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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
APOM 55937 apolipoprotein M  6ApoM, G3a, NG20 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
22941695   2012Cell line : -

Source : -

Sample Type : CRC tumor

No. of Sample : 23 colorectal biopsy samples (7 normal mucosa, 6 inflammatory mucosa and 10 polyp tissues) and 20 cases of colorectal cancer tissues as well as the adjacent normal tissues.

Stage : -

Immunohistochemistry,Real-time PCRDown-regulation-Both apoM mRNA and protein expression levels in colorectal cancer tissues are significantly decreased in contrast to normal and benign colorectal tissues.


Gene Details



NC_000006.11 (31620187..31625987)

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Gene Type protein coding
Gene Family Apolipoproteins, "Lipocalins"
Description The protein encoded by this gene is an apolipoprotein and member of the lipocalin protein family. It is found associated with high density lipoproteins and to a lesser extent with low density lipoproteins and triglyceride-rich lipoproteins. The encoded protein is secreted through the plasma membrane but remains membrane-bound, where it is involved in lipid transport. Alternate splicing results in both coding and non-coding variants of this gene. [provided by RefSeq, Jan 2012]  
Chromosome 6
Location 6p21
Start 31620187  
End 31625987  
Strand +  
Gene Sequence

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Length 5801  
OMIM ID 606907   
HGNC ID HGNC:13916   
Unigene ID Hs.534468   
Ensembl ID ENSG00000204444   
PharmGKB ID PA38370   

mRNA Information


mRNA ID ?NM_001256169.1
Exon  
mRNA Sequence

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Length  



CDS Information


   
Location
CDS Sequence

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CCDS ID CCDS4710.1



Protein Information


      
Protein IDNP_001243098.1
Protein Nameapolipoprotein M
Molecular Wt. (Da)0
Protein Sequence

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Length 188  
Uniprot IDQ9BYT3
Ensembl Protein ID ENSP00000320754  



Post-translational Modification Information (Source : HPRD)


Residue Type site
CDisulfide Bridge128;157
NGlycosylation135
CDisulfide Bridge23;167
CDisulfide Bridge95;183

Enzyme Information


No matching records could be found.

PPi Information


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No matching records from HPRD source could be found.

Pathway Information


No matching records could be found.

Structure Information


No matching records could be found.

Domain Information




ID Location Description
pfam110321-187  ApoM
cl215281-187  Lipocalin superfamily


Ontology Information


   
HPRD ID15689
Molecular ClassTransport/cargo protein
Molecular FunctionTranscription regulator activity (GO:0030528)
Biological ProcessRegulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism (GO:0019219)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO