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General Information

• Evidence
• Gene
• mRNA
• CDS
• Protein
• PTM
• Enzyme
• PPi
• Pathway
• Structural
• Domain
• Ontology
• SNP
• Drug
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Evidence Information

Pubmed ID	Year	Sample Information	Techniques	Mechanism	Fold Change	Remark
21733561	2012	Cell line : - Source : - Sample Type : CRC tumor and normal tissue No. of Sample : 31 gastric cancers with high microsatellite instability, 13 gastric cancers with low microsatellite instability, and 45 gastric cancers with stable microsatellites and 40 colorectal cancers with high microsatellite instability, 14 colorectal cancers Stage : -	SSCP	Frameshift Mutation	-	Frameshift mutations of VPS genes and losses of expression of Vps13A and Vps35 proteins are common in gastric cancers and colorectal cancers with high microsatellite instability and suggest that these alterations might contribute to development of cancers with high microsatellite instability by deregulating vacuolar protein sorting proteins.

Gene Details

NC_000015.9 (62144588..62352664, complement)
View Larger Image   

Gene Type	protein coding
Gene Family	-
Description	This gene encodes a member of the vacuolar protein sorting-associated 13 gene family. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Oct 2010]
Chromosome	15
Location	15q21.3
Start	62144588
End	62352664
Strand	-
Gene Sequence	Download   Select all
Length	208077
OMIM ID	608879
HGNC ID	HGNC:23594
Unigene ID	Hs.511668
Ensembl ID	ENSG00000129003
PharmGKB ID	PA134990089

mRNA Information

mRNA ID	?NM_001018088.2
Exon
mRNA Sequence	Download   Select all
Length

CDS Information

   

Location
CDS Sequence	Download   Select all
CCDS ID	CCDS10180.1

Protein Information

      

Protein ID	NP_001018098.1
Protein Name	vacuolar protein sorting 13 homolog C (S. cerevisiae)
Molecular Wt. (Da)	0
Protein Sequence	Download   Select all
Length	3753
Uniprot ID	Q9HB63
Ensembl Protein ID	ENSP00000340998

Post-translational Modification Information (Source : HPRD)

Residue	Type	site
T	Phosphorylation	1394;-
S	Phosphorylation	1399;-
S	Phosphorylation	1442;-
T	Phosphorylation	1437;-
T	Phosphorylation	1394;-
S	Phosphorylation	1399;-
S	Phosphorylation	1442;-
T	Phosphorylation	1437;-
T	Phosphorylation	691
T	Phosphorylation	734
T	Phosphorylation	691
T	Phosphorylation	734
S	Phosphorylation	694
S	Phosphorylation	737
S	Phosphorylation	694
S	Phosphorylation	737
K	Acetylation	3495
K	Acetylation	3538
K	Acetylation	3495
K	Acetylation	3538
T	Phosphorylation	499
T	Phosphorylation	542
T	Phosphorylation	499
T	Phosphorylation	542
S	Phosphorylation	693
S	Phosphorylation	736
S	Phosphorylation	693
S	Phosphorylation	736
S	Phosphorylation	1620
S	Phosphorylation	1663
S	Phosphorylation	1620
S	Phosphorylation	1663
T	Phosphorylation	1833
T	Phosphorylation	1859
T	Phosphorylation	1876
T	Phosphorylation	1902
T	Phosphorylation	1833
T	Phosphorylation	1859
T	Phosphorylation	1876
T	Phosphorylation	1902
S	Phosphorylation	2442
S	Phosphorylation	2485
S	Phosphorylation	2442
S	Phosphorylation	2485
S	Phosphorylation	3598
S	Phosphorylation	3641
T	Phosphorylation	3606
T	Phosphorylation	3649
T	Phosphorylation	519
T	Phosphorylation	562
T	Phosphorylation	519
T	Phosphorylation	562
S	Phosphorylation	1587
S	Phosphorylation	1630
S	Phosphorylation	1587
S	Phosphorylation	1630
T	Phosphorylation	2978
T	Phosphorylation	3021
T	Phosphorylation	2978
T	Phosphorylation	3021

Enzyme Information

No matching records could be found.

PPi Information

(Click to view network : Source STRING)      View   

No matching records from HPRD source could be found.

Pathway Information

No matching records could be found.

Structure Information

No matching records could be found.

Domain Information

ID	Location	Description
pfam06650	2764-3018	DUF1162
cl05933	2764-3018	DUF1162 superfamily
pfam12624	3-119	Chorein_N
cl14987	3-119	Chorein_N superfamily
pfam09333	3507-3582	ATG_C
cl07826	3507-3582	ATG_C superfamily
pfam10351	3206-3404	Apt1
cl11019	3206-3404	Apt1 superfamily
COG5043	3-1366	MRS6
COG5043	3184-3662	MRS6
COG5043	1046-2612	MRS6

Ontology Information

   

HPRD ID	9973
Molecular Class	Unclassified
Molecular Function	GTPase activity (GO:0003924)
Biological Process	Cell communication (GO:0007154); Signal transduction (GO:0007165)

SNP Information

View SNP Geneview Report   

Drug Information

No matching records could be found.

External Links

                                 

ArrayExpress	GO
ICGC	GO
Cancer3D	GO
COSMIC	GO
NCG	GO
TSGene	GO
Tumor Gene Family of Databases	GO
CCDB	GO
G2SBC	GO
Osteosarcoma Database	GO
RCDB	GO