta
cd051742223-2544  PI3Kc_IA_delta
cd051652301-2546  PI3Kc_I
cd051762309-2564  PI3Kc_C2_alpha
cd008942301-2527  PI3Kc_IB_gamma
pfam022591771-2092  FAT
COG50322133-2644  TEL1


Ontology Information


   
HPRD ID4656
Molecular ClassSerine/threonine kinase
Molecular FunctionIntracellular ligand-gated ion channel activity (GO:0005217)
Biological ProcessTransport (GO:0006810)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO