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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
TP53 7157 tumor protein p53  17p53, LFS1 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
26362504   2015Cell line : -

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : 50 colorectal cancer patients

Stage : -

RT-PCR,RNA interference,Transwell invasion assay,Immunohistochemistry ,Western blotting Mutation- In colorectal adenocarcinomas, p53 mutation correlated with high NF-?B, Fascin and low E-cadherin expression.

25945089   2015Cell line : -

Source : Adnan Menderes University Hospital, Aydin, Turkey

Sample Type : CRC Tumor and adjescent tissue

No. of Sample : 457

Stage : Duke Stage A-C

ImmunohistochemistryUp-regulation-NF-?B, p53, and Ki-67 expressions were significantly higher in the metastatic lymph nodes compared to the primary tumor tissues .

25973304   2015Cell line : RKO, HT 29, DLD1, LOVO, HCT116, SW480, SW620

Source : Chinese PLA General Hospital.

Sample Type : CRC Tumor

No. of Sample : 102

Stage : TNM Stage I-IV

real time RT-PCR, methylation specific PCR, Flow cytometry and western blottingUp-regulation-BCL6B suppresses colorectal cancer growth by activating P53 signaling.

9539318   1998Cell line : HCT116

Source : -

Sample Type : -

No. of Sample : -

Stage : Duke Stage B,C,D.

ELISAUp-regulation-Mutant p53 protein might be used as a potential biomarker in the management of patients with colorectal cancer.

Serum levels of the mutant p53 protein in patients with colorectal cancer (mean=0.97+/-0.14 ng/ml, ranged from 0.7 ng/ml to 1.37 ng/ml, n=50) were significantly greater than those in patients with adenomatous polyp (mean=0.73+/-0.06 ng/ml, ranged from 0.69 ng/ml to 0.83 ng/ml) (p<0.001).


Gene Details



Chromosome 17 - NC_000017.11 (7668402..7687550, complement)

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Gene Type protein coding
Gene Family
Description This gene encodes a tumor suppressor protein containing transcriptional activation, DNA binding, and oligomerization domains. The encoded protein responds to diverse cellular stresses to regulate expression of target genes, thereby inducing cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. Mutations in this gene are associated with a variety of human cancers, including hereditary cancers such as Li-Fraumeni syndrome. Alternative splicing of this gene and the use of alternate promoters result in multiple transcript variants and isoforms. Additional isoforms have also been shown to result from the use of alternate translation initiation codons (PMIDs: 12032546, 20937277).  
Chromosome 17
Location 17p13.1
Start 7668402  
End 7687550  
Strand -  
Gene Sequence

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Length 19149  
OMIM ID 191170   
HGNC ID HGNC:11998   
Unigene ID Hs.437460   
Ensembl ID ENSG00000141510   
PharmGKB ID -   

mRNA Information


mRNA ID NM_001126112.2
Exon join(1..174,10932..11030,11148..11169,11279..11557, 12315..12498,12580..12692,13261..13370,13714..13850, 13943..14016,16836..16942,17861..19149)  
mRNA Sequence

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Length 2591  



CDS Information


   
Location join(10957..11030,11148..11169,11279..11557,12315..12498, 12580..12692,13261..13370,13714..13850,13943..14016, 16836..16942,17861..17942)
CDS Sequence

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CCDS ID CCDS11118.1



Protein Information


      
Protein IDNP_000537.3
Protein Nametumor protein p53
Molecular Wt. (Da)43522
Protein Sequence

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Length 393  
Uniprot IDQ14623
Ensembl Protein ID ENSP00000295731  



Post-translational Modification Information (Source : HPRD)


Residue Type site
WProteolytic Cleavage23
KUbiquitination351
KUbiquitination357
SPhosphorylation366
KUbiquitination373
KUbiquitination386
SPhosphorylation392
SPhosphorylation15
TPhosphorylation55
SPhosphorylation371
SPhosphorylation378
SPhosphorylation392
SPhosphorylation6
SPhosphorylation9
TPhosphorylation18
SPhosphorylation15
TPhosphorylation18
SPhosphorylation20
SPhosphorylation33
SPhosphorylation37
TPhosphorylation81
TPhosphorylation18
KAcetylation305
KAcetylation370
KAcetylation372
KAcetylation373
KAcetylation381
KAcetylation382
SPhosphorylation20
SPhosphorylation15
SPhosphorylation20
SPhosphorylation37
SDephosphorylation315
SDephosphorylation315
SPhosphorylation33
SPhosphorylation46
SPhosphorylation15
SPhosphorylation20
SPhosphorylation33
SPhosphorylation37
SPhosphorylation46
SPhosphorylation9
KAcetylation320
SPhosphorylation15
TPhosphorylation18
SPhosphorylation20
SPhosphorylation37
KDeacylation382
TProteolytic Cleavage18
SProteolytic Cleavage20
TPhosphorylation18
SPhosphorylation392
TPhosphorylation18
SPhosphorylation315
SPhosphorylation392
SPhosphorylation315
SPhosphorylation33
TPhosphorylation155
SPhosphorylation33
SPhosphorylation315
SPhosphorylation392
KAcetylation292
SPhosphorylation15
SDephosphorylation15
KMethylation372
SPhosphorylation37
KDeacetylation373
KDeacetylation382
SPhosphorylation33
TPhosphorylation81
SPhosphorylation315
TDephosphorylation55
KUbiquitination319
KUbiquitination320
KUbiquitination321
KUbiquitination370
KUbiquitination372
KUbiquitination381
KUbiquitination386
KMethylation370
KNeddylation370
KNeddylation372
KNeddylation373
KNeddylation381
KNeddylation382
KNeddylation386
KNeddylation321
KNeddylation320
SPhosphorylation99;-
SPhosphorylation314
KAcetylation321
SPhosphorylation313

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
25ABL11809NP_009297.2in vitro;in vivo1   071   371   610   629   020   
58ACTA130NP_001091.1in vitro11821948   
142PARP11435NP_001609.2in vitro;in vivo95   656   081   289   852   300   000   000   
328APEX1136NP_542380.1in vivo9119221   
403ARL35260NP_004302.1yeast 2-hybrid16169070   
596BCL21045NP_000624.2in vitro;in vivo12667443   
672BRCA1218NP_009231.2in vitro;in vivo9   482   880   992   694   210   000   000   000   000   000   000   000   
695BTK2248NP_000052.1in vitro15355990   
890CCNA2453NP_001228.1in vitro10884347   
959CD40LG2311NP_000065.1in vivo12011072   
983CDK1302NP_001777.1in vitro;in vivo11327730   
995CDC25C1146NP_001781.2in vitro;in vivo1   085   303   816   753   140   
1031CDKN2C4534NP_001253.1yeast 2-hybrid16169070   
1380CR2399NP_001006659.1in vitro7753047   
1856DVL23690NP_004413.1yeast 2-hybrid1   618   951   416   713   560   
1869E2F11806NP_005216.1in vitro;in vivo11739724   
1938EEF2561NP_001952.1in vivo12891704   
1958EGR1549NP_001955.1in vitro;in vivo11251186   
2042EPHA31555NP_005224.2in vitro15355990   
2071ERCC3593NP_000113.1in vitro7663514   
2074ERCC6596NP_000115.1in vitro;in vivo10882116   
2079ERH9026NP_004441.1yeast 2-hybrid16169070   
2099ESR1589NP_000116.2in vitro10766163   
2547XRCC61071NP_001460.1in vivo15782130   
2908NR3C1679NP_001019265.1in vitro;in vivo11080152   
2965GTF2H11807NP_005307.1in vitro7935417   
3064HTT883NP_002102.4in vitro;in vivo10823891   
3065HDAC13143NP_004955.2in vitro;in vivo1   077   747   716   959   610   
3066HDAC25521NP_001518.2in vitro;in vivo10777477   
3146HMGB11228NP_002119.1in vitro;in vivo94   720   151   110   665   400   000   000   
3148HMGB21229NP_002120.1in vitro11748232   
3164NR4A1744NP_002126.2in vitro;in vivo;yeast 2-hybrid17139261   
3303HSPA1A774NP_005336.3in vivo7811761   
3315HSPB19076NP_001531.1yeast 2-hybrid16169070   
3320HSP90AA1777NP_001017963.2in vivo1   150   708   812   427   750   
3428IFI16969NP_005522.2in vivo11146555   
3910LAMA42532NP_001098676.1yeast 2-hybrid16169070   
4087SMAD23221NP_005892.1in vitro;in vivo12732139   
4088SMAD34380NP_005893.1in vitro;in vivo12732139   
4193MDM21272NP_002383.2in vitro;in vivo;yeast 2-hybrid1   643   219   612   867   030   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   000   
4691NCL1245NP_005372.2in vitro;in vivo12138209   
4792NFKBIA1235NP_065390.1in vivo;yeast 2-hybrid11799106   
4800NFYA1793NP_002496.1in vivo16959611   
4801NFYB1794NP_006157.1in vivo16959611   
4904YBX11095NP_004550.2in vitro;in vivo1   117   533   311   973   330   
5050PAFAH1B34354NP_002564.1yeast 2-hybrid16169070   
5245PHB1454NP_002625.1in vitro;in vivo14500729   
5272SERPINB93480NP_004146.1yeast 2-hybrid16169070   
5347PLK13652NP_005021.2in vivo;yeast 2-hybrid16753148   
5371PML23NP_150241.2in vitro;in vivo117   048   531   102   566   000   000   000   
5499PPP1CA15942NP_001008709.1yeast 2-hybrid15231748   
5521PPP2R2B5059NP_858062.1in vivo17245430   
5717PSMD115119NP_002806.2yeast 2-hybrid16169070   
5888RAD511557NP_597994.3in vitro;in vivo93   805   108   617   246   
6117RPA11565NP_002936.1in vitro;in vivo1   175   142   783   615   420   000   000   000   000   000   
6241RRM21587NP_001025.1in vivo12615712   
6275S100A415914NP_002952.1in vitro11   527   429   151   160   900   000   000   000   000   000   
6285S100B1505NP_006263.1in vitro1   152   742   910   876   240   
6303SAT12431NP_002961.1yeast 2-hybrid16169070   
6362CCL184784NP_002979.1yeast 2-hybrid16169070   
6602SMARCD13438NP_003067.3yeast 2-hybrid18303029   
6667SP11796NP_612482.2in vitro;in vivo9   492   043   157   903   100   000   000   000   000   000   
6670SP33483NP_003102.1in vitro;in vivo15790310   
6753SSTR31675NP_001042.1in vivo8961277   
6783SULT1E18966NP_005411.1yeast 2-hybrid16169070   
6811STX54426NP_003155.2yeast 2-hybrid16169070   
7006TEC2786NP_003206.2in vitro15355990   
7020TFAP2A128NP_003211.1in vitro;in vivo;yeast 2-hybrid12226108   
7027TFDP11792NP_009042.1in vitro;in vivo8816502   
7150TOP1535NP_003277.1in vitro;in vivo104   686   128   639   538   
7153TOP2A536NP_001058.2in vitro;in vivo10666337   
7155TOP2B537NP_001059.2in vitro;in vivo10666337   
7314UBB6771NP_061828.1in vitro;in vivo12421820   
7572ZNF241921NP_008896.2yeast 2-hybrid16169070   
8841HDAC38950NP_003874.2in vitro;in vivo10777477   
8894EIF2S24882NP_003899.2yeast 2-hybrid16169070   
9522SCAMP16072NP_004857.4yeast 2-hybrid16713569   
9587MAD2L1BP10065NP_001003690.1yeast 2-hybrid16169070   
10063COX175314NP_005685.1yeast 2-hybrid16169070   
10200MPHOSPH616111NP_005783.2yeast 2-hybrid16169070   
10301DLEU116150NP_005878.1yeast 2-hybrid16169070   
10425ARIH29286NP_006312.1yeast 2-hybrid16169070   
10524KAT53245NP_874369.1in vivo16601686   
10571-10240NP_006771.1yeast 2-hybrid16169070   
11200CHEK25084NP_001005735.1in vitro17157788   
22948CCT56468NP_036205.1yeast 2-hybrid16169070   
29903CCDC1069995NP_037433.2yeast 2-hybrid16169070   
53826FXYD69456AAQ89335.1yeast 2-hybrid16169070   
54819ZCCHC1015699NP_060135.1yeast 2-hybrid16169070   
55339WDR3311680NP_060853.3yeast 2-hybrid16169070   
55643BTBD212252NP_060267.2yeast 2-hybrid16169070   
56144PCDHA47322NP_061730.1yeast 2-hybrid16169070   
65990FAM173A14500NP_076422.1yeast 2-hybrid16169070   
80204FBXO116985NP_079409.3in vitro;in vivo17098746   
199745THAP815501NP_689871.1yeast 2-hybrid16169070   
286514MAGEB186647NP_775970.1yeast 2-hybrid1   618   951   416   713   560   


Pathway Information


                                                                                                                                                                                                                        
Pathway Name Pathway ID
Amyotrophic lateral sclerosis (ALS) hsa05014
Apoptosis hsa04210
Basal cell carcinoma hsa05217
Bladder cancer hsa05219
Cell cycle hsa04110
Central carbon metabolism in cancer hsa05230
Chronic myeloid leukemia hsa05220
Colorectal cancer hsa05210
Endometrial cancer hsa05213
Epstein-Barr virus infection hsa05169
Glioma hsa05214
Hepatitis B hsa05161
Hepatitis C hsa05160
Herpes simplex infection hsa05168
HTLV-I infection hsa05166
Huntington's disease hsa05016
Longevity regulating pathway - mammal hsa04211
MAPK signaling pathway hsa04010
Measles hsa05162
Melanoma hsa05218
MicroRNAs in cancer hsa05206
Neurotrophin signaling pathway hsa04722
Non-small cell lung cancer hsa05223
p53 signaling pathway hsa04115
Pancreatic cancer hsa05212
Pathways in cancer hsa05200
PI3K-Akt signaling pathway hsa04151
Prostate cancer hsa05215
Proteoglycans in cancer hsa05205
Small cell lung cancer hsa05222
Sphingolipid signaling pathway hsa04071
Thyroid cancer hsa05216
Thyroid hormone signaling pathway hsa04919
Transcriptional misregulation in cancer hsa05202
Viral carcinogenesis hsa05203
Wnt signaling pathway hsa04310


Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd08367109-288  P53
cl14608109-288  P53 superfamily
pfam0087095-289  P53
pfam07710324-359  P53_tetramer
cl06653324-359  P53_tetramer superfamily
pfam0856329-May  P53_TAD
cl0724629-May  P53_TAD superfamily


Ontology Information


   
HPRD ID988
Molecular ClassTranscription factor
Molecular FunctionCytokine activity (GO:0005125)
Biological ProcessImmune response (GO:0006955)  



SNP Information


View SNP Geneview Report   

Drug Information


Uniprot ID DrugBank ID Name Type
P04637DB00945Acetylsalicylic acidSmallMoleculeDrug

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO