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General Information
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 22968445 | 2012 | Cell line : - Source : Department of Pathology of Wrocaw Medical University. Sample Type : CRC tumor and normal tissue No. of Sample : 8 Stage : - | Laser capture microdissection,FFPE-FASP,SAX fractionation,LC-MSMS,Label-free quantitation. | Up-regulation | 6.6 | - |
Gene Details
| Gene Type | protein coding |
|---|---|
| Gene Family | High mobility group / Non-canonical |
| Description | - | Chromosome | 15 |
| Location | 15q24 |
| Start | 77420651 |
| End | 77485603 |
| Strand | + |
| Gene Sequence | Download Select all |
| Length | 64953 |
| OMIM ID | 605534 |
| HGNC ID | HGNC:5001 |
| Unigene ID | Hs.69594 |
| Ensembl ID | ENSG00000140382 |
| PharmGKB ID | PA29331 |
mRNA Information
| mRNA ID | NM_018200.3 |
|---|---|
| Exon | join(1..354,27069..27161,37754..37846,43590..43737, 46445..46657,50260..50392,51133..51164,56905..56980, 57645..57860,58529..58671,62320..64953) | mRNA Sequence | Download Select all |
| Length | 4153 |
CDS Information
| Location | join(37758..37846,43590..43737,46445..46657,50260..50392, 51133..51164,56905..56980,57645..57860,58529..58665) |
|---|---|
| CDS Sequence | Download Select all |
| CCDS ID | - |
Protein Information
| Protein ID | NP_060670.1 |
|---|---|
| Protein Name | High-mobility group 20A |
| Molecular Wt. (Da) | 40013 |
| Protein Sequence | Download Select all |
| Length | 347 |
| Uniprot ID | Q12929 |
| Ensembl Protein ID | ENSP00000281172 |
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| S | Phosphorylation | 105 |
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING) View
No matching records from HPRD source could be found.
Pathway Information
No matching records could be found.
Structure Information
No matching records could be found.
Domain Information
| ID | Location | Description |
|---|---|---|
| cd01390 | 103-168 | HMGB-UBF_HMG-box |
| cl00082 | 103-168 | HMG-box superfamily |
| cd00084 | 103-168 | HMG-box |
| pfam00505 | 103-170 | HMG_box |
| smart00398 | 102-170 | HMG |
| PTZ00199 | 82-172 | PTZ00199 |
| cd01388 | 104-166 | SOX-TCF_HMG-box |
| pfam09011 | 101-170 | HMG_box_2 |
| cd01389 | 103-171 | MATA_HMG-box |
| COG5648 | 88-180 | NHP6B |
| TIGR02169 | 149-294 | SMC_prok_A |
Ontology Information
| HPRD ID | 533 |
|---|---|
| Molecular Class | Transcription regulatory protein |
| Molecular Function | DNA repair protein (GO:0003685) |
| Biological Process | Regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism (GO:0019219) |
Drug Information
No matching records could be found.