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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
RASA1 5921 RAS p21 protein activator (GTPase activating protein) 1  5GAP, CM-AVM, p120GAP, p120RASGAP 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
21150880   2011Cell line : -

Source : Leiden University Medical Center (Leiden, The Netherlands) or at the Rijnland Hospital (Leiderdorp, The Netherlands)

Sample Type : -

No. of Sample : -

Stage : -

Real-time RT-PCR, CTCF Chromatin immunoprecepetation and real time RT- PCRMethylation-The high sensitivity and specificity for the PTPRG intron 1 methylation in both sporadic and hereditary colon cancers support biomarker potential for early detection of colon cancer.


Gene Details



Chromosome 5 - NC_000005.10 (87267801..87391926)

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Gene Type protein coding
Gene Family Pleckstrin homology (PH) domain containing, "SH2 domain containing"
Description The protein encoded by this gene is located in the cytoplasm and is part of the GAP1 family of GTPase-activating proteins. The gene product stimulates the GTPase activity of normal RAS p21 but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Mutations also have been associated with hereditary capillary malformations (CM) with or without arteriovenous malformations (AVM) and Parkes Weber syndrome. Alternative splicing results in two isoforms where the shorter isoform, lacking the N-terminal hydrophobic region but retaining the same activity, appears to be abundantly expressed in placental but not adult tissues.  
Chromosome 5
Location 5q13
Start 87267801  
End 87391926  
Strand +  
Gene Sequence

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Length 124126  
OMIM ID 139150   
HGNC ID HGNC:9871   
Unigene ID Hs.664080   
Ensembl ID ENSG00000145715   
PharmGKB ID -   

mRNA Information


mRNA ID XM_011543525.1
Exon join(1..1190,63548..63700,64707..64842,65467..65537, 70174..70291,73490..73521,78872..78924,81414..81564, 85357..85435,94751..94871,95548..95704,102013..102100, 104318..104395,106363..106520,107040..107116, 108593..108765,109081..109240,110596..110738, 111935..112050,115913..115980,117501..117589, 119026..119103,121593..121727,123000..124116)  
mRNA Sequence

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Length 4402  



CDS Information


   
Location join(652..1190,63548..63700,64707..64842,65467..65537, 70174..70291,73490..73521,78872..78924,81414..81564, 85357..85435,94751..94871,95548..95704,102013..102100, 104318..104395,106363..106520,107040..107116, 108593..108765,109081..109240,110596..110738, 111935..112050,112709..112795,115913..115980, 117501..117589,119026..119103,121593..121727, 12300
CDS Sequence

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CCDS ID CCDS34200.1



Protein Information


      
Protein IDNP_002881.1
Protein NameRAS p21 protein activator (GTPase activating protein) 1
Molecular Wt. (Da)116273
Protein Sequence

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Length 1047  
Uniprot IDP11142
Ensembl Protein ID ENSP00000227378  



Post-translational Modification Information (Source : HPRD)


Residue Type site
YPhosphorylation460
YPhosphorylation283
YPhosphorylation460
YPhosphorylation283
DProteolytic Cleavage157
DProteolytic Cleavage455
DProteolytic Cleavage278
DProteolytic Cleavage157
DProteolytic Cleavage455
DProteolytic Cleavage278
YPhosphorylation615;-
YPhosphorylation438;-
YPhosphorylation615;-
YPhosphorylation438;-
SPhosphorylation827
SPhosphorylation650

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                                                                     
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
309ANXA6231NP_001146.2in vitro;in vivo879   868   410   571   081   
858CAV23029NP_001224.1in vitro15504032   
1445CSK496NP_004374.1in vitro7544435   
1969EPHA21494NP_004422.2in vivo16051609   
2885GRB2150NP_002077.1in vivo12441060   
3329HSPD1318NP_002147.2in vivo1347942   
3815KIT1287NP_000213.1in vitro11071635   
4067LYN1301NP_002341.1in vitro8395016   
6464SHC12780NP_001123512.1in vitro;in vivo8155326   
6850SYK2514NP_003168.2in vitro9218456   
80176SPSB118106NP_079382.2in vitro;in vivo15713673   


Pathway Information


                  
Pathway Name Pathway ID
Axon guidance hsa04360
MAPK signaling pathway hsa04010
Ras signaling pathway hsa04014


Structure Information


PDB ID1WER
Resolution1.6
MethodX-RAY DIFFRACTION
Chains A  
Molecule P120GAP  
Model View



Domain Information




ID Location Description
cd05391714-1045  RasGAP_p120GAP
cl02569714-1045  RasGAP superfamily
cd08400591-716  C2_Ras_p21A1
cl14603591-716  C2 superfamily
cd10353161-264  SH2_Nterm_RasGAP
cl15255161-264  SH2 superfamily
cd10354350-426  SH2_Cterm_RasGAP
cl15255350-426  SH2 superfamily
cd13260489-576  PH_RASA1
cl17171489-576  PH-like superfamily
cd11788281-339  SH3_RasGAP
cl17036281-339  SH3 superfamily
cd04519721-976  RasGAP
cd08383595-712  C2A_RasGAP
cd05137709-972  RasGAP_CLA2_BUD2
cd05128738-974  RasGAP_GAP1_like
pfam00616769-942  RasGAP
cd05392718-1011  RasGAP_Neurofibromin_like
cd05136711-1035  RasGAP_DAB2IP
cd05135741-974  RasGAP_RASAL
cd05130732-987  RasGAP_Neurofibromin
cd05134721-965  RasGAP_RASA3
cd05395745-977  RasGAP_RASA4
cd05132750-1032  RasGAP_GAPA
pfam00017351-426  SH2
pfam00017181-256  SH2
cd05394721-942  RasGAP_RASA2
smart00252351-432  SH2
cd00173181-256  SH2
smart00252180-260  SH2
cd10354181-256  SH2_Cterm_RasGAP
cd09931181-257  SH2_C-SH2_SHP_like
cd00173351-426  SH2
cd09932346-442  SH2_C-SH2_PLC_gamma_like
cd09932181-279  SH2_C-SH2_PLC_gamma_like
cd10348180-256  SH2_Cterm_shark_like
cd09931351-442  SH2_C-SH2_SHP_like
cd09933181-257  SH2_Src_family
cd10347181-256  SH2_Nterm_shark_like
smart00233489-577  PH
cd09941179-260  SH2_Grb2_like
cd09941344-431  SH2_Grb2_like
cd10408179-268  SH2_Nck1
cd10343181-272  SH2_SHIP
cd05129723-1028  RasGAP_RAP6
cd05127837-980  RasGAP_IQGAP_like
cd10355181-266  SH2_DAPP1_BAM32_like
cd09943179-269  SH2_Nck_family
cd00030596-692  C2
cd10341178-260  SH2_N-SH2_PLC_gamma_like
cd09945349-426  SH2_SHB_SHD_SHE_SHF_like
cd10344174-260  SH2_SLAP
pfam00169489-576  PH
smart00239595-689  C2
cd09935181-263  SH2_ABL
cd10362178-260  SH2_Src_Lck
cd10409180-274  SH2_Nck2
cd09943351-431  SH2_Nck_family
cd09937351-445  SH2_csk_like
cd09938181-279  SH2_N-SH2_Zap70_Syk_like
cd00821489-572  PH
cd10341346-431  SH2_N-SH2_PLC_gamma_like
cd09925172-260  SH2_SHC
cd10408351-431  SH2_Nck1
cd10364178-256  SH2_Src_Lyn
cd10370181-257  SH2_Src_Src42
cd10340181-272  SH2_N-SH2_SHP_like
pfam00168596-667  C2
cd10392349-431  SH2_SHF
cd09933351-429  SH2_Src_family
cd09940180-258  SH2_Vav_family
cd09929178-272  SH2_BLNK_SLP-76
cd10390351-449  SH2_SHD
cd10392181-272  SH2_SHF
cd10352182-253  SH2_a2chimerin_b2chimerin
cd09934178-274  SH2_Tec_family
cd10343351-442  SH2_SHIP
cd10337181-256  SH2_BCAR3
cd09944178-256  SH2_Grb7_family
pfam00018285-331  SH3_1
cd10397180-273  SH2_Tec_Btk
cd11934282-339  SH3_Lasp1_C
cd10398178-272  SH2_Tec_Txk
cd09945181-272  SH2_SHB_SHD_SHE_SHF_like
cd10347351-426  SH2_Nterm_shark_like
cd10365180-257  SH2_Src_Src
cd10369181-260  SH2_Src_Frk
cd10360351-426  SH2_Srm
cd13316490-572  PH_Boi
cd10409349-441  SH2_Nck2
cd10340350-430  SH2_N-SH2_SHP_like
cd09935351-428  SH2_ABL
cd09925343-442  SH2_SHC
cd10418180-257  SH2_Src_Fyn_isoform_a_like
cd09937181-257  SH2_csk_like
cd04013595-719  C2_SynGAP_like
cd05131824-979  RasGAP_IQGAP2
cd10368180-257  SH2_Src_Fyn
cd11789283-337  SH3_Nebulin_family_C
cd10361344-431  SH2_Fps_family
smart00326280-331  SH3
cd10360181-256  SH2_Srm
cd10371180-257  SH2_Src_Blk
cd01252490-574  PH_GRP1-like
cd10400182-232  SH2_SAP1a
cd10573490-574  PH_DAPP1
cd09942351-433  SH2_nSH2_p85_like
cd10356180-253  SH2_ShkA_ShkC
cd05133824-982  RasGAP_IQGAP1
cd10367180-260  SH2_Src_Fgr
cd09926179-256  SH2_CRK_like
cd10370347-430  SH2_Src_Src42
cd10361179-256  SH2_Fps_family
cd08681596-693  C2_fungal_Inn1p-like
cd13276490-568  PH_AtPH1
cd10351351-440  SH2_SH2D4B
cd09944346-437  SH2_Grb7_family
cd10389349-431  SH2_SHB
cd01238490-576  PH_Btk
cd13281489-573  PH_PLEKHD1
cd10419180-257  SH2_Src_Fyn_isoform_b_like
cd10348351-426  SH2_Cterm_shark_like
cd09946351-431  SH2_HSH2_like
cd10363178-271  SH2_Src_HCK
cd10407178-260  SH2_Vav3
cd09929342-432  SH2_BLNK_SLP-76
cd10363347-428  SH2_Src_HCK
cd10351180-269  SH2_SH2D4B
cd10401181-258  SH2_C-SH2_Syk_like
cd09934351-427  SH2_Tec_family
cd10344351-426  SH2_SLAP
cd10414346-441  SH2_Grb14
cd10391351-431  SH2_SHE
cd10355351-426  SH2_DAPP1_BAM32_like
cd10415346-403  SH2_Grb10
cd10414178-256  SH2_Grb14
cd10399181-260  SH2_Tec_Bmx
cd10349181-256  SH2_SH2D2A_SH2D7
cd10350181-271  SH2_SH2D4A
cd10362347-429  SH2_Src_Lck
cd13250490-574  PH_ACAP
cd10364347-429  SH2_Src_Lyn
cd10413178-264  SH2_Grb7
cd10367351-426  SH2_Src_Fgr
cd00174283-331  SH3
cd10417176-271  SH2_SH2D7
cd10390181-272  SH2_SHD
cd13296490-572  PH2_MyoX
cd13288494-573  PH_Ses
cd10410343-431  SH2_SH2B1
cd09926344-421  SH2_CRK_like
cd10389181-272  SH2_SHB
cd01235490-574  PH_Sbf1_hMTMR5
cd01259490-572  PH_APBB1IP
cd10405181-260  SH2_Vav1
cd10396180-274  SH2_Tec_Itk
cd10366180-257  SH2_Src_Yes
cd10402171-277  SH2_C-SH2_Zap70
cd08401595-692  C2A_RasA2_RasA3
cd10346351-431  SH2_SH2B_family
cd10415178-256  SH2_Grb10
cd10412181-256  SH2_SH2B3
cd12207824-979  RasGAP_IQGAP3
cd10337351-426  SH2_BCAR3
cd10369347-428  SH2_Src_Frk
cd10412351-431  SH2_SH2B3
cd13282490-575  PH1_PLEKHH1_PLEKHH2
cd10365351-428  SH2_Src_Src
cd10346181-235  SH2_SH2B_family
cd11933282-339  SH3_Nebulin_C
cd10391181-272  SH2_SHE
cd10419348-429  SH2_Src_Fyn_isoform_b_like
cd10397344-427  SH2_Tec_Btk
cd09923181-264  SH2_SOCS_family
cd13375530-642  PH_SynGAP
cd10411351-431  SH2_SH2B2
cd10368347-426  SH2_Src_Fyn
cd09940347-441  SH2_Vav_family
cd10417351-431  SH2_SH2D7
cd10413346-421  SH2_Grb7
cd10366351-426  SH2_Src_Yes
cd09930181-260  SH2_cSH2_p85_like
cd11785283-337  SH3_SH3RF_C
cd13271490-586  PH2_TAPP1_2
cd10411181-256  SH2_SH2B2
cd09942181-276  SH2_nSH2_p85_like
cd10350351-431  SH2_SH2D4A
cd10418347-426  SH2_Src_Fyn_isoform_a_like
cd11935282-339  SH3_Nebulette_C
cd13258504-573  PH_PLEKHJ1
cd08386592-648  C2A_Synaptotagmin-7
cd13293489-573  PH_CpORP2-like
pfam14604286-322  SH3_9
cd13253490-574  PH1_ARAP
cd11845284-331  SH3_Src_like
cd13308489-570  PH_3BP2
cd10356351-423  SH2_ShkA_ShkC
cd10380174-256  SH2_Jak3
cd10349351-435  SH2_SH2D2A_SH2D7
cd09938351-429  SH2_N-SH2_Zap70_Syk_like
cd10402346-442  SH2_C-SH2_Zap70
cd11823283-324  SH3_Nostrin
cd10400352-388  SH2_SAP1a
cd13256462-572  PH3_ARAP
cd11783283-329  SH3_SH3RF_3
cd10352352-423  SH2_a2chimerin_b2chimerin
cd08678612-667  C2_C21orf25-like
cd13385490-585  PH_Gab3
cd13376530-642  PH_DAB2IP
cd04020583-650  C2B_SLP_1-2-3-4
cd10410180-220  SH2_SH2B1
cd08385592-689  C2A_Synaptotagmin-1-5-6-9-10
cd13278490-574  PH_Bud4
cd13324489-578  PH_Gab-like
cd13327490-572  PH_PLEKHM3_2
cd09946180-271  SH2_HSH2_like
cd10401351-426  SH2_C-SH2_Syk_like
cd08404605-689  C2B_Synaptotagmin-4
cd11790283-339  SH3_Amphiphysin
cd10358351-440  SH2_PTK6_Brk
cd01236489-575  PH_RIP
cd11926286-330  SH3_SH3RF1_3
cd10345181-270  SH2_C-SH2_Zap70_Syk_like
cd10388181-244  SH2_SOCS7
cd04050596-644  C2B_Synaptotagmin-like
cd10399351-427  SH2_Tec_Bmx
cd13326489-569  PH_CNK_insect-like
cd01264489-573  PH_MELT_VEPH1
cd00276600-689  C2B_Synaptotagmin
smart00323698-1044  RasGAP
COG5261634-980  IQG1
COG5038614-709  COG5038


Ontology Information


   
HPRD ID777
Molecular ClassGTPase activating protein
Molecular FunctionChaperone activity (GO:0003754)
Biological ProcessProtein metabolism (GO:0019538)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO