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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
UBTF 7343 Upstream binding transcription factor, RNA polymerase I  17UBF; UBF1; UBF-1; NOR-90 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
22968445   2012Cell line : -

Source : Department of Pathology of Wrocaw Medical University.

Sample Type : CRC tumor and normal tissue

No. of Sample : 8

Stage : -

Laser capture microdissection,FFPE-FASP,SAX fractionation,LC-MSMS,Label-free quantitation.Up-regulation-A list of genes including this gene are differentially expressed analysed by LC-MS/MS technique.

To compare the proteomes of colonic mucosa (normal or N) and colon cancer (cancer or C), we analyzed archival FFPE clinical samples originating from eight patients.


Gene Details



Chromosome: 17; NC_000017.10 (42282401..42298994, complement)

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Gene Type protein coding
Gene Family -
Description This gene encodes a member of the HMG-box DNA-binding protein family. The encoded protein plays a critical role in ribosomal RNA transcription as a key component of the pre-initiation complex, mediating the recruitment of RNA polymerase I to rDNA promoter regions. The encoded protein may also play important roles in chromatin remodeling and pre-rRNA processing, and its activity is regulated by both phosphorylation and acetylation. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. Pseudogenes of this gene are located on the short arm of chromosomes 3, 11 and X and the long arm of chromosome 11. [provided by RefSeq, Aug 2011]  
Chromosome 17
Location 17q21.31
Start 44205033  
End 44221626  
Strand +  
Gene Sequence

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Length 16594  
OMIM ID 600673   
HGNC ID HGNC:12511   
Unigene ID Hs.89781    
Ensembl ID ENSG00000108312   
PharmGKB ID -   

mRNA Information


mRNA ID NM_001076683.1
Exon join(745..887,3331..3455,4923..5098,5638..5721,5818..5973, 8345..8409,8688..8808,9621..9754,9880..10021,10296..10337, 10475..10588,10680..10835,11154..11309,11393..11503, 11894..11982,12086..12275,13716..13763,13857..13928, 14030..14173,14260..16594)  
mRNA Sequence

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Length 4635  



CDS Information


   
Location join(3398..3455,4923..5098,5638..5721,5818..5973, 8345..8409,8688..8808,9621..9754,9880..10021,10296..10337, 10475..10588,10680..10835,11154..11309,11393..11503, 11894..11982,12086..12275,13716..13763,13857..13928, 14030..14173,14260..14385)
CDS Sequence

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CCDS ID CCDS42346.1



Protein Information


      
Protein IDNP_001070151.1
Protein NameUpstream binding transcription factor, RNA polymerase I
Molecular Wt. (Da)84806
Protein Sequence

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Length 727  
Uniprot IDQ14126
Ensembl Protein ID ENSP00000261590  



Post-translational Modification Information (Source : HPRD)


Residue Type site
TPhosphorylation117
TPhosphorylation201
TPhosphorylation117
TPhosphorylation201
SPhosphorylation389
SPhosphorylation484
TPhosphorylation201
TPhosphorylation201
SPhosphorylation412
SPhosphorylation375
SPhosphorylation375
SPhosphorylation447
SPhosphorylation447
SPhosphorylation495
SPhosphorylation458
SPhosphorylation458
SPhosphorylation638
SPhosphorylation601
SPhosphorylation601
SPhosphorylation23
SPhosphorylation23
SPhosphorylation23
SPhosphorylation666
SPhosphorylation629
SPhosphorylation629
SPhosphorylation273
SPhosphorylation236
SPhosphorylation236
SPhosphorylation449
SPhosphorylation412
SPhosphorylation412
SPhosphorylation557
SPhosphorylation520
SPhosphorylation520

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                                                      
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
890CCNA2453NP_001228.1in vitro;in vivo11698641   
1060CENPC1315NP_001803.2in vitro;in vivo8702533   
1457CSNK2A1277NP_001886.1in vitro;in vivo7651819   
3667IRS1943NP_005535.1in vivo12554758   
5925RB11574NP_000312.2in vitro;in vivo11042686   
5934RBL21576NP_005602.3in vivo11042686   
6872TAF12436NP_004597.2in vitro;in vivo;yeast 2-hybrid12498690   
6908TBP2511NP_003185.1in vivo8552083   
10849CD3EAP125NP_036231.1in vitro9426281   
51176LEF11075NP_057353.1in vivo12748295   


Pathway Information


No matching records could be found.

Structure Information


PDB ID1K99
Resolution-
Methodsolution NMR
Chains A  
Molecule Upstream binding factor 1  
Model View



Domain Information




ID Location Description
cd01390112-177  HMGB-UBF_HMG-box
cl00082112-177  HMG-box superfamily
cd01390407-470  HMGB-UBF_HMG-box
cl00082407-470  HMG-box superfamily
cd01390196-261  HMGB-UBF_HMG-box
cl00082196-261  HMG-box superfamily
cd01390299-358  HMGB-UBF_HMG-box
cl00082299-358  HMG-box superfamily
cd01390569-631  HMGB-UBF_HMG-box
cl00082569-631  HMG-box superfamily
cd01390482-546  HMGB-UBF_HMG-box
cl00082482-546  HMG-box superfamily
pfam14887479-562  HMG_box_5
pfam00505112-180  HMG_box
cd00084112-177  HMG-box
cd00084407-470  HMG-box
pfam00505407-469  HMG_box
smart00398112-180  HMG
smart00398406-469  HMG
cd00084196-260  HMG-box
smart00398196-263  HMG
cd00084299-358  HMG-box
cd01389406-470  MATA_HMG-box
cd00084568-628  HMG-box
smart00398567-633  HMG
smart00398297-358  HMG
cd01388408-466  SOX-TCF_HMG-box
smart00398482-549  HMG
cd01388113-185  SOX-TCF_HMG-box
pfam00505196-263  HMG_box
PTZ00199407-470  PTZ00199
pfam09011299-361  HMG_box_2
COG5648348-547  NHP6B
COG5648103-262  NHP6B
PTZ00121239-646  PTZ00121


Ontology Information


   
HPRD ID3165
Molecular ClassUnknown
Molecular FunctionHydrolase activity (GO:0016787)
Biological ProcessDNA replication (GO:0006260)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO