Search results:


General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
BARD1 580 BRCA1 associated RING domain 1  2- 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
21693656   2011Cell line : -

Source : Biochain (Hayward, CA).

Sample Type : CRC tumor and normal tissue

No. of Sample : 15 CRC, 15 normal tissue

Stage : -

real time RT-PCR,Sequence analysis,ImmunohistochemistryPolymorhpism- BARD1 regulation is an important pathway in colon cancer and that the BARD1 full-length protein may be a useful marker to improve risk stratification in colon cancer patients.

22814582   2012Cell line : -

Source : German patient

Sample Type : -

No. of Sample : 168 CRC

Stage : TNM Stage I-IV

Immunohistochemistry, real time RT-PCRPolymorhpism- BARD1 isoforms, but not FL BARD1, are expressed in colon cancer and affect its progression and clinical .

25058500   2015Cell line : -

Source : Hospital Cl?nico San Carlos in Madrid, Hospital Clinic in Barcelona, and Hospital Donostia in San Sebastin.

Sample Type : CRC tumor

No. of Sample : 43 CRC

Stage : -

Exome sequencingPolymorhpism--


Gene Details



NC_000002.11 (215590370..215674428, complement)

View Larger Image
   
Gene Type protein coding
Gene Family Ankyrin repeat domain containing
Description This gene encodes a protein which interacts with the N-terminal region of BRCA1. In addition to its ability to bind BRCA1 in vivo and in vitro, it shares homology with the 2 most conserved regions of BRCA1: the N-terminal RING motif and the C-terminal BRCT domain. The RING motif is a cysteine-rich sequence found in a variety of proteins that regulate cell growth, including the products of tumor suppressor genes and dominant protooncogenes. This protein also contains 3 tandem ankyrin repeats. The BARD1/BRCA1 interaction is disrupted by tumorigenic amino acid substitutions in BRCA1, implying that the formation of a stable complex between these proteins may be an essential aspect of BRCA1 tumor suppression. This protein may be the target of oncogenic mutations in breast or ovarian cancer. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2013]  
Chromosome 2
Location 2q34-q35
Start 215590370  
End 215674428  
Strand -  
Gene Sequence

   Download   Select all

Length 84059  
OMIM ID 601593   
HGNC ID HGNC:952   
Unigene ID Hs.591642   
Ensembl ID ENSG00000138376   
PharmGKB ID PA25256   

mRNA Information


mRNA ID NM_001282548.1
Exon join(1..300,57157..57265,63858..63990,64553..64645, 79204..79301,80704..84066)  
mRNA Sequence

   Download   Select all

Length 4113  



CDS Information


   
Location143..1066
CDS Sequence

   Download   Select all

CCDS ID CCDS2397.1



Protein Information


      
Protein IDNP_001269477.1
Protein NameBRCA1 associated RING domain 1
Molecular Wt. (Da)34927
Protein Sequence

   Download   Select all

Length 307  
Uniprot IDP08253
Ensembl Protein ID ENSP00000219070  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation148
SPhosphorylation184
SPhosphorylation186
SPhosphorylation391
TPhosphorylation394
TPhosphorylation299
SPhosphorylation251
SPhosphorylation364
SPhosphorylation330

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                                                                                    
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
602BCL3179NP_005169.2in vitro;in vivo;yeast 2-hybrid10362352   
672BRCA1218NP_009231.2in vitro;in vivo;yeast 2-hybrid89   440   231   002   618   400   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   
1477CSTF12653NP_001315.1in vitro;in vivo;yeast 2-hybrid1   047   752   311   257   220   
2130EWSR1592NP_053733.2in vitro;in vivo12183411   
2547XRCC61071NP_001460.1in vivo15782130   
4436MSH2389NP_000242.1in vitro11498787   
5451POU2F11250NP_002688.2in vivo11777930   
5764PTN1199NP_002816.1yeast 2-hybrid15383276   
7157TP531859NP_000537.3in vivo15782130   
9001HAP12972NP_003940.3in vitro;yeast 2-hybrid15383276   
9656MDC116252NP_055456.2in vivo12611903   
29117BRD712531AAF19526.1yeast 2-hybrid15383276   


Pathway Information


No matching records could be found.

Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd00204424-544  ANK
cl02529424-544  ANK superfamily
cd00027568-641  BRCT
cl00038568-641  BRCT superfamily
cd0016250-89  RING
cl1723850-89  RING superfamily
cd00027674-767  BRCT
cl00038674-767  BRCT superfamily
pfam1483541-105  zf-RING_6
cd00204455-543  ANK
cd00204423-481  ANK
smart00292571-640  BRCT
pfam00023495-524  Ank
pfam00023461-488  Ank
pfam1463449-86  zf-RING_5
pfam00023428-459  Ank
smart00248461-488  ANK
smart00248493-522  ANK
pfam00533575-640  BRCT
smart00292669-767  BRCT
pfam13606461-489  Ank_3
pfam1392350-86  zf-C3HC4_2
smart0018450-86  RING
pfam0009750-86  zf-C3HC4
pfam13606428-456  Ank_3
pfam13606494-522  Ank_3
smart00248427-456  ANK
pfam12796432-524  Ank_2
COG0666407-557  ANKYR
pfam12796416-490  Ank_2
pfam12796465-527  Ank_2
PHA03100408-524  PHA03100
PHA02874424-517  PHA02874
pfam13637461-514  Ank_4
pfam13637430-481  Ank_4
PTZ00322431-516  PTZ00322
PHA02878422-545  PHA02878
COG0666424-509  ANKYR
PHA03095404-532  PHA03095
PHA02878436-534  PHA02878
PHA03100430-535  PHA03100
PHA03100423-533  PHA03100
PHA02878432-531  PHA02878
PHA02875427-530  PHA02875
PHA02874412-543  PHA02874
PHA02876410-524  PHA02876
pfam13857479-533  Ank_5
PHA02875430-523  PHA02875
PHA02874424-532  PHA02874
pfam13857416-468  Ank_5
PHA02875440-518  PHA02875
PHA02875429-543  PHA02875
PTZ00322424-483  PTZ00322
PHA03095441-533  PHA03095
PLN03192431-521  PLN03192
PHA03100443-542  PHA03100
PHA02876429-544  PHA02876
PHA02874432-533  PHA02874
PHA02874439-543  PHA02874
pfam13857447-499  Ank_5
PLN03192427-582  PLN03192
pfam12796416-458  Ank_2
PHA02876424-531  PHA02876
TIGR0059939-117  rad18
PHA03095428-546  PHA03095
pfam13637494-533  Ank_4
PHA02875435-523  PHA02875
PHA02946437-540  PHA02946
COG543240-213  RAD18
PHA02878432-597  PHA02878
PHA02878424-515  PHA02878
PHA03095424-481  PHA03095
PHA02716440-531  PHA02716
pfam05110185-367  AF-4
PHA03095474-533  PHA03095
PLN03192426-495  PLN03192
TIGR00870414-522  trp
PHA02917425-484  PHA02917
PHA03095424-515  PHA03095


Ontology Information


   
HPRD ID1703
Molecular ClassTranscription regulatory protein
Molecular FunctionMetallopeptidase activity (GO:0008237)
Biological ProcessProtein metabolism (GO:0019538)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO