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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
SLC12A2 6558 Solute carrier family 12 (sodium/potassium/chloride transporters), member 2  5BSC; BSC2; NKCC1 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
20089989   2010Cell line : -

Source : VU University Medical Center, Amsterdam, The Netherlands.

Sample Type : CRC tumor and normal tissue, Blood sample

No. of Sample : -

Stage : -

Biochemical isolation to nano-LC-MS/MS analysisUnknown--


Gene Details



Chromosome: 5; NC_000005.9 (127419483..127525380)

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Gene Type protein coding
Gene Family Solute carriers
Description The protein encoded by this gene mediates sodium and chloride transport and reabsorption. The encoded protein is a membrane protein and is important in maintaining proper ionic balance and cell volume. This protein is phosphorylated in response to DNA damage. Three transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Jan 2012]  
Chromosome 5
Location 5q23.3
Start 128083791  
End 128189688  
Strand +  
Gene Sequence

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Length 105898  
OMIM ID 600840   
HGNC ID HGNC:10911   
Unigene ID Hs.162585   
Ensembl ID ENSG00000064651   
PharmGKB ID PA35806   

mRNA Information


mRNA ID NM_001046.2
Exon join(1..920,29024..29143,30422..30497,30796..30891, 47277..47416,50375..50485,51910..52018,54807..54934, 55034..55118,58040..58191,63832..63939,64964..65087, 66207..66308,67451..67606,68916..69015,74263..74374, 77870..78010,83971..84077,87877..87956,90751..90876, 93315..93362,94777..94899,97093..97204,99065..99151, 100576..100711,100999..101066,102706..105898)  
mRNA Sequence

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Length 6891  



CDS Information


   
Locationjoin(165..920,29024..29143,30422..30497,30796..30891, 47277..47416,50375..50485,51910..52018,54807..54934, 55034..55118,58040..58191,63832..63939,64964..65087, 66207..66308,67451..67606,68916..69015,74263..74374, 77870..78010,83971..84077,87877..87956,90751..90876, 93315..93362,94777..94899,97093..97204,99065..99151, 100576..100711,100999..101066,102706..102841)
CDS Sequence

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CCDS ID CCDS4144.1



Protein Information


      
Protein IDNP_001037.1
Protein NameSolute carrier family 12 (sodium/potassium/chloride transporters), member 2
Molecular Wt. (Da)131317
Protein Sequence

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Length 1212  
Uniprot IDQ02318
Ensembl Protein ID ENSP00000258415  



Post-translational Modification Information (Source : HPRD)


Residue Type site
TPhosphorylation203
TPhosphorylation207
TPhosphorylation212
SPhosphorylation940;-
SPhosphorylation77
SPhosphorylation79
SPhosphorylation994

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

No matching records from HPRD source could be found.

Pathway Information


                  
Pathway Name Pathway ID
Pancreatic secretion hsa04972
Salivary secretion hsa04970
Vibrio cholerae infection hsa05110


Structure Information


No matching records could be found.

Domain Information




ID Location Description
pfam08403201-267  AA_permease_N
cl07139201-267  AA_permease_N superfamily
TIGR00930216-1212  2a30
pfam00324290-793  AA_permease
COG0531315-754  PotE
pfam13520316-745  AA_permease_2
TIGR00909299-751  2A0306
COG0833487-752  LysP
TIGR00913487-753  2A0310
COG1113487-760  AnsP


Ontology Information


   
HPRD ID500
Molecular ClassMembrane transport protein
Molecular FunctionComplement activity (GO:0003811)
Biological ProcessImmune response (GO:0006955)  



SNP Information


View SNP Geneview Report   

Drug Information


Uniprot ID DrugBank ID Name Type
P55011DB00761Potassium ChlorideSmallMoleculeDrug
P55011DB00887BumetanideSmallMoleculeDrug
P55011DB01325QuinethazoneSmallMoleculeDrug
P55011DB00761Potassium ChlorideSmallMoleculeDrug

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO