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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
CHD9 80205 chromodomain helicase DNA binding protein 9  16FLJ12178, KIAA0308, BC022889 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
21447119   2011Cell line : -

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : 28 GC with high MSI (MSI-H), 45 GCs with low MSI (MSI-L)/stable MSI (MSS), 35 CRCs with MSI-H and 45 CRCs with MSI-L/MSS.

Stage : -

Single-strand conformation polymorphism analysis.Frameshift Mutation--


Gene Details



NC_000016.9 (53088905..53361414)

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Gene Type protein coding
Gene Family -
Description -  
Chromosome 16
Location 16q12.2
Start 53088905  
End 53361414  
Strand +  
Gene Sequence

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Length 272510  
OMIM ID -   
HGNC ID HGNC:25701   
Unigene ID Hs.59159   
Ensembl ID -   
PharmGKB ID PA128394727   

mRNA Information


mRNA ID ?NM_001308319.1
Exon  
mRNA Sequence

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Length  



CDS Information


   
Location
CDS Sequence

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CCDS ID CCDS45485.1



Protein Information


      
Protein IDNP_001295248.1
Protein Namechromodomain helicase DNA binding protein 9
Molecular Wt. (Da)0
Protein Sequence

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Length 2897  
Uniprot IDQ96IG2
Ensembl Protein ID ENSP00000264658  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation1472;-
SPhosphorylation1468;-
SPhosphorylation550
SPhosphorylation611
SPhosphorylation612
TPhosphorylation625
TPhosphorylation2013
SPhosphorylation2026
SPhosphorylation2286
KAcetylation499
KAcetylation490
SPhosphorylation2094
SPhosphorylation2058
SPhosphorylation2059
SPhosphorylation616
TPhosphorylation1777

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                           
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
2099ESR1589NP_000116.2in vitro16554032   
2908NR3C1679NP_001019265.1in vitro;in vivo16523501   
5465PPARA1369NP_001001930.1in vitro;in vivo16554032   
6256RXRA1577NP_002948.1in vitro16554032   
9970NR1I34858NP_001070950.1in vitro16554032   


Pathway Information


No matching records could be found.

Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd000791182-1304  HELICc
cl214551182-1304  P-loop_NTPase superfamily
cd00046879-1028  DEXDc
cl21455879-1028  P-loop_NTPase superfamily
cd00024692-752  CHROMO
cl17459692-752  CHROMO superfamily
cd00024774-826  CHROMO
cl17459774-826  CHROMO superfamily
smart004901212-1296  HELICc
pfam002711216-1296  Helicase_C
smart005922556-2600  BRK
cl026882556-2600  BRK superfamily
pfam075332481-2522  BRK
cl026882481-2522  BRK superfamily
smart005922482-2531  BRK
pfam075332554-2598  BRK
smart00298692-754  CHROMO
pfam00385774-827  Chromo
pfam00385691-750  Chromo
smart00298774-829  CHROMO
pfam00270861-1028  DEAD
pfam08601185-453  PAP1
cl07280185-453  PAP1 superfamily
pfam00176863-1150  SNF2_N
PLN03142811-1480  PLN03142
COG0553623-1359  HepA
smart00487854-1051  DEXDc
COG1061859-1316  SSL2
COG5422176-362  ROM1
pfam114961144-1357  HDA2-3
COG504880-479  COG5048
COG1203714-1088  Cas3
COG5641161-558  GAT1
COG509977-356  COG5099
PTZ00121511-755  PTZ00121


Ontology Information


   
HPRD ID6164
Molecular ClassDNA binding protein
Molecular FunctionMolecular function unknown (GO:0005554)
Biological ProcessRegulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism (GO:0019219)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO