Search results:
General Information
| Gene_Symbol | Gene_ID | Gene_Name | Chromosome | Alias |
|---|---|---|---|---|
| CCDC88A | 55704 | coiled-coil domain containing 88A  | 2 | FLJ10392, APE, GIV, HkRP1, GRDN  |
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 22714912    | 2012 | Cell line : - Source : Jilin University Sample Type : CRC tumor and normal tissue No. of Sample : 435 Stage : - | Immunohistochemistry, Real time RT-PCR | Up-regulation | - | Girdin was highly expressed in colorectal cancer and may be a potential biomarker for the liver metastatic tumors. |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | |
| Description | This gene encodes a member of the Girdin family of coiled-coil domain containing proteins. The encoded protein is an actin-binding protein that is activated by the serine/threonine kinase Akt and plays a role in cytoskeleton remodeling and cell migration. The encoded protein also enhances Akt signaling by mediating phosphoinositide 3-kinase (PI3K)-dependent activation of Akt by growth factor receptor tyrosine kinases and G protein-coupled receptors. Increased expression of this gene and phosphorylation of the encoded protein may play a role in cancer metastasis. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene.   |
| Chromosome | 2 |
| Location | 2p16.3 |
| Start | 55287842   |
| End | 55419921   |
| Strand | -   |
| Gene Sequence |    Download   Select all |
| Length | 132080   |
| OMIM ID | 609736    |
| HGNC ID | HGNC:25523    |
| Unigene ID | Hs.292925    |
| Ensembl ID | ENSG00000115355    |
| PharmGKB ID | -    |
mRNA Information
| mRNA ID | NM_001254943.1 |
|---|---|
| Exon | join(1..905,1006..1106,31036..31144,45039..45108, 47412..47470,55889..55972,57474..57614,64171..64343, 70323..70404,73589..73747,75408..75554,76130..76274, 80274..80458,83104..83241,84758..85828,87229..87356, 91490..91628,97230..97394,100918..101079,102081..102358, 102573..102716,103808..103994,107343..107488, 110668..110760,110899..111113,116770..116853, 117850..118050,118645..118716,120003..120083, 123399..123664,123866..123972,124195..124325, 128147..128246,128758..132080)   | mRNA Sequence |    Download   Select all |
| Length | 9827   |
CDS Information
| Location | join(843..905,1006..1106,31036..31144,45039..45108, 47412..47470,55889..55972,57474..57614,64171..64343, 70323..70404,73589..73747,75408..75554,76130..76274, 80274..80458,83104..83241,84758..85828,87229..87356, 91490..91628,97230..97394,100918..101079,102081..102358, 102573..102716,103808..103994,107343..107488, 110668..110760,110899..111113,116770..116853, |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | CCDS58710.1 |    
Protein Information
| Protein ID | NP_001129069.1 |
|---|---|
| Protein Name | coiled-coil domain containing 88A |
| Molecular Wt. (Da) | 215824 |
| Protein Sequence |    Download   Select all |
| Length | 1870   |
| Uniprot ID | Q13753 |    
| Ensembl Protein ID | ENSP00000264144   |    
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| S | Phosphorylation | 1647 |
| S | Phosphorylation | 1674 |
| S | Phosphorylation | 1417 |
| S | Phosphorylation | 1387 |
| T | Phosphorylation | 1645 |
| S | Phosphorylation | 1650 |
| S | Phosphorylation | 1809 |
| S | Phosphorylation | 1689 |
| Y | Phosphorylation | 1737 |
| S | Phosphorylation | 1278 |
| K | Acetylation | 739 |
| T | Phosphorylation | 1773 |
| T | Phosphorylation | 1791 |
| S | Phosphorylation | 1792 |
| T | Phosphorylation | 1419 |
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING)      View   
No matching records from HPRD source could be found.
Pathway Information
No matching records could be found.
Structure Information
No matching records could be found.
Domain Information
| ID | Location | Description |
|---|---|---|
| TIGR00219 | 825-943  | mreC |
| cl19252 | 825-943  | MreC superfamily |
| pfam12718 | 719-843  | Tropomyosin_1 |
| cl22857 | 719-843  | Tropomyosin_1 superfamily |
| COG1382 | 766-859  | GimC |
| cl09111 | 766-859  | Prefoldin superfamily |
| pfam06156 | 1061-1107  | DUF972 |
| cl22921 | 1061-1107  | DUF972 superfamily |
| pfam06156 | 766-836  | DUF972 |
| cl22921 | 766-836  | DUF972 superfamily |
| PRK13922 | 784-820  | PRK13922 |
| cl19252 | 784-820  | MreC superfamily |
| TIGR02894 | 770-849  | DNA_bind_RsfA |
| cl21524 | 770-849  | PRK13923 superfamily |
| PRK13922 | 810-851  | PRK13922 |
| COG1792 | 784-823  | MreC |
| pfam01920 | 766-854  | Prefoldin_2 |
| PRK13922 | 632-688  | PRK13922 |
| cl19252 | 632-688  | MreC superfamily |
| pfam13476 | 729-849  | AAA_23 |
| cl21455 | 729-849  | P-loop_NTPase superfamily |
| pfam05622 | 18-668  | HOOK |
| TIGR04523 | 493-1205  | Mplasa_alph_rch |
| COG1196 | 491-1331  | Smc |
| COG1196 | 342-1164  | Smc |
| COG1196 | 582-1379  | Smc |
| TIGR02168 | 596-1375  | SMC_prok_B |
| TIGR02168 | 462-1300  | SMC_prok_B |
| COG1196 | 252-1086  | Smc |
| COG1196 | 247-985  | Smc |
| COG1196 | 463-1265  | Smc |
| COG1196 | 240-934  | Smc |
| COG1196 | 258-1013  | Smc |
| TIGR02168 | 258-1079  | SMC_prok_B |
| TIGR02169 | 476-1270  | SMC_prok_A |
| TIGR02168 | 249-1080  | SMC_prok_B |
| PRK03918 | 571-1073  | PRK03918 |
| PRK03918 | 610-1224  | PRK03918 |
| TIGR02168 | 705-1378  | SMC_prok_B |
| COG1196 | 711-1381  | Smc |
| PRK03918 | 253-890  | PRK03918 |
| PRK03918 | 181-814  | PRK03918 |
| TIGR02169 | 252-904  | SMC_prok_A |
| TIGR02169 | 594-1375  | SMC_prok_A |
| pfam02463 | 497-1286  | SMC_N |
| TIGR02168 | 645-1373  | SMC_prok_B |
| TIGR02169 | 252-1075  | SMC_prok_A |
| COG1196 | 244-837  | Smc |
| TIGR04523 | 465-895  | Mplasa_alph_rch |
| COG0419 | 114-850  | SbcC |
| COG0419 | 735-1300  | SbcC |
| TIGR02169 | 309-1185  | SMC_prok_A |
| COG0419 | 628-1265  | SbcC |
| PRK03918 | 325-935  | PRK03918 |
| TIGR02168 | 448-1220  | SMC_prok_B |
| COG0419 | 376-1008  | SbcC |
| COG0419 | 461-1108  | SbcC |
| PRK03918 | 730-1321  | PRK03918 |
| TIGR04523 | 626-1351  | Mplasa_alph_rch |
| pfam02463 | 616-1383  | SMC_N |
| PRK02224 | 313-828  | PRK02224 |
| PTZ00121 | 339-1065  | PTZ00121 |
| TIGR00606 | 256-1097  | rad50 |
| pfam01576 | 460-1117  | Myosin_tail_1 |
| pfam01576 | 253-919  | Myosin_tail_1 |
| pfam02463 | 279-1097  | SMC_N |
| TIGR02168 | 477-829  | SMC_prok_B |
| TIGR04523 | 257-836  | Mplasa_alph_rch |
| TIGR02169 | 656-1377  | SMC_prok_A |
| pfam02463 | 166-928  | SMC_N |
| pfam05557 | 588-1135  | MAD |
| TIGR02168 | 369-751  | SMC_prok_B |
| PRK02224 | 244-713  | PRK02224 |
| pfam05557 | 359-858  | MAD |
| TIGR01612 | 257-1377  | 235kDa-fam |
| TIGR00606 | 252-1013  | rad50 |
| PRK02224 | 201-669  | PRK02224 |
| TIGR00618 | 136-847  | sbcc |
| pfam13514 | 658-1095  | AAA_27 |
| pfam05483 | 585-1241  | SCP-1 |
| COG1196 | 241-605  | Smc |
| PRK01156 | 419-1053  | PRK01156 |
| pfam01576 | 250-1110  | Myosin_tail_1 |
| TIGR02168 | 241-559  | SMC_prok_B |
| pfam05483 | 434-1045  | SCP-1 |
| pfam12128 | 247-827  | DUF3584 |
| COG5022 | 580-1245  | COG5022 |
| TIGR02169 | 729-1151  | SMC_prok_A |
| PTZ00121 | 203-872  | PTZ00121 |
| pfam05622 | 504-858  | HOOK |
| PRK02224 | 688-1219  | PRK02224 |
| TIGR01612 | 252-1348  | 235kDa-fam |
| COG4942 | 661-846  | EnvC |
| pfam12128 | 477-1085  | DUF3584 |
| pfam05557 | 264-843  | MAD |
| TIGR02168 | 268-675  | SMC_prok_B |
| pfam09730 | 791-1225  | BicD |
| pfam12128 | 575-1217  | DUF3584 |
| pfam09730 | 585-1152  | BicD |
| TIGR02169 | 339-710  | SMC_prok_A |
| TIGR00606 | 495-1418  | rad50 |
| pfam10174 | 249-737  | Cast |
| COG4717 | 253-853  | YhaN |
| TIGR04211 | 752-848  | SH3_and_anchor |
| PRK01156 | 725-1317  | PRK01156 |
| PRK11281 | 796-1158  | PRK11281 |
| COG4372 | 591-845  | COG4372 |
| PHA02562 | 575-831  | 46 |
| TIGR02169 | 249-570  | SMC_prok_A |
| TIGR02168 | 839-1220  | SMC_prok_B |
| COG0419 | 953-1377  | SbcC |
| pfam05557 | 778-1324  | MAD |
| pfam05622 | 680-1087  | HOOK |
| TIGR04211 | 1035-1125  | SH3_and_anchor |
| COG5022 | 261-878  | COG5022 |
| COG4372 | 672-873  | COG4372 |
| pfam10174 | 241-865  | Cast |
| PRK11281 | 573-861  | PRK11281 |
| pfam13166 | 249-685  | AAA_13 |
| TIGR04211 | 1063-1150  | SH3_and_anchor |
| pfam09730 | 637-1230  | BicD |
| PRK01156 | 287-888  | PRK01156 |
| TIGR00618 | 621-1377  | sbcc |
| pfam04111 | 779-928  | APG6 |
| TIGR00618 | 183-677  | sbcc |
| TIGR04211 | 688-801  | SH3_and_anchor |
| pfam13166 | 762-1095  | AAA_13 |
| TIGR02169 | 824-1214  | SMC_prok_A |
| TIGR02169 | 958-1265  | SMC_prok_A |
| PTZ00108 | 550-903  | PTZ00108 |
| PRK12704 | 577-695  | PRK12704 |
| COG4477 | 537-952  | EzrA |
| COG2433 | 629-910  | COG2433 |
| COG1196 | 184-421  | Smc |
| TIGR04211 | 625-714  | SH3_and_anchor |
| COG4942 | 818-1096  | EnvC |
| COG4372 | 992-1229  | COG4372 |
| PRK05771 | 762-1014  | PRK05771 |
| pfam13166 | 468-804  | AAA_13 |
| PRK01156 | 253-714  | PRK01156 |
| pfam05911 | 490-1080  | DUF869 |
| pfam01496 | 561-834  | V_ATPase_I |
| COG4372 | 965-1147  | COG4372 |
| PTZ00440 | 494-1301  | PTZ00440 |
| TIGR00618 | 340-1031  | sbcc |
| PLN02939 | 241-622  | PLN02939 |
| pfam01496 | 598-844  | V_ATPase_I |
| COG4372 | 423-646  | COG4372 |
| COG2433 | 613-760  | COG2433 |
| pfam01576 | 252-827  | Myosin_tail_1 |
| COG5185 | 491-878  | HEC1 |
| TIGR00618 | 939-1380  | sbcc |
| COG4942 | 918-1147  | EnvC |
| pfam04111 | 715-873  | APG6 |
| PRK03918 | 882-1374  | PRK03918 |
| PRK12704 | 554-695  | PRK12704 |
| TIGR04211 | 716-826  | SH3_and_anchor |
| PRK04778 | 583-844  | PRK04778 |
| pfam06160 | 586-844  | EzrA |
| pfam05483 | 820-1382  | SCP-1 |
| TIGR04211 | 742-840  | SH3_and_anchor |
| TIGR03007 | 525-858  | pepcterm_ChnLen |
| TIGR03319 | 724-915  | RNase_Y |
| TIGR04211 | 766-873  | SH3_and_anchor |
| pfam12252 | 538-940  | SidE |
| PLN02939 | 716-1070  | PLN02939 |
| pfam13166 | 792-1103  | AAA_13 |
| TIGR04211 | 571-674  | SH3_and_anchor |
| pfam07888 | 626-1041  | CALCOCO1 |
| PRK05771 | 729-926  | PRK05771 |
| pfam14662 | 752-942  | CCDC155 |
| COG4717 | 360-981  | YhaN |
| pfam07888 | 768-1100  | CALCOCO1 |
| TIGR04211 | 786-893  | SH3_and_anchor |
| pfam04111 | 988-1108  | APG6 |
| pfam05557 | 261-676  | MAD |
| COG3206 | 805-1022  | GumC |
| COG1196 | 1042-1382  | Smc |
| pfam13514 | 252-879  | AAA_27 |
| TIGR02231 | 625-762  | TIGR02231 |
| pfam07888 | 361-742  | CALCOCO1 |
| pfam04111 | 628-745  | APG6 |
| pfam04111 | 543-678  | APG6 |
| pfam13514 | 775-1376  | AAA_27 |
| pfam13166 | 624-1002  | AAA_13 |
| pfam14662 | 684-854  | CCDC155 |
| pfam10174 | 255-1018  | Cast |
| COG4372 | 353-585  | COG4372 |
| PRK04863 | 526-852  | mukB |
| pfam04111 | 658-804  | APG6 |
| pfam06160 | 972-1383  | EzrA |
| COG3096 | 496-852  | MukB |
| COG1269 | 628-923  | NtpI |
| pfam13514 | 252-1131  | AAA_27 |
| TIGR04211 | 974-1083  | SH3_and_anchor |
| COG1269 | 400-645  | NtpI |
| COG4942 | 343-606  | EnvC |
| PRK00448 | 638-940  | polC |
| COG4717 | 589-1220  | YhaN |
| PRK12704 | 706-896  | PRK12704 |
| pfam10174 | 579-1297  | Cast |
| TIGR03319 | 578-694  | RNase_Y |
| COG4372 | 893-1132  | COG4372 |
| TIGR03185 | 761-1013  | DNA_S_dndD |
| TIGR04211 | 656-747  | SH3_and_anchor |
| pfam08614 | 659-841  | ATG16 |
| pfam13851 | 736-911  | GAS |
| pfam13870 | 758-847  | DUF4201 |
| pfam05911 | 554-891  | DUF869 |
| PRK04863 | 240-668  | mukB |
| PHA02562 | 343-572  | 46 |
| pfam09726 | 464-649  | Macoilin |
| TIGR03185 | 345-664  | DNA_S_dndD |
| TIGR03752 | 1056-1142  | conj_TIGR03752 |
| PHA02562 | 652-895  | 46 |
| pfam09726 | 592-849  | Macoilin |
| PRK03992 | 656-714  | PRK03992 |
| PRK10929 | 960-1170  | PRK10929 |
| COG2433 | 535-673  | COG2433 |
| pfam10174 | 387-1110  | Cast |
| pfam04156 | 766-873  | IncA |
| PRK04778 | 975-1383  | PRK04778 |
| COG2433 | 578-709  | COG2433 |
| pfam12128 | 133-621  | DUF3584 |
| COG4942 | 244-408  | EnvC |
| PLN02939 | 495-809  | PLN02939 |
| PRK12705 | 566-742  | PRK12705 |
| PRK03992 | 792-843  | PRK03992 |
| TIGR03346 | 840-1014  | chaperone_ClpB |
| COG3096 | 625-1368  | MukB |
| TIGR04523 | 252-686  | Mplasa_alph_rch |
| PRK05771 | 434-690  | PRK05771 |
| TIGR04211 | 263-377  | SH3_and_anchor |
| COG4717 | 257-623  | YhaN |
| pfam00529 | 950-1121  | HlyD |
| pfam14662 | 658-844  | CCDC155 |
| TIGR00606 | 255-741  | rad50 |
| pfam05701 | 620-1006  | WEMBL |
| TIGR03752 | 770-861  | conj_TIGR03752 |
| PRK05771 | 507-769  | PRK05771 |
| COG2433 | 299-408  | COG2433 |
| TIGR04211 | 256-362  | SH3_and_anchor |
| PRK00578 | 726-835  | prfB |
| pfam01576 | 1061-1327  | Myosin_tail_1 |
| pfam14662 | 1008-1146  | CCDC155 |
| PLN02939 | 619-938  | PLN02939 |
| PRK12704 | 495-605  | PRK12704 |
| pfam00521 | 523-685  | DNA_topoisoIV |
| pfam06785 | 706-873  | UPF0242 |
| COG0497 | 636-853  | RecN |
| PLN03229 | 257-605  | PLN03229 |
| PRK04863 | 535-846  | mukB |
| smart00435 | 770-855  | TOPEUc |
| pfam06785 | 642-846  | UPF0242 |
| pfam09726 | 600-836  | Macoilin |
| TIGR02169 | 244-411  | SMC_prok_A |
| PLN03229 | 652-1028  | PLN03229 |
| pfam05483 | 244-753  | SCP-1 |
| PTZ00341 | 375-1040  | PTZ00341 |
| TIGR04211 | 809-927  | SH3_and_anchor |
| COG4717 | 191-750  | YhaN |
| pfam13514 | 241-985  | AAA_27 |
| pfam04156 | 240-351  | IncA |
| PRK03992 | 625-683  | PRK03992 |
| pfam04111 | 189-301  | APG6 |
| pfam10174 | 723-1313  | Cast |
| COG3264 | 960-1180  | MscK |
| pfam10211 | 777-841  | Ax_dynein_light |
| PRK11281 | 675-894  | PRK11281 |
| pfam15070 | 531-827  | GOLGA2L5 |
| pfam09731 | 798-1073  | Mitofilin |
| COG4942 | 766-1029  | EnvC |
| PRK12704 | 608-732  | PRK12704 |
| TIGR03319 | 554-695  | RNase_Y |
| TIGR02168 | 184-340  | SMC_prok_B |
| pfam09789 | 794-1009  | DUF2353 |
| TIGR03185 | 798-1110  | DNA_S_dndD |
| PRK00409 | 697-892  | PRK00409 |
| TIGR04211 | 1085-1170  | SH3_and_anchor |
| COG3096 | 535-844  | MukB |
| COG4942 | 1028-1225  | EnvC |
| pfam09730 | 253-666  | BicD |
| COG3264 | 1242-1367  | MscK |
| COG4942 | 469-674  | EnvC |
| TIGR04211 | 247-354  | SH3_and_anchor |
| pfam09730 | 404-845  | BicD |
| pfam09728 | 728-1089  | Taxilin |
| COG0419 | 1109-1380  | SbcC |
| PTZ00419 | 628-832  | PTZ00419 |
| pfam15070 | 386-723  | GOLGA2L5 |
| COG4942 | 744-942  | EnvC |
| COG1193 | 728-944  | MutS2 |
| TIGR01843 | 761-899  | type_I_hlyD |
| pfam05667 | 766-1019  | DUF812 |
| TIGR03319 | 608-742  | RNase_Y |
| TIGR03752 | 453-532  | conj_TIGR03752 |
| COG3883 | 763-986  | CwlO1 |
| pfam01496 | 724-1015  | V_ATPase_I |
| TIGR03346 | 779-914  | chaperone_ClpB |
| TIGR03752 | 706-808  | conj_TIGR03752 |
| TIGR00763 | 657-821  | lon |
| pfam07888 | 821-1149  | CALCOCO1 |
| COG4913 | 516-1074  | COG4913 |
| PRK03992 | 808-869  | PRK03992 |
| COG2433 | 244-368  | COG2433 |
| pfam08432 | 775-892  | Vfa1 |
| PTZ00440 | 339-1168  | PTZ00440 |
| PRK00409 | 489-625  | PRK00409 |
| COG4372 | 763-1006  | COG4372 |
| pfam14992 | 692-834  | TMCO5 |
| PRK09039 | 449-587  | PRK09039 |
| PRK12704 | 882-1014  | PRK12704 |
| smart00787 | 1209-1337  | Spc7 |
| TIGR02680 | 972-1095  | TIGR02680 |
| TIGR04211 | 598-703  | SH3_and_anchor |
| pfam12004 | 773-867  | DUF3498 |
| TIGR04211 | 1089-1185  | SH3_and_anchor |
| TIGR02168 | 1248-1380  | SMC_prok_B |
Ontology Information
| HPRD ID | 1038 |    
|---|---|
| Molecular Class | Cytoskeletal protein |
| Molecular Function | Cell adhesion molecule activity (GO:0005194) |
| Biological Process | Cell communication (GO:0007154); Signal transduction (GO:0007165); Cell adhesion (GO:0007155)   |
Drug Information
No matching records could be found.
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    
