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General Information
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 20089989    | 2010 | Cell line : - Source : VU University Medical Center, Amsterdam, The Netherlands. Sample Type : CRC tumor and normal tissue No. of Sample : - Stage : - | Biochemical isolation to nano-LC-MS/MS analysis | Up-regulation | - | This genes are differenitially expressed between colorectal adenoma and Colorectal cancer tissue. |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | CD molecules, Integrins, Fibronectin type III domain containing |
| Description | Integrins are heterodimers comprised of alpha and beta subunits, that are noncovalently associated transmembrane glycoprotein receptors. Different combinations of alpha and beta polypeptides form complexes that vary in their ligand-binding specificities. Integrins mediate cell-matrix or cell-cell adhesion, and transduced signals that regulate gene expression and cell growth. This gene encodes the integrin beta 4 subunit, a receptor for the laminins. This subunit tends to associate with alpha 6 subunit and is likely to play a pivotal role in the biology of invasive carcinoma. Mutations in this gene are associated with epidermolysis bullosa with pyloric atresia. Multiple alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]   | Chromosome | 17 |
| Location | 17q25 |
| Start | 75721342   |
| End | 75757819   |
| Strand | +   |
| Gene Sequence |    Download   Select all |
| Length | 36478   |
| OMIM ID | 147557    |
| HGNC ID | HGNC:6158    |
| Unigene ID | Hs.632226     |
| Ensembl ID | ENSG00000132470    |
| PharmGKB ID | -    |
mRNA Information
| mRNA ID | XM_005257311.3 |
|---|---|
| Exon | join(1..271,3353..3441,5854..5936,6063..6164,6310..6514, 7036..7132,7924..8095,8900..9163,9534..9623,9905..10027, 10471..10632,10822..10898,12149..12351,14710..14813, 14947..15045,15224..15353,15981..16103,16197..16303, 18331..18364,18539..18730,19017..19120,19452..19510, 19641..19664,21000..21148,21241..21420,22372..22520, 27500..27704,28770..28927,29339..29519,29633..29770, 30833..31015,31105..31236,32424..32633,33235..33474, 33714..33872,34360..34509,35088..35276,35363..35518, 35602..35766,35859..35969,36075..36478)   | mRNA Sequence |    Download   Select all |
| Length | 5925   |
CDS Information
| Location | join(1087..1181,3353..3441,5854..5936,6063..6164, 6310..6514,7036..7132,7924..8095,8900..9163,9534..9623, 9905..10027,10471..10632,10822..10898,12149..12351, 14710..14813,14947..15045,15224..15353,15981..16103, 16197..16303,18331..18364,18539..18730,19017..19120, 19452..19510,19641..19664,21000..21148,21241..21420, 22372..22520,27500..27704,28770..28927,29339..29519, |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | - |    
Protein Information
| Protein ID | XP_005257366.1 |
|---|---|
| Protein Name | Integrin, beta 4 |
| Molecular Wt. (Da) | 207749 |
| Protein Sequence |    Download   Select all |
| Length | 1875   |
| Uniprot ID | P21926 |    
| Ensembl Protein ID | ENSP00000009180   |    
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| Y | Phosphorylation | 1207;- |
| Y | Phosphorylation | 1207;- |
| Y | Phosphorylation | 1207;- |
| Y | Phosphorylation | 1207;- |
| Y | Phosphorylation | 1207;- |
| Y | Phosphorylation | 1207;- |
| Y | Phosphorylation | 1469;- |
| Y | Phosphorylation | 1399;- |
| Y | Phosphorylation | 1399;- |
| S | Phosphorylation | 1474;- |
| S | Phosphorylation | 1404;- |
| S | Phosphorylation | 1404;- |
| Y | Phosphorylation | 1510 |
| Y | Phosphorylation | 1440 |
| S | Phosphorylation | 1084 |
| S | Phosphorylation | 1084 |
| S | Phosphorylation | 1084 |
| T | Phosphorylation | 1471 |
| T | Phosphorylation | 1401 |
| T | Phosphorylation | 1401 |
| T | Phosphorylation | 1530 |
| T | Phosphorylation | 1513 |
| T | Phosphorylation | 1460 |
| Y | Phosphorylation | 1188 |
| Y | Phosphorylation | 1188 |
| Y | Phosphorylation | 1188 |
| Y | Phosphorylation | 1198 |
| Y | Phosphorylation | 1198 |
| Y | Phosphorylation | 1198 |
| Y | Phosphorylation | 1206 |
| Y | Phosphorylation | 1206 |
| Y | Phosphorylation | 1206 |
| Y | Phosphorylation | 1509 |
| Y | Phosphorylation | 1439 |
| S | Phosphorylation | 179 |
| S | Phosphorylation | 179 |
| S | Phosphorylation | 179 |
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING)      View   
| Interactant Gene ID (Source: HPRD) | Gene Symbol | HPRD ID | Ref Seq ID | Technique | References |
|---|---|---|---|---|---|
| 667 |    DST |    222 |    NP_001138241.1 |    in vivo;yeast 2-hybrid |    1   063   730   814   668   470    |
| 1179 |    CLCA1 |    4880 |    NP_001276.2 |    in vitro;in vivo |    1   451   241   912   110   680    |
| 1308 |    COL17A1 |    223 |    NP_000485.3 |    in vivo;yeast 2-hybrid |    966   088   014   668   477    |
| 2885 |    GRB2 |    150 |    NP_002077.1 |    in vivo |    9171350    |
| 3655 |    ITGA6 |    945 |    NP_001073286.1 |    in vivo |    9660880    |
| 4233 |    MET |    1280 |    NP_001120972.1 |    in vivo |    1   173   306   314   602   070    |
| 5578 |    PRKCA |    1498 |    NP_002728.1 |    in vitro |    104   777   661   512   185   000   000   000    |
| 5747 |    PTK2 |    2859 |    NP_005598.3 |    in vitro |    12110680    |
| 6310 |    ATXN1 |    3333 |    NP_000323.2 |    yeast 2-hybrid |    16713569    |
| 7431 |    VIM |    1899 |    NP_003371.2 |    in vivo |    12441134    |
| 7525 |    YES1 |    1285 |    NP_005424.1 |    in vivo |    11684709    |
| 7529 |    YWHAB |    3184 |    NP_003395.1 |    in vitro;yeast 2-hybrid |    12919677    |
| 9635 |    CLCA2 |    4923 |    NP_006527.1 |    in vitro;in vivo |    1   451   241   912   110   680    |
Pathway Information
| Pathway Name | Pathway ID |
|---|---|
| Arrhythmogenic right ventricular cardiomyopathy (ARVC) |    hsa05412 |    
| Dilated cardiomyopathy |    hsa05414 |    
| ECM-receptor interaction |    hsa04512 |    
| Focal adhesion |    hsa04510 |    
| Hypertrophic cardiomyopathy (HCM) |    hsa05410 |    
| PI3K-Akt signaling pathway |    hsa04151 |    
| Regulation of actin cytoskeleton |    hsa04810 |    
Structure Information
| PDB ID | 1QCT |
|---|---|
| Resolution | 2.7 |
| Method | X-RAY DIFFRACTION |
| Chains | A   |
| Molecule | DNA (5'-D(*DTP*DTP*DGP*DGP*DAP*DAP*DAP*DAP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DCP*DAP*DTP*DAP*DG)-3')   |
| Model | View |
Domain Information
| ID | Location | Description |
|---|---|---|
| cd00063 | 1528-1609  | FN3 |
| cl21522 | 1528-1609  | FN3 superfamily |
| cd00063 | 1641-1726  | FN3 |
| cl21522 | 1641-1726  | FN3 superfamily |
| cd00063 | 1220-1313  | FN3 |
| cl21522 | 1220-1313  | FN3 superfamily |
| cd00063 | 1128-1215  | FN3 |
| cl21522 | 1128-1215  | FN3 superfamily |
| smart00187 | 37-453  | INB |
| cl00057 | 37-453  | vWFA superfamily |
| pfam00362 | 37-453  | Integrin_beta |
| pfam03160 | 990-1084  | Calx-beta |
| cl02522 | 990-1084  | Calx-beta superfamily |
| smart00237 | 991-1084  | Calx_beta |
| pfam00041 | 1529-1611  | fn3 |
| pfam07965 | 626-711  | Integrin_B_tail |
| cl06832 | 626-711  | Integrin_B_tail superfamily |
| pfam00041 | 1642-1727  | fn3 |
| pfam00041 | 1128-1208  | fn3 |
| smart00060 | 1528-1609  | FN3 |
| smart00060 | 1641-1725  | FN3 |
| pfam00041 | 1221-1309  | fn3 |
| smart00060 | 1128-1205  | FN3 |
| smart00060 | 1220-1307  | FN3 |
| pfam07974 | 547-573  | EGF_2 |
| cl21504 | 547-573  | EGF_CA superfamily |
| TIGR00845 | 992-1106  | caca |
| TIGR00845 | 978-1087  | caca |
Ontology Information
| HPRD ID | 202 |    
|---|---|
| Molecular Class | Adhesion molecule |
| Molecular Function | Receptor activity (GO:0004872) |
| Biological Process | Cell communication (GO:0007154); Signal transduction (GO:0007165)   |
Drug Information
No matching records could be found.
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    
