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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
CCDC88A 55704 coiled-coil domain containing 88A  2FLJ10392, APE, GIV, HkRP1, GRDN 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
22714912   2012Cell line : -

Source : Jilin University

Sample Type : CRC tumor and normal tissue

No. of Sample : 435

Stage : -

Immunohistochemistry, Real time RT-PCRUp-regulation-Girdin was highly expressed in colorectal cancer and may be a potential biomarker for the liver metastatic tumors.


Gene Details



Chromosome 2 - NC_000002.12(55287842..55419921, complement)

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Gene Type protein coding
Gene Family
Description This gene encodes a member of the Girdin family of coiled-coil domain containing proteins. The encoded protein is an actin-binding protein that is activated by the serine/threonine kinase Akt and plays a role in cytoskeleton remodeling and cell migration. The encoded protein also enhances Akt signaling by mediating phosphoinositide 3-kinase (PI3K)-dependent activation of Akt by growth factor receptor tyrosine kinases and G protein-coupled receptors. Increased expression of this gene and phosphorylation of the encoded protein may play a role in cancer metastasis. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene.  
Chromosome 2
Location 2p16.3
Start 55287842  
End 55419921  
Strand -  
Gene Sequence

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Length 132080  
OMIM ID 609736   
HGNC ID HGNC:25523   
Unigene ID Hs.292925   
Ensembl ID ENSG00000115355   
PharmGKB ID -   

mRNA Information


mRNA ID NM_001254943.1
Exon join(1..905,1006..1106,31036..31144,45039..45108, 47412..47470,55889..55972,57474..57614,64171..64343, 70323..70404,73589..73747,75408..75554,76130..76274, 80274..80458,83104..83241,84758..85828,87229..87356, 91490..91628,97230..97394,100918..101079,102081..102358, 102573..102716,103808..103994,107343..107488, 110668..110760,110899..111113,116770..116853, 117850..118050,118645..118716,120003..120083, 123399..123664,123866..123972,124195..124325, 128147..128246,128758..132080)  
mRNA Sequence

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Length 9827  



CDS Information


   
Locationjoin(843..905,1006..1106,31036..31144,45039..45108, 47412..47470,55889..55972,57474..57614,64171..64343, 70323..70404,73589..73747,75408..75554,76130..76274, 80274..80458,83104..83241,84758..85828,87229..87356, 91490..91628,97230..97394,100918..101079,102081..102358, 102573..102716,103808..103994,107343..107488, 110668..110760,110899..111113,116770..116853,
CDS Sequence

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CCDS ID CCDS58710.1



Protein Information


      
Protein IDNP_001129069.1
Protein Namecoiled-coil domain containing 88A
Molecular Wt. (Da)215824
Protein Sequence

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Length 1870  
Uniprot IDQ13753
Ensembl Protein ID ENSP00000264144  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation1647
SPhosphorylation1674
SPhosphorylation1417
SPhosphorylation1387
TPhosphorylation1645
SPhosphorylation1650
SPhosphorylation1809
SPhosphorylation1689
YPhosphorylation1737
SPhosphorylation1278
KAcetylation739
TPhosphorylation1773
TPhosphorylation1791
SPhosphorylation1792
TPhosphorylation1419

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

No matching records from HPRD source could be found.

Pathway Information


No matching records could be found.

Structure Information


No matching records could be found.

Domain Information




ID Location Description
TIGR00219825-943  mreC
cl19252825-943  MreC superfamily
pfam12718719-843  Tropomyosin_1
cl22857719-843  Tropomyosin_1 superfamily
COG1382766-859  GimC
cl09111766-859  Prefoldin superfamily
pfam061561061-1107  DUF972
cl229211061-1107  DUF972 superfamily
pfam06156766-836  DUF972
cl22921766-836  DUF972 superfamily
PRK13922784-820  PRK13922
cl19252784-820  MreC superfamily
TIGR02894770-849  DNA_bind_RsfA
cl21524770-849  PRK13923 superfamily
PRK13922810-851  PRK13922
COG1792784-823  MreC
pfam01920766-854  Prefoldin_2
PRK13922632-688  PRK13922
cl19252632-688  MreC superfamily
pfam13476729-849  AAA_23
cl21455729-849  P-loop_NTPase superfamily
pfam0562218-668  HOOK
TIGR04523493-1205  Mplasa_alph_rch
COG1196491-1331  Smc
COG1196342-1164  Smc
COG1196582-1379  Smc
TIGR02168596-1375  SMC_prok_B
TIGR02168462-1300  SMC_prok_B
COG1196252-1086  Smc
COG1196247-985  Smc
COG1196463-1265  Smc
COG1196240-934  Smc
COG1196258-1013  Smc
TIGR02168258-1079  SMC_prok_B
TIGR02169476-1270  SMC_prok_A
TIGR02168249-1080  SMC_prok_B
PRK03918571-1073  PRK03918
PRK03918610-1224  PRK03918
TIGR02168705-1378  SMC_prok_B
COG1196711-1381  Smc
PRK03918253-890  PRK03918
PRK03918181-814  PRK03918
TIGR02169252-904  SMC_prok_A
TIGR02169594-1375  SMC_prok_A
pfam02463497-1286  SMC_N
TIGR02168645-1373  SMC_prok_B
TIGR02169252-1075  SMC_prok_A
COG1196244-837  Smc
TIGR04523465-895  Mplasa_alph_rch
COG0419114-850  SbcC
COG0419735-1300  SbcC
TIGR02169309-1185  SMC_prok_A
COG0419628-1265  SbcC
PRK03918325-935  PRK03918
TIGR02168448-1220  SMC_prok_B
COG0419376-1008  SbcC
COG0419461-1108  SbcC
PRK03918730-1321  PRK03918
TIGR04523626-1351  Mplasa_alph_rch
pfam02463616-1383  SMC_N
PRK02224313-828  PRK02224
PTZ00121339-1065  PTZ00121
TIGR00606256-1097  rad50
pfam01576460-1117  Myosin_tail_1
pfam01576253-919  Myosin_tail_1
pfam02463279-1097  SMC_N
TIGR02168477-829  SMC_prok_B
TIGR04523257-836  Mplasa_alph_rch
TIGR02169656-1377  SMC_prok_A
pfam02463166-928  SMC_N
pfam05557588-1135  MAD
TIGR02168369-751  SMC_prok_B
PRK02224244-713  PRK02224
pfam05557359-858  MAD
TIGR01612257-1377  235kDa-fam
TIGR00606252-1013  rad50
PRK02224201-669  PRK02224
TIGR00618136-847  sbcc
pfam13514658-1095  AAA_27
pfam05483585-1241  SCP-1
COG1196241-605  Smc
PRK01156419-1053  PRK01156
pfam01576250-1110  Myosin_tail_1
TIGR02168241-559  SMC_prok_B
pfam05483434-1045  SCP-1
pfam12128247-827  DUF3584
COG5022580-1245  COG5022
TIGR02169729-1151  SMC_prok_A
PTZ00121203-872  PTZ00121
pfam05622504-858  HOOK
PRK02224688-1219  PRK02224
TIGR01612252-1348  235kDa-fam
COG4942661-846  EnvC
pfam12128477-1085  DUF3584
pfam05557264-843  MAD
TIGR02168268-675  SMC_prok_B
pfam09730791-1225  BicD
pfam12128575-1217  DUF3584
pfam09730585-1152  BicD
TIGR02169339-710  SMC_prok_A
TIGR00606495-1418  rad50
pfam10174249-737  Cast
COG4717253-853  YhaN
TIGR04211752-848  SH3_and_anchor
PRK01156725-1317  PRK01156
PRK11281796-1158  PRK11281
COG4372591-845  COG4372
PHA02562575-831  46
TIGR02169249-570  SMC_prok_A
TIGR02168839-1220  SMC_prok_B
COG0419953-1377  SbcC
pfam05557778-1324  MAD
pfam05622680-1087  HOOK
TIGR042111035-1125  SH3_and_anchor
COG5022261-878  COG5022
COG4372672-873  COG4372
pfam10174241-865  Cast
PRK11281573-861  PRK11281
pfam13166249-685  AAA_13
TIGR042111063-1150  SH3_and_anchor
pfam09730637-1230  BicD
PRK01156287-888  PRK01156
TIGR00618621-1377  sbcc
pfam04111779-928  APG6
TIGR00618183-677  sbcc
TIGR04211688-801  SH3_and_anchor
pfam13166762-1095  AAA_13
TIGR02169824-1214  SMC_prok_A
TIGR02169958-1265  SMC_prok_A
PTZ00108550-903  PTZ00108
PRK12704577-695  PRK12704
COG4477537-952  EzrA
COG2433629-910  COG2433
COG1196184-421  Smc
TIGR04211625-714  SH3_and_anchor
COG4942818-1096  EnvC
COG4372992-1229  COG4372
PRK05771762-1014  PRK05771
pfam13166468-804  AAA_13
PRK01156253-714  PRK01156
pfam05911490-1080  DUF869
pfam01496561-834  V_ATPase_I
COG4372965-1147  COG4372
PTZ00440494-1301  PTZ00440
TIGR00618340-1031  sbcc
PLN02939241-622  PLN02939
pfam01496598-844  V_ATPase_I
COG4372423-646  COG4372
COG2433613-760  COG2433
pfam01576252-827  Myosin_tail_1
COG5185491-878  HEC1
TIGR00618939-1380  sbcc
COG4942918-1147  EnvC
pfam04111715-873  APG6
PRK03918882-1374  PRK03918
PRK12704554-695  PRK12704
TIGR04211716-826  SH3_and_anchor
PRK04778583-844  PRK04778
pfam06160586-844  EzrA
pfam05483820-1382  SCP-1
TIGR04211742-840  SH3_and_anchor
TIGR03007525-858  pepcterm_ChnLen
TIGR03319724-915  RNase_Y
TIGR04211766-873  SH3_and_anchor
pfam12252538-940  SidE
PLN02939716-1070  PLN02939
pfam13166792-1103  AAA_13
TIGR04211571-674  SH3_and_anchor
pfam07888626-1041  CALCOCO1
PRK05771729-926  PRK05771
pfam14662752-942  CCDC155
COG4717360-981  YhaN
pfam07888768-1100  CALCOCO1
TIGR04211786-893  SH3_and_anchor
pfam04111988-1108  APG6
pfam05557261-676  MAD
COG3206805-1022  GumC
COG11961042-1382  Smc
pfam13514252-879  AAA_27
TIGR02231625-762  TIGR02231
pfam07888361-742  CALCOCO1
pfam04111628-745  APG6
pfam04111543-678  APG6
pfam13514775-1376  AAA_27
pfam13166624-1002  AAA_13
pfam14662684-854  CCDC155
pfam10174255-1018  Cast
COG4372353-585  COG4372
PRK04863526-852  mukB
pfam04111658-804  APG6
pfam06160972-1383  EzrA
COG3096496-852  MukB
COG1269628-923  NtpI
pfam13514252-1131  AAA_27
TIGR04211974-1083  SH3_and_anchor
COG1269400-645  NtpI
COG4942343-606  EnvC
PRK00448638-940  polC
COG4717589-1220  YhaN
PRK12704706-896  PRK12704
pfam10174579-1297  Cast
TIGR03319578-694  RNase_Y
COG4372893-1132  COG4372
TIGR03185761-1013  DNA_S_dndD
TIGR04211656-747  SH3_and_anchor
pfam08614659-841  ATG16
pfam13851736-911  GAS
pfam13870758-847  DUF4201
pfam05911554-891  DUF869
PRK04863240-668  mukB
PHA02562343-572  46
pfam09726464-649  Macoilin
TIGR03185345-664  DNA_S_dndD
TIGR037521056-1142  conj_TIGR03752
PHA02562652-895  46
pfam09726592-849  Macoilin
PRK03992656-714  PRK03992
PRK10929960-1170  PRK10929
COG2433535-673  COG2433
pfam10174387-1110  Cast
pfam04156766-873  IncA
PRK04778975-1383  PRK04778
COG2433578-709  COG2433
pfam12128133-621  DUF3584
COG4942244-408  EnvC
PLN02939495-809  PLN02939
PRK12705566-742  PRK12705
PRK03992792-843  PRK03992
TIGR03346840-1014  chaperone_ClpB
COG3096625-1368  MukB
TIGR04523252-686  Mplasa_alph_rch
PRK05771434-690  PRK05771
TIGR04211263-377  SH3_and_anchor
COG4717257-623  YhaN
pfam00529950-1121  HlyD
pfam14662658-844  CCDC155
TIGR00606255-741  rad50
pfam05701620-1006  WEMBL
TIGR03752770-861  conj_TIGR03752
PRK05771507-769  PRK05771
COG2433299-408  COG2433
TIGR04211256-362  SH3_and_anchor
PRK00578726-835  prfB
pfam015761061-1327  Myosin_tail_1
pfam146621008-1146  CCDC155
PLN02939619-938  PLN02939
PRK12704495-605  PRK12704
pfam00521523-685  DNA_topoisoIV
pfam06785706-873  UPF0242
COG0497636-853  RecN
PLN03229257-605  PLN03229
PRK04863535-846  mukB
smart00435770-855  TOPEUc
pfam06785642-846  UPF0242
pfam09726600-836  Macoilin
TIGR02169244-411  SMC_prok_A
PLN03229652-1028  PLN03229
pfam05483244-753  SCP-1
PTZ00341375-1040  PTZ00341
TIGR04211809-927  SH3_and_anchor
COG4717191-750  YhaN
pfam13514241-985  AAA_27
pfam04156240-351  IncA
PRK03992625-683  PRK03992
pfam04111189-301  APG6
pfam10174723-1313  Cast
COG3264960-1180  MscK
pfam10211777-841  Ax_dynein_light
PRK11281675-894  PRK11281
pfam15070531-827  GOLGA2L5
pfam09731798-1073  Mitofilin
COG4942766-1029  EnvC
PRK12704608-732  PRK12704
TIGR03319554-695  RNase_Y
TIGR02168184-340  SMC_prok_B
pfam09789794-1009  DUF2353
TIGR03185798-1110  DNA_S_dndD
PRK00409697-892  PRK00409
TIGR042111085-1170  SH3_and_anchor
COG3096535-844  MukB
COG49421028-1225  EnvC
pfam09730253-666  BicD
COG32641242-1367  MscK
COG4942469-674  EnvC
TIGR04211247-354  SH3_and_anchor
pfam09730404-845  BicD
pfam09728728-1089  Taxilin
COG04191109-1380  SbcC
PTZ00419628-832  PTZ00419
pfam15070386-723  GOLGA2L5
COG4942744-942  EnvC
COG1193728-944  MutS2
TIGR01843761-899  type_I_hlyD
pfam05667766-1019  DUF812
TIGR03319608-742  RNase_Y
TIGR03752453-532  conj_TIGR03752
COG3883763-986  CwlO1
pfam01496724-1015  V_ATPase_I
TIGR03346779-914  chaperone_ClpB
TIGR03752706-808  conj_TIGR03752
TIGR00763657-821  lon
pfam07888821-1149  CALCOCO1
COG4913516-1074  COG4913
PRK03992808-869  PRK03992
COG2433244-368  COG2433
pfam08432775-892  Vfa1
PTZ00440339-1168  PTZ00440
PRK00409489-625  PRK00409
COG4372763-1006  COG4372
pfam14992692-834  TMCO5
PRK09039449-587  PRK09039
PRK12704882-1014  PRK12704
smart007871209-1337  Spc7
TIGR02680972-1095  TIGR02680
TIGR04211598-703  SH3_and_anchor
pfam12004773-867  DUF3498
TIGR042111089-1185  SH3_and_anchor
TIGR021681248-1380  SMC_prok_B


Ontology Information


   
HPRD ID1038
Molecular ClassCytoskeletal protein
Molecular FunctionCell adhesion molecule activity (GO:0005194)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165); Cell adhesion (GO:0007155)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO