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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
HNRPDL 9987 Heterogeneous nuclear ribonucleoprotein D-like  4HNRNP; JKTBP; HNRPDL; JKTBP2; laAUF1 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
20089989   2010Cell line : -

Source : Nanfang Hospital tumour tissue bank.

Sample Type : -

No. of Sample : -

Stage : -

Biochemical isolation to nano-LC-MS/MS analysis Unknown--

20812987   2010Cell line : -

Source : VU University Medical Center, Amsterdam, The Netherlands.

Sample Type : CRC tumor and normal tissue

No. of Sample : -

Stage : TNM Stage II

2-D Gel electrophoresis, and mass spectrometry,Western blotting, ImmunohistochemistryUp-regulation-This gene differentially expressed in between normal colorectal tissue and colorectal cancer tissue experiment done by 2-D Gel eclectrophotesis

In total, 150 patients were involved in the study.


Gene Details



Chromosome: 4; NC_000004.11 (83343717..83351378, complement)

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Gene Type protein coding
Gene Family RNA binding motif (RRM) containing
Description This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has two RRM domains that bind to RNAs. Three alternatively spliced transcript variants have been described for this gene. One of the variants is probably not translated because the transcript is a candidate for nonsense-mediated mRNA decay. The protein isoforms encoded by this gene are similar to its family member HNRPD. [provided by RefSeq, May 2011]  
Chromosome 4
Location 4q21.22
Start 82422564  
End 82430225  
Strand +  
Gene Sequence

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Length 7662  
OMIM ID 607137   
HGNC ID HGNC:5037   
Unigene ID Hs.527105    
Ensembl ID ENSG00000152795   
PharmGKB ID -   

mRNA Information


mRNA ID NM_001207000.1
Exon join(1..978,1780..1948,2047..2208,2662..2793,2922..3036, 4097..4189,5343..7662)  
mRNA Sequence

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Length 3986  



CDS Information


   
Locationjoin(536..978,1780..1948,2047..2208,2662..2793,2922..3036, 4097..4167)
CDS Sequence

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CCDS ID CCDS75153.1



Protein Information


      
Protein IDNP_112740.1
Protein NameHeterogeneous nuclear ribonucleoprotein D-like
Molecular Wt. (Da)46307
Protein Sequence

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Length 420  
Uniprot IDP29323
Ensembl Protein ID ENSP00000363761  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation241
RMethylation408
SPhosphorylation241;-
KAcetylation216
KAcetylation216
SPhosphorylation127
SPhosphorylation127
YPhosphorylation126
YPhosphorylation126
SPhosphorylation24
SPhosphorylation24
SPhosphorylation300
SPhosphorylation300

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

No matching records from HPRD source could be found.

Pathway Information


No matching records could be found.

Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd12585234-308  RRM2_hnRPDL
cl17169234-308  RRM_SF superfamily
cd12758149-224  RRM1_hnRPDL
cl17169149-224  RRM_SF superfamily
cd12575150-223  RRM1_hnRNPD_like
cd12329234-308  RRM2_hnRNPD_like
cd12757149-223  RRM1_hnRNPAB
cd12325150-221  RRM1_hnRNPA_hnRNPD_like
cd12583234-308  RRM2_hnRNPD
cd12584229-308  RRM2_hnRNPAB
cd12756150-223  RRM1_hnRNPD
cd12576150-223  RRM1_MSI
cd12577150-223  RRM1_Hrp1p
cd12574149-221  RRM1_DAZAP1
cd12578149-223  RRM1_hnRNPA_like
cd12760149-223  RRM1_MSI2
cd12759149-223  RRM1_MSI1
cd12330149-223  RRM2_Hrp1p
cd12323234-307  RRM2_MSI
cd12582233-312  RRM2_hnRNPA3
cd12321154-221  RRM1_TDP43
cd12328234-306  RRM2_hnRNPA_like
cd12580233-308  RRM2_hnRNPA1
cd12762149-225  RRM1_hnRNPA2B1
cd12763149-223  RRM1_hnRNPA3
cd12328149-221  RRM2_hnRNPA_like
cd12761149-223  RRM1_hnRNPA1
cd12330234-308  RRM2_Hrp1p
cd12323149-222  RRM2_MSI
cd12325236-306  RRM1_hnRNPA_hnRNPD_like
cd12384149-216  RRM_RBM24_RBM38_like
cd12327233-310  RRM2_DAZAP1
pfam00076235-302  RRM_1
cd12326149-224  RRM1_hnRNPA0
cd12382148-224  RRM_RBMX_like
cd12581233-312  RRM2_hnRNPA2B1
cd00590151-222  RRM_SF
cd00590235-307  RRM_SF
cd12579149-223  RRM2_hnRNPA0
cd12327149-223  RRM2_DAZAP1
pfam00076151-218  RRM_1
cd12576236-308  RRM1_MSI
cd12399149-216  RRM_HP0827_like
cd12321234-311  RRM1_TDP43
cd12578234-311  RRM1_hnRNPA_like
cd12573233-308  RRM2_MSI2
cd12757234-298  RRM1_hnRNPAB
cd12449148-218  RRM_CIRBP_RBM3
cd12572234-306  RRM2_MSI1
cd12415151-223  RRM3_RBM28_like
cd12573149-223  RRM2_MSI2
cd12579234-312  RRM2_hnRNPA0
cd12572149-222  RRM2_MSI1
cd12242149-219  RRM_SLIRP
cd12284236-292  RRM2_RBM23_RBM39
cd12447149-224  RRM1_gar2
cd12412149-223  RRM_DAZL_BOULE
cd12580149-223  RRM2_hnRNPA1
cd12347235-285  RRM_PPIE
cd12384233-292  RRM_RBM24_RBM38_like
cd12322149-218  RRM2_TDP43
cd12760234-308  RRM1_MSI2
cd12759234-308  RRM1_MSI1
cd12575235-311  RRM1_hnRNPD_like
cd12399234-292  RRM_HP0827_like
cd12272151-218  RRM2_PHIP1
cd12756235-312  RRM1_hnRNPD
cd12382232-285  RRM_RBMX_like
cd12584149-223  RRM2_hnRNPAB
cd12398151-201  RRM_CSTF2_RNA15_like
cd12581149-223  RRM2_hnRNPA2B1
cd12674150-218  RRM1_Nop4p
cd12242234-298  RRM_SLIRP
cd12231234-283  RRM2_U2AF65
cd12450150-218  RRM1_NUCLs
cd12400150-218  RRM_Nop6
cd12582149-223  RRM2_hnRNPA3
cd12311152-219  RRM_SRSF2_SRSF8
cd12574234-298  RRM1_DAZAP1
cd12316149-218  RRM3_RBM19_RRM2_MRD1
cd12449234-288  RRM_CIRBP_RBM3
cd12322233-308  RRM2_TDP43
cd12365235-285  RRM_RNPS1
cd12414155-218  RRM2_RBM28_like
cd12758234-298  RRM1_hnRPDL
cd12237230-307  RRM_snRNP35
cd12408240-285  RRM_eIF3G_like
cd12363154-222  RRM_TRA2
cd12577235-311  RRM1_Hrp1p
cd12363235-285  RRM_TRA2
cd12237150-231  RRM_snRNP35
cd12306151-218  RRM_II_PABPs
cd12724233-293  RRM1_CPEB2_like
cd12236233-288  RRM_snRNP70
cd12412232-294  RRM_DAZL_BOULE
cd12229146-222  RRM_G3BP
cd12395151-218  RRM2_RBM34
cd12400235-297  RRM_Nop6
cd12566233-292  RRM2_MRD1
cd12226235-296  RRM_NOL8
cd12451149-215  RRM2_NUCLs
cd12413235-311  RRM1_RBM28_like
cd12370234-307  RRM1_PUF60
cd12316234-285  RRM3_RBM19_RRM2_MRD1
cd12283151-215  RRM1_RBM39_like
cd12763233-311  RRM1_hnRNPA3
cd12326234-308  RRM1_hnRNPA0
cd12302231-286  RRM_scSet1p_like
cd12454235-313  RRM2_RIM4_like
cd12566146-218  RRM2_MRD1
cd12236150-231  RRM_snRNP70
cd12411235-284  RRM_ist3_like
cd12761233-311  RRM1_hnRNPA1
cd12387151-219  RRM3_hnRNPM_like
cd12380151-223  RRM3_I_PABPs
cd12284150-215  RRM2_RBM23_RBM39
cd12272235-292  RRM2_PHIP1
cd12448150-216  RRM2_gar2
cd12411151-201  RRM_ist3_like
cd12306235-291  RRM_II_PABPs
cd12362150-224  RRM3_CELF1-6
cd12298234-309  RRM3_Prp24
cd12371234-281  RRM2_PUF60
cd12229234-294  RRM_G3BP
cd12361234-285  RRM1_2_CELF1-6_like
cd12271235-292  RRM1_PHIP1
cd12240235-285  RRM_NCBP2
cd12311237-308  RRM_SRSF2_SRSF8
cd12372151-223  RRM_CFIm68_CFIm59
cd12346235-265  RRM3_NGR1_NAM8_like
cd12613150-198  RRM2_NGR1_NAM8_like
cd12290235-293  RRM1_LARP7
cd12298149-219  RRM3_Prp24
cd12398235-285  RRM_CSTF2_RNA15_like
cd12408155-215  RRM_eIF3G_like
cd12379148-238  RRM2_I_PABPs
cd12303235-281  RRM_spSet1p_like
cd12361149-216  RRM1_2_CELF1-6_like
cd12391151-216  RRM1_SART3
cd12762233-311  RRM1_hnRNPA2B1
cd12235150-222  RRM_PPIL4
cd12448235-297  RRM2_gar2
cd12251233-310  RRM3_hnRNPR_like
cd12347150-199  RRM_PPIE
cd12464146-209  RRM_G3BP2
cd12451234-292  RRM2_NUCLs
cd12249235-310  RRM1_hnRNPR_like
cd12353150-196  RRM2_TIA1_like
cd12291235-294  RRM1_La
cd12775147-232  RRM2_HuB
cd12458246-306  RRM_AtC3H46_like
cd12567234-281  RRM3_RBM19
cd12383146-218  RRM_RBM42
cd12371149-203  RRM2_PUF60
cd12279150-223  RRM_TUT1
cd12345150-206  RRM2_SECp43_like
cd12633234-308  RRM1_FCA
cd12656235-283  RRM3_HuD
cd12350150-224  RRM3_SHARP
cd12670235-291  RRM2_Nop12p_like
cd12463146-217  RRM_G3BP1
cd12271151-218  RRM1_PHIP1
cd12534235-283  RRM_SARFH
cd12226151-194  RRM_NOL8
cd12415233-293  RRM3_RBM28_like
cd12567146-196  RRM3_RBM19
cd12324235-281  RRM_RBM8
cd12552235-285  RRM_Nop15p
cd12353235-285  RRM2_TIA1_like
cd12413151-224  RRM1_RBM28_like
cd12395235-292  RRM2_RBM34
cd12418149-219  RRM_Aly_REF_like
cd12773150-215  RRM2_HuR
cd12279235-309  RRM_TUT1
cd12235231-285  RRM_PPIL4
cd12389150-225  RRM2_RAVER
cd12642154-224  RRM_TRA2A
cd12774147-231  RRM2_HuD
cd12352235-283  RRM1_TIA1_like
cd12397150-209  RRM2_Nop13p_fungi
cd12674235-291  RRM1_Nop4p
cd12654235-283  RRM3_HuB
cd12672228-294  RRM_DAZL
cd12318151-219  RRM5_RBM19_like
cd12776147-231  RRM2_HuC
cd12377235-285  RRM3_Hu
cd12228231-289  RRM_ENOX
cd12283235-292  RRM1_RBM39_like
cd12655235-283  RRM3_HuC
cd12336150-218  RRM_RBM7_like
cd12297235-285  RRM2_Prp24
cd12243151-215  RRM1_MSSP
cd12335150-207  RRM2_SF3B4
cd12671235-285  RRM_CSTF2_CSTF2T
cd12447234-292  RRM1_gar2
cd12336235-292  RRM_RBM7_like
cd12564237-291  RRM1_RBM19
cd12366231-282  RRM1_RBM45
cd12454151-211  RRM2_RIM4_like
cd12290151-224  RRM1_LARP7
cd12644150-223  RRM_CFIm59
cd12332234-282  RRM1_p54nrb_like
cd12446149-216  RRM_RBM25
cd12335235-281  RRM2_SF3B4
cd12723234-313  RRM1_CPEB1
cd12676150-206  RRM3_Nop4p
cd12365152-218  RRM_RNPS1
cd12357235-296  RRM_PPARGC1A_like
cd12641154-218  RRM_TRA2B
cd12670150-227  RRM2_Nop12p_like
cd12391235-291  RRM1_SART3
cd12231149-223  RRM2_U2AF65
cd12559150-218  RRM_SRSF10
cd12319150-219  RRM4_MRD1
cd12464234-294  RRM_G3BP2
cd12571234-296  RRM6_RBM19
cd12619150-206  RRM2_PUB1
cd12307235-285  RRM_NIFK_like
cd12406233-311  RRM4_NCL
cd12380235-292  RRM3_I_PABPs
cd12354235-285  RRM3_TIA1_like
cd12672150-207  RRM_DAZL
cd12375240-308  RRM1_Hu_like
cd12224236-285  RRM_RBM22
cd12310235-281  RRM3_Spen
cd12376150-210  RRM2_Hu_like
cd12407163-223  RRM_FOX1_like
cd12355149-218  RRM_RBM18
cd12652150-196  RRM2_Hu
cd12673149-207  RRM_BOULE
cd12344237-293  RRM1_SECp43_like
cd12417150-218  RRM_SAFB_like
cd12225235-311  RRM1_2_CID8_like
cd12551150-222  RRM_II_PABPN1L
cd12312233-283  RRM_SRSF10_SRSF12
cd12619235-293  RRM2_PUB1
cd12565234-308  RRM1_MRD1
cd12392149-218  RRM2_SART3
cd12334235-285  RRM1_SF3B4
cd12375158-224  RRM1_Hu_like
cd12313154-218  RRM1_RRM2_RBM5_like
cd12463234-294  RRM_G3BP1
cd12259235-287  RRM_SRSF11_SREK1
cd12653235-285  RRM3_HuR
cd12367158-221  RRM2_RBM45
cd12617235-284  RRM2_TIAR
cd12617150-196  RRM2_TIAR
cd12608149-222  RRM1_CoAA
cd12524236-312  RRM1_MEI2_like
cd12414234-282  RRM2_RBM28_like
cd12771235-293  RRM1_HuB
cd12650160-218  RRM1_Hu
cd12676235-291  RRM3_Nop4p
cd12675149-218  RRM2_Nop4p
cd12393163-210  RRM_ZCRB1
cd12618235-281  RRM2_TIA1
cd12450235-311  RRM1_NUCLs
cd12357150-207  RRM_PPARGC1A_like
cd12444233-300  RRM1_CPEBs
cd12394235-292  RRM1_RBM34
cd12302154-251  RRM_scSet1p_like
cd12378151-218  RRM1_I_PABPs
cd12618150-196  RRM2_TIA1
cd12406150-224  RRM4_NCL
cd12637234-285  RRM2_FCA
cd12636233-297  RRM2_Bruno_like
cd12636149-201  RRM2_Bruno_like
cd12770235-293  RRM1_HuD
cd12650240-289  RRM1_Hu
cd12565161-207  RRM1_MRD1
cd12313231-295  RRM1_RRM2_RBM5_like
cd12559235-309  RRM_SRSF10
cd12402232-308  RRM_eIF4B
cd12312150-198  RRM_SRSF10_SRSF12
cd12223235-303  RRM_SR140
cd12483234-302  RRM1_hnRNPQ
cd12307162-200  RRM_NIFK_like
cd12280235-283  RRM_FET
cd12634147-200  RRM2_CELF1_2
cd12378236-292  RRM1_I_PABPs
cd12303151-198  RRM_spSet1p_like
cd12337149-216  RRM1_SRSF4_like
cd12397235-292  RRM2_Nop13p_fungi
cd12635147-200  RRM2_CELF3_4_5_6
cd12402151-218  RRM_eIF4B
cd12632149-204  RRM1_CELF3_4_5_6
cd12373149-224  RRM_SRSF3_like
cd12233235-292  RRM_Srp1p_AtRSp31_like
cd12320233-293  RRM6_RBM19_RRM5_MRD1
cd12673232-292  RRM_BOULE
cd12373234-285  RRM_SRSF3_like
cd12550150-222  RRM_II_PABPN1
cd12315234-285  RRM1_RBM19_MRD1
cd12612235-311  RRM2_SECp43
cd12320149-200  RRM6_RBM19_RRM5_MRD1
cd12348235-283  RRM1_SHARP
cd12671150-201  RRM_CSTF2_CSTF2T
cd12273235-293  RRM1_NEFsp
cd12315149-207  RRM1_RBM19_MRD1
cd12394151-218  RRM1_RBM34
cd12724149-217  RRM1_CPEB2_like
cd12334151-218  RRM1_SF3B4
cd12355234-293  RRM_RBM18
cd12482234-302  RRM1_hnRNPR
cd12403150-223  RRM1_NCL
cd12343149-218  RRM1_2_CoAA_like
cd12626234-305  RRM1_IGF2BP2
cd12260235-291  RRM2_SREK1
cd12243235-293  RRM1_MSSP
cd12606149-219  RRM1_RBM4
cd12679150-218  RRM_SAFB1_SAFB2
cd12227150-218  RRM_SCAF4_SCAF8
cd12370148-196  RRM1_PUF60
cd12247231-285  RRM2_U1A_like
cd12651150-196  RRM2_SXL
cd12552150-218  RRM_Nop15p
cd12564160-222  RRM1_RBM19
cd12470143-206  RRM1_MSSP1
cd12592233-287  RRM_RBM7
cd12345235-300  RRM2_SECp43_like
cd12396235-299  RRM1_Nop13p_fungi
cd12772235-293  RRM1_HuC
pfam13893164-218  RRM_5
cd12309150-198  RRM2_Spen
cd12571149-211  RRM6_RBM19
cd12560235-283  RRM_SRSF12
cd12560150-206  RRM_SRSF12
cd12641237-292  RRM_TRA2B
cd12658149-221  RRM1_MYEF2
cd12772166-224  RRM1_HuC
cd12613235-291  RRM2_NGR1_NAM8_like
cd12381164-216  RRM4_I_PABPs
cd12612150-207  RRM2_SECp43
cd12484234-285  RRM1_RBM46
cd12341151-214  RRM_hnRNPC_like
cd12632234-289  RRM1_CELF3_4_5_6
cd12409149-217  RRM1_RRT5
cd12614235-283  RRM1_PUB1
cd12610184-234  RRM1_SECp43
cd12771150-206  RRM1_HuB
cd12446233-287  RRM_RBM25
cd12642237-292  RRM_TRA2A
cd12536162-229  RRM1_RBM39
cd12269235-283  RRM_Vip1_like
cd12346151-218  RRM3_NGR1_NAM8_like
cd12223150-218  RRM_SR140
cd12595234-283  RRM1_SRSF5
cd12366162-237  RRM1_RBM45
cd12350233-283  RRM3_SHARP
cd12623235-281  RRM_PPARGC1A
cd12596149-225  RRM1_SRSF6
cd12227235-308  RRM_SCAF4_SCAF8
cd12254152-218  RRM_hnRNPH_ESRPs_RBM12_like
cd12598234-307  RRM1_SRSF9
cd12401232-292  RRM_eIF4H
cd12662149-219  RRM3_MYEF2
cd12392232-284  RRM2_SART3
cd12622235-285  RRM3_PUB1
cd12482149-201  RRM1_hnRNPR
cd12292239-293  RRM2_La_like
cd12332149-194  RRM1_p54nrb_like
cd12523233-264  RRM2_MRN1
cd12541150-216  RRM2_La
cd12407246-308  RRM_FOX1_like
cd12770150-224  RRM1_HuD
cd12396150-218  RRM1_Nop13p_fungi
cd12599235-294  RRM1_SF2_plant_like
cd12225151-208  RRM1_2_CID8_like
cd12637149-196  RRM2_FCA
cd12337234-284  RRM1_SRSF4_like
cd12368177-202  RRM3_RBM45
cd12483149-200  RRM1_hnRNPQ
cd12485234-289  RRM1_RBM47
cd12643150-208  RRM_CFIm68
pfam08777235-294  RRM_3
cd12372235-292  RRM_CFIm68_CFIm59
cd12639150-224  RRM3_CELF3_4_5_6
cd12635233-260  RRM2_CELF3_4_5_6
cd12274235-281  RRM2_NEFsp
cd12338234-284  RRM1_SRSF1_like
cd12471150-206  RRM1_MSSP2
cd12631234-281  RRM1_CELF1_2_Bruno
cd12545233-307  RRM_IN35
cd12595149-216  RRM1_SRSF5
cd12606234-259  RRM1_RBM4
cd12257245-293  RRM1_RBM26_like
cd12615235-281  RRM1_TIA1
cd12383234-306  RRM_RBM42
cd12338149-199  RRM1_SRSF1_like
cd12472144-206  RRM1_RBMS3
cd12444149-230  RRM1_CPEBs
cd12241235-283  RRM_SF3B14
cd12367243-282  RRM2_RBM45
cd12310150-200  RRM3_Spen
cd12631149-199  RRM1_CELF1_2_Bruno
cd12489234-305  RRM2_hnRNPQ
smart00360149-219  RRM
smart00360234-307  RRM
TIGR01622121-292  SF-CC1
TIGR01628111-292  PABP-1234
COG0724120-265  RRM
PLN03134149-218  PLN03134
TIGR01628150-292  PABP-1234
pfam14259235-293  RRM_6
COG0724134-315  RRM
pfam14259151-216  RRM_6
TIGR01645149-281  half-pint
TIGR01628158-312  PABP-1234
PLN03134234-284  PLN03134
TIGR01642110-292  U2AF_lg
TIGR01659155-301  sex-lethal
TIGR01661235-285  ELAV_HUD_SF
TIGR01645234-313  half-pint
TIGR01661160-304  ELAV_HUD_SF
TIGR01645149-206  half-pint
TIGR01661230-293  ELAV_HUD_SF
PLN03120235-283  PLN03120
TIGR01661141-196  ELAV_HUD_SF


Ontology Information


   
HPRD ID581
Molecular ClassTranscription regulatory protein
Molecular FunctionHydrolase activity (GO:0016787)
Biological ProcessMetabolism (GO:0008152); Energy pathways (GO:0006091)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO