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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
BCL6 604 B-cell CLL/lymphoma 6  3ZBTB27, LAZ3, BCL5, BCL6A 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
25973304   2015Cell line : -

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : 22 normal colorectal mucosa, 22 microadenoma,22 colorectal cancer

Stage : -

real time RT-PCR, methylation specific PCR, Flow cytometry and western blottingMethylation-Methylation of BCL6B is a prognostic and chemo-sensitive marker in colorectal cancer. BCL6B suppresses colorectal cancer growth by activating P53 signaling.

24220798   2014Cell line : RKO, HT 29, DLD1, LOVO, HCT116, SW480, SW620

Source : AJCC and Paiteint sample from Chinese PLA General Hospital.

Sample Type : CRC tumor

No. of Sample : 102

Stage : TNM Stage I-IV

Immunohistochemistry, immunofluorescence coupled with confocal microscopy and western blotting.Up-regulation-The increasing expression of BCL6 in human colorectal cancer development suggests the involvement of BCL6 in tumor progression, from the earliest stages of carcinogenesis with significant increase in cancer.


Gene Details



NC_000003.11 (187439165..187463513, complement)

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Gene Type protein coding
Gene Family -, "Zinc fingers, C2H2-type", "BTB/POZ domain containing"
Description The protein encoded by this gene is a zinc finger transcription factor and contains an N-terminal POZ domain. This protein acts as a sequence-specific repressor of transcription, and has been shown to modulate the transcription of STAT-dependent IL-4 responses of B cells. This protein can interact with a variety of POZ-containing proteins that function as transcription corepressors. This gene is found to be frequently translocated and hypermutated in diffuse large-cell lymphoma (DLCL), and may be involved in the pathogenesis of DLCL. Alternatively spliced transcript variants encoding different protein isoforms have been found for this gene. [provided by RefSeq, Aug 2015]  
Chromosome 3
Location 3q27
Start 187439165  
End 187463513  
Strand -  
Gene Sequence

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Length 24349  
OMIM ID 109565   
HGNC ID HGNC:1001   
Unigene ID Hs.478588   
Ensembl ID ENSG00000113916   
PharmGKB ID PA25312   

mRNA Information


mRNA ID NM_001706.4
Exon join(1..316,10819..10857,12023..12193,13796..14017, 15705..16676,17182..17366,18828..18995,20097..20227, 20648..20785,23125..24349)  
mRNA Sequence

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Length 3575  



CDS Information


   
Location366..2486
CDS Sequence

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CCDS ID CCDS3289.1



Protein Information


      
Protein IDNP_001697.2
Protein NameB-cell CLL/lymphoma 6
Molecular Wt. (Da)78716
Protein Sequence

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Length 706  
Uniprot IDP08254
Ensembl Protein ID ENSP00000299855  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation308
SPhosphorylation308

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                           
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
2033EP3004078NP_001420.2in vitro;in vivo12402037   
5467PPARD2679NP_006229.1in vitro;in vivo12970571   
5594MAPK11496NP_002736.3in vitro9649500   
23683PRKD36151NP_005804.1in vivo16147992   
65266WNK43505NP_115763.2in vivo16147992   


Pathway Information


            
Pathway Name Pathway ID
FoxO signaling pathway hsa04068
Transcriptional misregulation in cancer hsa05202


Structure Information


No matching records could be found.

Domain Information




ID Location Description
pfam0065122-128  BTB
cl0251822-128  BTB superfamily
smart0022533-126  BTB
pfam13465588-613  zf-H2C2_2
cl22375588-613  zf-H2C2_2 superfamily
pfam13465616-641  zf-H2C2_2
cl22375616-641  zf-H2C2_2 superfamily
pfam13465645-669  zf-H2C2_2
cl22375645-669  zf-H2C2_2 superfamily
pfam13465560-585  zf-H2C2_2
cl22375560-585  zf-H2C2_2 superfamily
PHA0309834-125  PHA03098
PHA0271313-126  PHA02713
COG5189543-648  SFP1
COG5048572-636  COG5048
PHA03247172-426  PHA03247


Ontology Information


   
HPRD ID1525
Molecular ClassTranscription factor
Molecular FunctionMetallopeptidase activity (GO:0008237)
Biological ProcessProtein metabolism (GO:0019538)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO