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General Information
| Gene_Symbol | Gene_ID | Gene_Name | Chromosome | Alias |
|---|---|---|---|---|
| CXCL16 | 58191 | chemokine (C-X-C motif) ligand 16 | 17 | SR-PSOX, CXCLG16, SRPSOX |
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 17510400 | 2007 | Cell line : - Source : Toyama University Hospital Sample Type : CRC tumor, normal tissue and blood plasma No. of Sample : 58 Stage : - | Reverse transcription-PCR,ELISA, Immunohistochemistry | Up-regulation | - | CXCL16 is a new prognostic biomarker and may be useful for the development of a more effective therapeutic strategy for CRC. CXCL16 expression was consistently up-regulated more in tumor tissues than in normal mucosa derived from the same CRC patients. |
Gene Details
| Gene Type | protein coding |
|---|---|
| Gene Family | Endogenous ligands |
| Description | - |
| Chromosome | 17 |
| Location | 17p13 |
| Start | 4733529 |
| End | 4739928 |
| Strand | - |
| Gene Sequence | Download Select all |
| Length | 6400 |
| OMIM ID | 605398 |
| HGNC ID | HGNC:16642 |
| Unigene ID | Hs.745037 |
| Ensembl ID | ENSG00000161921 |
| PharmGKB ID | - |
mRNA Information
| mRNA ID | NM_001305000.1 |
|---|---|
| Exon | complement(<6319..>6400) | mRNA Sequence | Download Select all |
| Length | 1466 |
CDS Information
| Location | join(533..668,1009..1147,1439..1521,4421..4837,5277..5323) |
|---|---|
| CDS Sequence | Download Select all |
| CCDS ID | CCDS11052.1 |
Protein Information
| Protein ID | NP_001094282.1 |
|---|---|
| Protein Name | chemokine (C-X-C motif) ligand 16 |
| Molecular Wt. (Da) | 24405 |
| Protein Sequence | Download Select all |
| Length | 273 |
| Uniprot ID | P48357 |
| Ensembl Protein ID | ENSP00000340884 |
Post-translational Modification Information (Source : HPRD)
No matching records could be found.
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING) View
| Interactant Gene ID (Source: HPRD) | Gene Symbol | HPRD ID | Ref Seq ID | Technique | References |
|---|---|---|---|---|---|
| 10663 | CXCR6 | 5520 | NP_006555.1 | in vitro;in vivo | 1 101 710 011 290 790 |
Pathway Information
| Pathway Name | Pathway ID |
|---|---|
| Chemokine signaling pathway | hsa04062 |
| Cytokine-cytokine receptor interaction | hsa04060 |
Structure Information
No matching records could be found.
Domain Information
No matching records could be found.
Ontology Information
| HPRD ID | 1090 |
|---|---|
| Molecular Class | Adhesion molecule |
| Molecular Function | Transcription regulator activity (GO:0030528) |
| Biological Process | Regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism (GO:0019219) |
Drug Information
No matching records could be found.