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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
CLTA 1211 Clathrin, light chain (Lca)  9LCA 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
17848589   2007Cell line : -

Source : Tumor Bank Network established at the Centro Nacional de Investigaciones Oncologicas (CNIO).

Sample Type : -

No. of Sample : -

Stage : -

Antibody Microarrays,Protein Labeling and Microarray Assay,Tissue Microarray Design and ImmunohistochemistryUp-regulation1.65-


Gene Details



Chromosome: 9; NC_000009.11 (36190853..36212059)

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Gene Type protein coding
Gene Family -
Description Clathrin is a large, soluble protein composed of heavy and light chains. It functions as the main structural component of the lattice-type cytoplasmic face of coated pits and vesicles which entrap specific macromolecules during receptor-mediated endocytosis. This gene encodes one of two clathrin light chain proteins which are believed to function as regulatory elements. Alternative splicing results in multiple transcript variants. Related pseudogenes have been identified on chromosomes 8 and 12. [provided by RefSeq, May 2010]  
Chromosome 9
Location 9p13
Start 36190856  
End 36212062  
Strand +  
Gene Sequence

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Length 21207  
OMIM ID 118960   
HGNC ID HGNC:2090   
Unigene ID Hs.522114    
Ensembl ID ENSG00000122705   
PharmGKB ID -   

mRNA Information


mRNA ID NM_007096.3
Exon join(1..418,6696..6733,8124..8241,13213..13324, 18412..18465,19770..19805,20748..21207)  
mRNA Sequence

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Length 1246  



CDS Information


   
Locationjoin(202..418,6696..6733,8124..8241,13213..13324, 18412..18465,19770..19805,20748..20919)
CDS Sequence

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CCDS ID CCDS6601.1



Protein Information


      
Protein IDNP_001070145.1
Protein NameClathrin, light chain (Lca)
Molecular Wt. (Da)25545
Protein Sequence

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Length 236  
Uniprot IDP25445
Ensembl Protein ID ENSP00000347426  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation206
SPhosphorylation176
SPhosphorylation194
SPhosphorylation236
SPhosphorylation206
SPhosphorylation224
SPhosphorylation105
SPhosphorylation105
SPhosphorylation105
SPhosphorylation109
SPhosphorylation109
SPhosphorylation109

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

               
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
1213CLTC350NP_004850.1in vitro;yeast 2-hybrid124   263   792   406   259   


Pathway Information


                                    
Pathway Name Pathway ID
Bacterial invasion of epithelial cells hsa05100
Endocrine and other factor-regulated calcium reabsorption hsa04961
Endocytosis hsa04144
Huntington's disease hsa05016
Lysosome hsa04142
Synaptic vesicle cycle hsa04721


Structure Information


No matching records could be found.

Domain Information




ID Location Description
pfam0108620-247  Clathrin_lg_ch
cl0309120-247  Clathrin_lg_ch superfamily
pfam0615285-184  Phage_min_cap2
cl1007285-184  Phage_Mu_F superfamily
COG388398-184  CwlO1


Ontology Information


   
HPRD ID609
Molecular ClassStructural protein
Molecular FunctionReceptor activity (GO:0004872)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO