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General Information
| Gene_Symbol | Gene_ID | Gene_Name | Chromosome | Alias |
|---|---|---|---|---|
| UBTF | 7343 | Upstream binding transcription factor, RNA polymerase I  | 17 | UBF; UBF1; UBF-1; NOR-90  |
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 22968445    | 2012 | Cell line : - Source : Department of Pathology of Wrocaw Medical University. Sample Type : CRC tumor and normal tissue No. of Sample : 8 Stage : - | Laser capture microdissection,FFPE-FASP,SAX fractionation,LC-MSMS,Label-free quantitation. | Up-regulation | - | A list of genes including this gene are differentially expressed analysed by LC-MS/MS technique. To compare the proteomes of colonic mucosa (normal or N) and colon cancer (cancer or C), we analyzed archival FFPE clinical samples originating from eight patients. |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | - |
| Description | This gene encodes a member of the HMG-box DNA-binding protein family. The encoded protein plays a critical role in ribosomal RNA transcription as a key component of the pre-initiation complex, mediating the recruitment of RNA polymerase I to rDNA promoter regions. The encoded protein may also play important roles in chromatin remodeling and pre-rRNA processing, and its activity is regulated by both phosphorylation and acetylation. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. Pseudogenes of this gene are located on the short arm of chromosomes 3, 11 and X and the long arm of chromosome 11. [provided by RefSeq, Aug 2011]   |
| Chromosome | 17 |
| Location | 17q21.31 |
| Start | 44205033   |
| End | 44221626   |
| Strand | +   |
| Gene Sequence |    Download   Select all |
| Length | 16594   |
| OMIM ID | 600673    |
| HGNC ID | HGNC:12511    |
| Unigene ID | Hs.89781     |
| Ensembl ID | ENSG00000108312    |
| PharmGKB ID | -    |
mRNA Information
| mRNA ID | NM_001076683.1 |
|---|---|
| Exon | join(745..887,3331..3455,4923..5098,5638..5721,5818..5973, 8345..8409,8688..8808,9621..9754,9880..10021,10296..10337, 10475..10588,10680..10835,11154..11309,11393..11503, 11894..11982,12086..12275,13716..13763,13857..13928, 14030..14173,14260..16594)   | mRNA Sequence |    Download   Select all |
| Length | 4635   |
CDS Information
| Location | join(3398..3455,4923..5098,5638..5721,5818..5973, 8345..8409,8688..8808,9621..9754,9880..10021,10296..10337, 10475..10588,10680..10835,11154..11309,11393..11503, 11894..11982,12086..12275,13716..13763,13857..13928, 14030..14173,14260..14385) |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | CCDS42346.1 |    
Protein Information
| Protein ID | NP_001070151.1 |
|---|---|
| Protein Name | Upstream binding transcription factor, RNA polymerase I |
| Molecular Wt. (Da) | 84806 |
| Protein Sequence |    Download   Select all |
| Length | 727   |
| Uniprot ID | Q14126 |    
| Ensembl Protein ID | ENSP00000261590   |    
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| T | Phosphorylation | 117 |
| T | Phosphorylation | 201 |
| T | Phosphorylation | 117 |
| T | Phosphorylation | 201 |
| S | Phosphorylation | 389 |
| S | Phosphorylation | 484 |
| T | Phosphorylation | 201 |
| T | Phosphorylation | 201 |
| S | Phosphorylation | 412 |
| S | Phosphorylation | 375 |
| S | Phosphorylation | 375 |
| S | Phosphorylation | 447 |
| S | Phosphorylation | 447 |
| S | Phosphorylation | 495 |
| S | Phosphorylation | 458 |
| S | Phosphorylation | 458 |
| S | Phosphorylation | 638 |
| S | Phosphorylation | 601 |
| S | Phosphorylation | 601 |
| S | Phosphorylation | 23 |
| S | Phosphorylation | 23 |
| S | Phosphorylation | 23 |
| S | Phosphorylation | 666 |
| S | Phosphorylation | 629 |
| S | Phosphorylation | 629 |
| S | Phosphorylation | 273 |
| S | Phosphorylation | 236 |
| S | Phosphorylation | 236 |
| S | Phosphorylation | 449 |
| S | Phosphorylation | 412 |
| S | Phosphorylation | 412 |
| S | Phosphorylation | 557 |
| S | Phosphorylation | 520 |
| S | Phosphorylation | 520 |
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING)      View   
| Interactant Gene ID (Source: HPRD) | Gene Symbol | HPRD ID | Ref Seq ID | Technique | References |
|---|---|---|---|---|---|
| 890 |    CCNA2 |    453 |    NP_001228.1 |    in vitro;in vivo |    11698641    |
| 1060 |    CENPC1 |    315 |    NP_001803.2 |    in vitro;in vivo |    8702533    |
| 1457 |    CSNK2A1 |    277 |    NP_001886.1 |    in vitro;in vivo |    7651819    |
| 3667 |    IRS1 |    943 |    NP_005535.1 |    in vivo |    12554758    |
| 5925 |    RB1 |    1574 |    NP_000312.2 |    in vitro;in vivo |    11042686    |
| 5934 |    RBL2 |    1576 |    NP_005602.3 |    in vivo |    11042686    |
| 6872 |    TAF1 |    2436 |    NP_004597.2 |    in vitro;in vivo;yeast 2-hybrid |    12498690    |
| 6908 |    TBP |    2511 |    NP_003185.1 |    in vivo |    8552083    |
| 10849 |    CD3EAP |    125 |    NP_036231.1 |    in vitro |    9426281    |
| 51176 |    LEF1 |    1075 |    NP_057353.1 |    in vivo |    12748295    |
Pathway Information
No matching records could be found.
Structure Information
| PDB ID | 1K99 |
|---|---|
| Resolution | - |
| Method | solution NMR |
| Chains | A   |
| Molecule | Upstream binding factor 1   |
| Model | View |
Domain Information
| ID | Location | Description |
|---|---|---|
| cd01390 | 112-177  | HMGB-UBF_HMG-box |
| cl00082 | 112-177  | HMG-box superfamily |
| cd01390 | 407-470  | HMGB-UBF_HMG-box |
| cl00082 | 407-470  | HMG-box superfamily |
| cd01390 | 196-261  | HMGB-UBF_HMG-box |
| cl00082 | 196-261  | HMG-box superfamily |
| cd01390 | 299-358  | HMGB-UBF_HMG-box |
| cl00082 | 299-358  | HMG-box superfamily |
| cd01390 | 569-631  | HMGB-UBF_HMG-box |
| cl00082 | 569-631  | HMG-box superfamily |
| cd01390 | 482-546  | HMGB-UBF_HMG-box |
| cl00082 | 482-546  | HMG-box superfamily |
| pfam14887 | 479-562  | HMG_box_5 |
| pfam00505 | 112-180  | HMG_box |
| cd00084 | 112-177  | HMG-box |
| cd00084 | 407-470  | HMG-box |
| pfam00505 | 407-469  | HMG_box |
| smart00398 | 112-180  | HMG |
| smart00398 | 406-469  | HMG |
| cd00084 | 196-260  | HMG-box |
| smart00398 | 196-263  | HMG |
| cd00084 | 299-358  | HMG-box |
| cd01389 | 406-470  | MATA_HMG-box |
| cd00084 | 568-628  | HMG-box |
| smart00398 | 567-633  | HMG |
| smart00398 | 297-358  | HMG |
| cd01388 | 408-466  | SOX-TCF_HMG-box |
| smart00398 | 482-549  | HMG |
| cd01388 | 113-185  | SOX-TCF_HMG-box |
| pfam00505 | 196-263  | HMG_box |
| PTZ00199 | 407-470  | PTZ00199 |
| pfam09011 | 299-361  | HMG_box_2 |
| COG5648 | 348-547  | NHP6B |
| COG5648 | 103-262  | NHP6B |
| PTZ00121 | 239-646  | PTZ00121 |
Ontology Information
| HPRD ID | 3165 |    
|---|---|
| Molecular Class | Unknown |
| Molecular Function | Hydrolase activity (GO:0016787) |
| Biological Process | DNA replication (GO:0006260)   |
Drug Information
No matching records could be found.
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    
