Search results:
General Information
| Gene_Symbol | Gene_ID | Gene_Name | Chromosome | Alias |
|---|---|---|---|---|
| HDAC1 | 3065 | Histone deacetylase 1  | 1 | HD1; RPD3; GON-10; RPD3L1  |
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 16309230    | 2005 | Cell line : - Source : - Sample Type : CRC tumor and normal tissue No. of Sample : 40 Stage : - | RT-PCR | Up-regulation | - |
|
| 17720775    | 2007 | Cell line : - Source : Yamagata Prefectural Central Hospital. Sample Type : CRC tumor and normal tissue No. of Sample : 64 Stage : - | Immunohistochemistry, In situ hybridisation (ISH) and RT-PCR | Up-regulation | - | Tissue samples were obtained from 64 patients with colorectal carcinoma who underwent surgical resection. |
| 18347167    | 2008 | Cell line : - Source : - Sample Type : CRC tumor and normal tissue No. of Sample : 40 Stage : - | Immunohistochemistry | Up-regulation | - | The strong prognostic impact of HDAC isoforms in colorectal cancer, the interactions of HDACs with tumor cell proliferation and differentiation in vivo. |
| 18789002    | 2009 | Cell line : SW480, SW620, KM12C, KM12L4, HT29, HCT116, Colo201, Colo205 and Ls174T Source : - Sample Type : CRC tumor and normal tissue No. of Sample : 18 Stage : - | RT-PCR, Western blotting, Flow cytometry | Up-regulation | - | HDAC1 and HDAC3 are up-regulated in colon cancer cells and in primary colon cancer. These studies show that cancer cells effectively maintain low levels of pyruvate to prevent inhibition of HDAC1/HDAC3 and thereby to evade cell death. |
| 21151932    | 2010 | Cell line : - Source : Fatebenefratelli Hospital in Benevento. Sample Type : - No. of Sample : - Stage : - | Western blotting, immunohistochemistry, methylation specific -PCR and bisulphite sequencing. | Up-regulation | - | Transcriptional silencing is due to the recruitment of MeCP2, HDAC1 and EZH2 that impart repressive chromatin signatures determining an increased cell proliferative and invasive potentia and epigenetic silencing of PPARG in CRC that may be relevant as a prognostic marker of tumor progression. |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | - |
| Description | Histone acetylation and deacetylation, catalyzed by multisubunit complexes, play a key role in the regulation of eukaryotic gene expression. The protein encoded by this gene belongs to the histone deacetylase/acuc/apha family and is a component of the histone deacetylase complex. It also interacts with retinoblastoma tumor-suppressor protein and this complex is a key element in the control of cell proliferation and differentiation. Together with metastasis-associated protein-2, it deacetylates p53 and modulates its effect on cell growth and apoptosis. [provided by RefSeq, Jul 2008]   | Chromosome | 1 |
| Location | 1p34 |
| Start | 32292107   |
| End | 32333628   |
| Strand | +   |
| Gene Sequence |    Download   Select all |
| Length | 41522   |
| OMIM ID | 601241    |
| HGNC ID | HGNC:4852    |
| Unigene ID | Hs.88556     |
| Ensembl ID | ENSG00000116478    |
| PharmGKB ID | -    |
mRNA Information
| mRNA ID | NM_004964.2 |
|---|---|
| Exon | join(1..112,10515..10627,24559..24676,32373..32447, 34833..34971,35430..35571,36962..37054,38472..38580, 38662..38802,39368..39476,39570..39700,39984..40136, 40595..40643,40911..41517)   | mRNA Sequence |    Download   Select all |
| Length | 2091   |
CDS Information
| Location | join(64..112,10515..10627,24559..24676,32373..32447, 34833..34971,35430..35571,36962..37054,38472..38580, 38662..38802,39368..39476,39570..39700,39984..40136, 40595..40643,40911..40938) |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | CCDS360.1 |    
Protein Information
| Protein ID | NP_004955.2 |
|---|---|
| Protein Name | Histone deacetylase 1 |
| Molecular Wt. (Da) | 54972 |
| Protein Sequence |    Download   Select all |
| Length | 482   |
| Uniprot ID | P00915 |    
| Ensembl Protein ID | ENSP00000392338   |    
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| K | Sumoylation | 444 |
| S | Phosphorylation | 421 |
| S | Phosphorylation | 423 |
| S | Phosphorylation | 421 |
| S | Phosphorylation | 423 |
| Y | Phosphorylation | 221;- |
| S | Phosphorylation | 421;- |
| S | Phosphorylation | 393;- |
| S | Phosphorylation | 406 |
| S | Phosphorylation | 409 |
| S | Phosphorylation | 410 |
| K | Acetylation | 89 |
| K | Acetylation | 220 |
| K | Acetylation | 74 |
| K | Acetylation | 361 |
| Y | Phosphorylation | 222 |
| Y | Phosphorylation | 226 |
| Y | Phosphorylation | 237 |
Enzyme Information
| EC | 3.5.1.98 |    
|---|---|
| Name | histone deacetylase HDAC |
| Class | Hydrolases; Acting on carbon-nitrogen bonds, other than peptide bonds; In linear amides |
| Sysname |   |
| Substrate |   |
| Product |   |
| Reaction (IUBMB) | ![]() |
PPi Information
(Click to view network : Source STRING)      View   
| Interactant Gene ID (Source: HPRD) | Gene Symbol | HPRD ID | Ref Seq ID | Technique | References |
|---|---|---|---|---|---|
| 367 |    AR |    2437 |    NP_000035.2 |    in vitro;in vivo |    11994312    |
| 546 |    ATRX |    2069 |    NP_000480.2 |    in vivo |    14645126    |
| 672 |    BRCA1 |    218 |    NP_009231.2 |    in vitro;in vivo |    10220405    |
| 699 |    BUB1 |    3907 |    NP_004327.1 |    in vitro |    15388328    |
| 701 |    BUB1B |    4176 |    NP_001202.4 |    in vitro |    15388328    |
| 864 |    RUNX3 |    2565 |    AAH13362.1 |    in vitro;in vivo |    15138260    |
| 991 |    CDC20 |    4686 |    NP_001246.2 |    in vitro |    15388328    |
| 999 |    CDH1 |    1885 |    BAA88957.1 |    in vitro |    15388328    |
| 1643 |    DDB2 |    2886 |    NP_000098.1 |    in vitro |    8602529    |
| 1786 |    DNMT1 |    532 |    NP_001124295.1 |    in vitro;in vivo |    10615135    |
| 2122 |    MECOM |    1310 |    NP_001098547.3 |    in vitro;in vivo |    11568182    |
| 2287 |    FKBP3 |    1743 |    NP_002004.1 |    in vitro;in vivo |    11532945    |
| 2290 |    FOXG1 |    1283 |    NP_005240.3 |    in vitro;in vivo |    11238932    |
| 4193 |    MDM2 |    1272 |    NP_002383.2 |    in vivo |    12426395    |
| 4654 |    MYOD1 |    1166 |    NP_002469.2 |    in vitro |    1   128   523   711   684   020    |
| 4790 |    NFKB1 |    1238 |    NP_003989.2 |    in vitro;in vivo |    1   193   176   914   678   980    |
| 4792 |    NFKBIA |    1235 |    NP_065390.1 |    in vivo |    12972430    |
| 5111 |    PCNA |    1456 |    NP_002583.1 |    in vitro;in vivo |    11929879    |
| 5245 |    PHB |    1454 |    NP_002625.1 |    in vivo |    12466959    |
| 5371 |    PML |    23 |    NP_150241.2 |    in vitro;in vivo |    1   143   082   611   259   570    |
| 5467 |    PPARD |    2679 |    NP_006229.1 |    in vivo |    11867749    |
| 5757 |    PTMA |    1778 |    NP_001092755.1 |    in vitro |    12634383    |
| 5925 |    RB1 |    1574 |    NP_000312.2 |    in vivo |    9   491   888   108   888   860   000   000   000   000   000   000   000    |
| 5926 |    ARID4A |    1575 |    NP_002883.3 |    in vivo |    10490602    |
| 5933 |    RBL1 |    312 |    NP_002886.2 |    in vitro;in vivo |    9724731    |
| 5934 |    RBL2 |    1576 |    NP_005602.3 |    in vitro;in vivo |    972   473   110   969   803    |
| 5970 |    RELA |    1241 |    NP_068810.3 |    in vitro;in vivo |    11564889    |
| 5981 |    RFC1 |    24 |    NP_002904.3 |    in vitro;in vivo |    12045192    |
| 5984 |    RFC4 |    22 |    NP_002907.1 |    in vitro |    12045192    |
| 6667 |    SP1 |    1796 |    NP_612482.2 |    in vitro;in vivo |    118   966   131   190   996   000   000   000    |
| 6774 |    STAT3 |    26 |    NP_644805.1 |    in vivo |    15653507    |
| 6839 |    SUV39H1 |    2221 |    NP_003164.1 |    in vitro;in vivo |    1   178   871   010   873   450    |
| 6886 |    TAL1 |    1753 |    NP_003180.1 |    in vitro;in vivo |    10688671    |
| 7026 |    NR2F2 |    139 |    NP_066285.1 |    in vitro |    10704340    |
| 7050 |    TGIF1 |    4023 |    NP_733796.2 |    in vitro;in vivo |    1   122   616   318   511   900    |
| 7153 |    TOP2A |    536 |    NP_001058.2 |    in vitro;in vivo |    11136718    |
| 7155 |    TOP2B |    537 |    NP_001059.2 |    in vitro;in vivo |    11136718    |
| 7164 |    TPD52L1 |    7236 |    NP_003278.1 |    yeast 2-hybrid |    16169070    |
| 8379 |    MAD1L1 |    4065 |    NP_003541.2 |    in vitro |    15388328    |
| 9612 |    NCOR2 |    2910 |    NP_006303.3 |    in vivo |    11739383    |
| 9643 |    MORF4L2 |    2326 |    NP_036418.1 |    in vitro;in vivo |    14506250    |
| 10856 |    RUVBL2 |    16070 |    NP_006657.1 |    in vitro;in vivo |    15829968    |
| 23013 |    SPEN |    10230 |    NP_055816.2 |    in vivo |    11331609    |
| 23309 |    SIN3B |    9691 |    NP_056075.1 |    in vitro |    11959842    |
| 29843 |    SENP1 |    7153 |    NP_055369.1 |    in vitro;in vivo |    15199155    |
Pathway Information
| Pathway Name | Pathway ID |
|---|---|
| Alcoholism |    hsa05034 |    
| Amphetamine addiction |    hsa05031 |    
| Cell cycle |    hsa04110 |    
| Chronic myeloid leukemia |    hsa05220 |    
| Epstein-Barr virus infection |    hsa05169 |    
| Huntington's disease |    hsa05016 |    
| Longevity regulating pathway - multiple species |    hsa04213 |    
| MicroRNAs in cancer |    hsa05206 |    
| Notch signaling pathway |    hsa04330 |    
| Pathways in cancer |    hsa05200 |    
| Thyroid hormone signaling pathway |    hsa04919 |    
| Transcriptional misregulation in cancer |    hsa05202 |    
| Viral carcinogenesis |    hsa05203 |    
Structure Information
No matching records could be found.
Domain Information
| ID | Location | Description |
|---|---|---|
| cd10010 | 4-374  | HDAC1 |
| cl17011 | 4-374  | Arginase_HDAC superfamily |
| cd10011 | 8-373  | HDAC2 |
| cd10005 | 9-387  | HDAC3 |
| cd09991 | 14-319  | HDAC_classI |
| cd10004 | 8-382  | RPD3-like |
| cd11598 | 11-319  | HDAC_Hos2 |
| cd10000 | 29-370  | HDAC8 |
| cd09301 | 34-319  | HDAC |
| COG0123 | 13-340  | AcuC |
| cd09994 | 12-313  | HDAC_AcuC_like |
| pfam00850 | 22-320  | Hist_deacetyl |
| cd11680 | 34-319  | HDAC_Hos1 |
| PTZ00346 | 15-325  | PTZ00346 |
| cd09992 | 28-311  | HDAC_classII |
| cd09993 | 28-310  | HDAC_classIV |
| cd09996 | 26-340  | HDAC_classII_1 |
| cd10001 | 27-311  | HDAC_classII_APAH |
| cd09987 | 107-319  | Arginase_HDAC |
| cd10002 | 24-311  | HDAC10_HDAC6-dom1 |
| cd10003 | 27-325  | HDAC6-dom2 |
| cd11600 | 27-329  | HDAC_Clr3 |
| cd11681 | 28-284  | HDAC_classIIa |
| cd10008 | 28-301  | HDAC7 |
| cd10006 | 28-301  | HDAC4 |
| cd10007 | 28-281  | HDAC5 |
| cd11599 | 28-277  | HDAC_classII_2 |
| cd10009 | 20-281  | HDAC9 |
| cd11682 | 28-309  | HDAC6-dom1 |
| cd11683 | 32-316  | HDAC10 |
| cd09998 | 140-185  | HDAC_Hos3 |
| PTZ00063 | 7-387  | PTZ00063 |
Ontology Information
| HPRD ID | 265 |    
|---|---|
| Molecular Class | Transcription regulatory protein |
| Molecular Function | Catalytic activity (GO:0003824) |
| Biological Process | Metabolism (GO:0008152); Energy pathways (GO:0006091)   |
Drug Information
| Uniprot ID | DrugBank ID | Name | Type |
|---|---|---|---|
| Q13547 | DB02546 | Vorinostat | SmallMoleculeDrug |
| Q13547 | DB06603 | Panobinostat | SmallMoleculeDrug |
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    

