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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
ITGB4 3691 Integrin, beta 4  17CD104 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
20089989   2010Cell line : -

Source : VU University Medical Center, Amsterdam, The Netherlands.

Sample Type : CRC tumor and normal tissue

No. of Sample : -

Stage : -

Biochemical isolation to nano-LC-MS/MS analysis Up-regulation-This genes are differenitially expressed between colorectal adenoma and Colorectal cancer tissue.


Gene Details



Chromosome: 17; NC_000017.10 (73717516..73753899)

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Gene Type protein coding
Gene Family CD molecules, Integrins, Fibronectin type III domain containing
Description Integrins are heterodimers comprised of alpha and beta subunits, that are noncovalently associated transmembrane glycoprotein receptors. Different combinations of alpha and beta polypeptides form complexes that vary in their ligand-binding specificities. Integrins mediate cell-matrix or cell-cell adhesion, and transduced signals that regulate gene expression and cell growth. This gene encodes the integrin beta 4 subunit, a receptor for the laminins. This subunit tends to associate with alpha 6 subunit and is likely to play a pivotal role in the biology of invasive carcinoma. Mutations in this gene are associated with epidermolysis bullosa with pyloric atresia. Multiple alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]  
Chromosome 17
Location 17q25
Start 75721342  
End 75757819  
Strand +  
Gene Sequence

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Length 36478  
OMIM ID 147557   
HGNC ID HGNC:6158   
Unigene ID Hs.632226    
Ensembl ID ENSG00000132470   
PharmGKB ID -   

mRNA Information


mRNA ID XM_005257311.3
Exon join(1..271,3353..3441,5854..5936,6063..6164,6310..6514, 7036..7132,7924..8095,8900..9163,9534..9623,9905..10027, 10471..10632,10822..10898,12149..12351,14710..14813, 14947..15045,15224..15353,15981..16103,16197..16303, 18331..18364,18539..18730,19017..19120,19452..19510, 19641..19664,21000..21148,21241..21420,22372..22520, 27500..27704,28770..28927,29339..29519,29633..29770, 30833..31015,31105..31236,32424..32633,33235..33474, 33714..33872,34360..34509,35088..35276,35363..35518, 35602..35766,35859..35969,36075..36478)  
mRNA Sequence

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Length 5925  



CDS Information


   
Location join(1087..1181,3353..3441,5854..5936,6063..6164, 6310..6514,7036..7132,7924..8095,8900..9163,9534..9623, 9905..10027,10471..10632,10822..10898,12149..12351, 14710..14813,14947..15045,15224..15353,15981..16103, 16197..16303,18331..18364,18539..18730,19017..19120, 19452..19510,19641..19664,21000..21148,21241..21420, 22372..22520,27500..27704,28770..28927,29339..29519,
CDS Sequence

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CCDS ID -



Protein Information


      
Protein IDXP_005257366.1
Protein NameIntegrin, beta 4
Molecular Wt. (Da)207749
Protein Sequence

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Length 1875  
Uniprot IDP21926
Ensembl Protein ID ENSP00000009180  



Post-translational Modification Information (Source : HPRD)


Residue Type site
YPhosphorylation1207;-
YPhosphorylation1207;-
YPhosphorylation1207;-
YPhosphorylation1207;-
YPhosphorylation1207;-
YPhosphorylation1207;-
YPhosphorylation1469;-
YPhosphorylation1399;-
YPhosphorylation1399;-
SPhosphorylation1474;-
SPhosphorylation1404;-
SPhosphorylation1404;-
YPhosphorylation1510
YPhosphorylation1440
SPhosphorylation1084
SPhosphorylation1084
SPhosphorylation1084
TPhosphorylation1471
TPhosphorylation1401
TPhosphorylation1401
TPhosphorylation1530
TPhosphorylation1513
TPhosphorylation1460
YPhosphorylation1188
YPhosphorylation1188
YPhosphorylation1188
YPhosphorylation1198
YPhosphorylation1198
YPhosphorylation1198
YPhosphorylation1206
YPhosphorylation1206
YPhosphorylation1206
YPhosphorylation1509
YPhosphorylation1439
SPhosphorylation179
SPhosphorylation179
SPhosphorylation179

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                                                                                                   
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
667DST222NP_001138241.1in vivo;yeast 2-hybrid1   063   730   814   668   470   
1179CLCA14880NP_001276.2in vitro;in vivo1   451   241   912   110   680   
1308COL17A1223NP_000485.3in vivo;yeast 2-hybrid966   088   014   668   477   
2885GRB2150NP_002077.1in vivo9171350   
3655ITGA6945NP_001073286.1in vivo9660880   
4233MET1280NP_001120972.1in vivo1   173   306   314   602   070   
5578PRKCA1498NP_002728.1in vitro104   777   661   512   185   000   000   000   
5747PTK22859NP_005598.3in vitro12110680   
6310ATXN13333NP_000323.2yeast 2-hybrid16713569   
7431VIM1899NP_003371.2in vivo12441134   
7525YES11285NP_005424.1in vivo11684709   
7529YWHAB3184NP_003395.1in vitro;yeast 2-hybrid12919677   
9635CLCA24923NP_006527.1in vitro;in vivo1   451   241   912   110   680   


Pathway Information


                                          
Pathway Name Pathway ID
Arrhythmogenic right ventricular cardiomyopathy (ARVC) hsa05412
Dilated cardiomyopathy hsa05414
ECM-receptor interaction hsa04512
Focal adhesion hsa04510
Hypertrophic cardiomyopathy (HCM) hsa05410
PI3K-Akt signaling pathway hsa04151
Regulation of actin cytoskeleton hsa04810


Structure Information


PDB ID1QCT
Resolution2.7
MethodX-RAY DIFFRACTION
Chains A  
Molecule DNA (5'-D(*DTP*DTP*DGP*DGP*DAP*DAP*DAP*DAP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DCP*DAP*DTP*DAP*DG)-3')  
Model View



Domain Information




ID Location Description
cd000631528-1609  FN3
cl215221528-1609  FN3 superfamily
cd000631641-1726  FN3
cl215221641-1726  FN3 superfamily
cd000631220-1313  FN3
cl215221220-1313  FN3 superfamily
cd000631128-1215  FN3
cl215221128-1215  FN3 superfamily
smart0018737-453  INB
cl0005737-453  vWFA superfamily
pfam0036237-453  Integrin_beta
pfam03160990-1084  Calx-beta
cl02522990-1084  Calx-beta superfamily
smart00237991-1084  Calx_beta
pfam000411529-1611  fn3
pfam07965626-711  Integrin_B_tail
cl06832626-711  Integrin_B_tail superfamily
pfam000411642-1727  fn3
pfam000411128-1208  fn3
smart000601528-1609  FN3
smart000601641-1725  FN3
pfam000411221-1309  fn3
smart000601128-1205  FN3
smart000601220-1307  FN3
pfam07974547-573  EGF_2
cl21504547-573  EGF_CA superfamily
TIGR00845992-1106  caca
TIGR00845978-1087  caca


Ontology Information


   
HPRD ID202
Molecular ClassAdhesion molecule
Molecular FunctionReceptor activity (GO:0004872)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO