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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
HDAC1 3065 Histone deacetylase 1  1HD1; RPD3; GON-10; RPD3L1 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
16309230   2005Cell line : -

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : 40

Stage : -

RT-PCRUp-regulation-

17720775   2007Cell line : -

Source : Yamagata Prefectural Central Hospital.

Sample Type : CRC tumor and normal tissue

No. of Sample : 64

Stage : -

Immunohistochemistry, In situ hybridisation (ISH) and RT-PCRUp-regulation-Tissue samples were obtained from 64 patients with colorectal carcinoma who underwent surgical resection.

18347167   2008Cell line : -

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : 40

Stage : -

ImmunohistochemistryUp-regulation-The strong prognostic impact of HDAC isoforms in colorectal cancer, the interactions of HDACs with tumor cell proliferation and differentiation in vivo.

18789002   2009Cell line : SW480, SW620, KM12C, KM12L4, HT29, HCT116, Colo201, Colo205 and Ls174T

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : 18

Stage : -

RT-PCR, Western blotting, Flow cytometryUp-regulation-HDAC1 and HDAC3 are up-regulated in colon cancer cells and in primary colon cancer.

These studies show that cancer cells effectively maintain low levels of pyruvate to prevent inhibition of HDAC1/HDAC3 and thereby to evade cell death.

21151932   2010Cell line : -

Source : Fatebenefratelli Hospital in Benevento.

Sample Type : -

No. of Sample : -

Stage : -

Western blotting, immunohistochemistry, methylation specific -PCR and bisulphite sequencing. Up-regulation-Transcriptional silencing is due to the recruitment of MeCP2, HDAC1 and EZH2 that impart repressive chromatin signatures determining an increased cell proliferative and invasive potentia and epigenetic silencing of PPARG in CRC that may be relevant as a prognostic marker of tumor progression.


Gene Details



Chromosome: 1; NC_000001.10 (32757708..32799224)

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Gene Type protein coding
Gene Family -
Description Histone acetylation and deacetylation, catalyzed by multisubunit complexes, play a key role in the regulation of eukaryotic gene expression. The protein encoded by this gene belongs to the histone deacetylase/acuc/apha family and is a component of the histone deacetylase complex. It also interacts with retinoblastoma tumor-suppressor protein and this complex is a key element in the control of cell proliferation and differentiation. Together with metastasis-associated protein-2, it deacetylates p53 and modulates its effect on cell growth and apoptosis. [provided by RefSeq, Jul 2008]  
Chromosome 1
Location 1p34
Start 32292107  
End 32333628  
Strand +  
Gene Sequence

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Length 41522  
OMIM ID 601241   
HGNC ID HGNC:4852   
Unigene ID Hs.88556    
Ensembl ID ENSG00000116478   
PharmGKB ID -   

mRNA Information


mRNA ID NM_004964.2
Exon join(1..112,10515..10627,24559..24676,32373..32447, 34833..34971,35430..35571,36962..37054,38472..38580, 38662..38802,39368..39476,39570..39700,39984..40136, 40595..40643,40911..41517)  
mRNA Sequence

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Length 2091  



CDS Information


   
Location join(64..112,10515..10627,24559..24676,32373..32447, 34833..34971,35430..35571,36962..37054,38472..38580, 38662..38802,39368..39476,39570..39700,39984..40136, 40595..40643,40911..40938)
CDS Sequence

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CCDS ID CCDS360.1



Protein Information


      
Protein IDNP_004955.2
Protein NameHistone deacetylase 1
Molecular Wt. (Da)54972
Protein Sequence

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Length 482  
Uniprot IDP00915
Ensembl Protein ID ENSP00000392338  



Post-translational Modification Information (Source : HPRD)


Residue Type site
KSumoylation444
SPhosphorylation421
SPhosphorylation423
SPhosphorylation421
SPhosphorylation423
YPhosphorylation221;-
SPhosphorylation421;-
SPhosphorylation393;-
SPhosphorylation406
SPhosphorylation409
SPhosphorylation410
KAcetylation89
KAcetylation220
KAcetylation74
KAcetylation361
YPhosphorylation222
YPhosphorylation226
YPhosphorylation237

Enzyme Information


   
EC3.5.1.98
Namehistone deacetylase
HDAC
ClassHydrolases; Acting on carbon-nitrogen bonds, other than peptide bonds; In linear amides
Sysname  
Substrate  
Product  
Reaction (IUBMB)



PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
367AR2437NP_000035.2in vitro;in vivo11994312   
546ATRX2069NP_000480.2in vivo14645126   
672BRCA1218NP_009231.2in vitro;in vivo10220405   
699BUB13907NP_004327.1in vitro15388328   
701BUB1B4176NP_001202.4in vitro15388328   
864RUNX32565AAH13362.1in vitro;in vivo15138260   
991CDC204686NP_001246.2in vitro15388328   
999CDH11885BAA88957.1in vitro15388328   
1643DDB22886NP_000098.1in vitro8602529   
1786DNMT1532NP_001124295.1in vitro;in vivo10615135   
2122MECOM1310NP_001098547.3in vitro;in vivo11568182   
2287FKBP31743NP_002004.1in vitro;in vivo11532945   
2290FOXG11283NP_005240.3in vitro;in vivo11238932   
4193MDM21272NP_002383.2in vivo12426395   
4654MYOD11166NP_002469.2in vitro1   128   523   711   684   020   
4790NFKB11238NP_003989.2in vitro;in vivo1   193   176   914   678   980   
4792NFKBIA1235NP_065390.1in vivo12972430   
5111PCNA1456NP_002583.1in vitro;in vivo11929879   
5245PHB1454NP_002625.1in vivo12466959   
5371PML23NP_150241.2in vitro;in vivo1   143   082   611   259   570   
5467PPARD2679NP_006229.1in vivo11867749   
5757PTMA1778NP_001092755.1in vitro12634383   
5925RB11574NP_000312.2in vivo9   491   888   108   888   860   000   000   000   000   000   000   000   
5926ARID4A1575NP_002883.3in vivo10490602   
5933RBL1312NP_002886.2in vitro;in vivo9724731   
5934RBL21576NP_005602.3in vitro;in vivo972   473   110   969   803   
5970RELA1241NP_068810.3in vitro;in vivo11564889   
5981RFC124NP_002904.3in vitro;in vivo12045192   
5984RFC422NP_002907.1in vitro12045192   
6667SP11796NP_612482.2in vitro;in vivo118   966   131   190   996   000   000   000   
6774STAT326NP_644805.1in vivo15653507   
6839SUV39H12221NP_003164.1in vitro;in vivo1   178   871   010   873   450   
6886TAL11753NP_003180.1in vitro;in vivo10688671   
7026NR2F2139NP_066285.1in vitro10704340   
7050TGIF14023NP_733796.2in vitro;in vivo1   122   616   318   511   900   
7153TOP2A536NP_001058.2in vitro;in vivo11136718   
7155TOP2B537NP_001059.2in vitro;in vivo11136718   
7164TPD52L17236NP_003278.1yeast 2-hybrid16169070   
8379MAD1L14065NP_003541.2in vitro15388328   
9612NCOR22910NP_006303.3in vivo11739383   
9643MORF4L22326NP_036418.1in vitro;in vivo14506250   
10856RUVBL216070NP_006657.1in vitro;in vivo15829968   
23013SPEN10230NP_055816.2in vivo11331609   
23309SIN3B9691NP_056075.1in vitro11959842   
29843SENP17153NP_055369.1in vitro;in vivo15199155   


Pathway Information


                                                                              
Pathway Name Pathway ID
Alcoholism hsa05034
Amphetamine addiction hsa05031
Cell cycle hsa04110
Chronic myeloid leukemia hsa05220
Epstein-Barr virus infection hsa05169
Huntington's disease hsa05016
Longevity regulating pathway - multiple species hsa04213
MicroRNAs in cancer hsa05206
Notch signaling pathway hsa04330
Pathways in cancer hsa05200
Thyroid hormone signaling pathway hsa04919
Transcriptional misregulation in cancer hsa05202
Viral carcinogenesis hsa05203


Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd100104-374  HDAC1
cl170114-374  Arginase_HDAC superfamily
cd100118-373  HDAC2
cd100059-387  HDAC3
cd0999114-319  HDAC_classI
cd100048-382  RPD3-like
cd1159811-319  HDAC_Hos2
cd1000029-370  HDAC8
cd0930134-319  HDAC
COG012313-340  AcuC
cd0999412-313  HDAC_AcuC_like
pfam0085022-320  Hist_deacetyl
cd1168034-319  HDAC_Hos1
PTZ0034615-325  PTZ00346
cd0999228-311  HDAC_classII
cd0999328-310  HDAC_classIV
cd0999626-340  HDAC_classII_1
cd1000127-311  HDAC_classII_APAH
cd09987107-319  Arginase_HDAC
cd1000224-311  HDAC10_HDAC6-dom1
cd1000327-325  HDAC6-dom2
cd1160027-329  HDAC_Clr3
cd1168128-284  HDAC_classIIa
cd1000828-301  HDAC7
cd1000628-301  HDAC4
cd1000728-281  HDAC5
cd1159928-277  HDAC_classII_2
cd1000920-281  HDAC9
cd1168228-309  HDAC6-dom1
cd1168332-316  HDAC10
cd09998140-185  HDAC_Hos3
PTZ000637-387  PTZ00063


Ontology Information


   
HPRD ID265
Molecular ClassTranscription regulatory protein
Molecular FunctionCatalytic activity (GO:0003824)
Biological ProcessMetabolism (GO:0008152); Energy pathways (GO:0006091)  



SNP Information


View SNP Geneview Report   

Drug Information


Uniprot ID DrugBank ID Name Type
Q13547DB02546VorinostatSmallMoleculeDrug
Q13547DB06603PanobinostatSmallMoleculeDrug

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO