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General Information
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 20089989    | 2010 | Cell line : - Source : VU University Medical Center, Amsterdam, The Netherlands. Sample Type : - No. of Sample : - Stage : - | Biochemical isolation to nano-LC-MS/MS analysis and using spectral counting combined with statistics | Down-regulation | - | This genes are differenitially expressed between colorectal adenoma and Colorectal cancer tissue. CRC tissue was collected at the VU University Medical Center, Amsterdam, The Netherlands. |
| 21863385    | 2012 | Cell line : - Source : - Sample Type : Serum sample No. of Sample : 118 pre-operative serum samples, 66 post-operative and 96 healthy controls Stage : - | Sandwich ELISA, DNA sequencing | Up-regulation | - | Serum Nup88 might be a candidate for a new biomarker implicated in the development and aggressiveness of CRCs. the level of pre-operative serum Nup88 was significantly higher than that of post-operative Nup88 (P = 0.021). |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | - |
| Description | The nuclear pore complex is a massive structure that extends across the nuclear envelope, forming a gateway that regulates the flow of macromolecules between the nucleus and the cytoplasm. Nucleoporins, a family of 50 to 100 proteins, are the main components of the nuclear pore complex in eukaryotic cells. The protein encoded by this gene belongs to the nucleoporin family and is associated with the oncogenic nucleoporin CAN/Nup214 in a dynamic subcomplex. This protein is also overexpressed in a large number of malignant neoplasms and precancerous dysplasias. [provided by RefSeq, Jul 2008]   | Chromosome | 17 |
| Location | 17p13.2 |
| Start | 5386026   |
| End | 5419739   |
| Strand | -   |
| Gene Sequence |    Download   Select all |
| Length | 33714   |
| OMIM ID | 602552    |
| HGNC ID | HGNC:8067    |
| Unigene ID | Hs.584784     |
| Ensembl ID | ENSG00000108559    |
| PharmGKB ID | -    |
mRNA Information
| mRNA ID | NM_004703.5 |
|---|---|
| Exon | complement(<33400..>33714)   | mRNA Sequence |    Download   Select all |
| Length | 2518   |
CDS Information
| Location | join(90..386,3058..3227,5606..5731,8951..9037, 10831..11007,14497..14683,15494..15641,20090..20188, 24759..24849,28078..28179,30780..30938,31836..31961, 32070..32135,32274..32354,32630..32756,32914..33032, 33471..33534) |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | CCDS11070.1 |    
Protein Information
| Protein ID | NP_002523.2 |
|---|---|
| Protein Name | Nucleoporin 88kDa |
| Molecular Wt. (Da) | 83411 |
| Protein Sequence |    Download   Select all |
| Length | 741   |
| Uniprot ID | P51679 |    
| Ensembl Protein ID | ENSP00000332659   |    
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| S | Phosphorylation | 517;- |
| S | Phosphorylation | 96;- |
| S | Phosphorylation | 35 |
| S | Phosphorylation | 45 |
| S | Phosphorylation | 50 |
| S | Phosphorylation | 46 |
| S | Phosphorylation | 49 |
| T | Phosphorylation | 57 |
| S | Phosphorylation | 168 |
| S | Phosphorylation | 170 |
| T | Phosphorylation | 525 |
| S | Phosphorylation | 540 |
| S | Phosphorylation | 442 |
| S | Phosphorylation | 646 |
| S | Phosphorylation | 167 |
| T | Phosphorylation | 37 |
| T | Phosphorylation | 169 |
| T | Phosphorylation | 166 |
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING)      View   
| Interactant Gene ID (Source: HPRD) | Gene Symbol | HPRD ID | Ref Seq ID | Technique | References |
|---|---|---|---|---|---|
| 4928 |    NUP98 |    3012 |    NP_057404.2 |    in vitro;in vivo |    12589057    |
| 8021 |    NUP214 |    258 |    NP_005076.3 |    in vitro |    9488438    |
Pathway Information
| Pathway Name | Pathway ID |
|---|---|
| RNA transport |    hsa03013 |    
Structure Information
No matching records could be found.
Domain Information
| ID | Location | Description |
|---|---|---|
| cd07596 | 583-682  | BAR_SNX |
| cl12013 | 583-682  | BAR superfamily |
| pfam10168 | 11-741  | Nup88 |
| TIGR02169 | 559-740  | SMC_prok_A |
| COG4913 | 510-741  | COG4913 |
| pfam05483 | 546-731  | SCP-1 |
| COG1196 | 559-740  | Smc |
| TIGR02169 | 573-666  | SMC_prok_A |
| pfam09789 | 573-692  | DUF2353 |
| COG1196 | 570-727  | Smc |
| COG0711 | 573-724  | AtpF |
| pfam07767 | 550-675  | Nop53 |
| TIGR02168 | 562-695  | SMC_prok_B |
| TIGR03319 | 571-737  | RNase_Y |
| TIGR02168 | 562-687  | SMC_prok_B |
| PRK12704 | 583-732  | PRK12704 |
| TIGR02169 | 613-736  | SMC_prok_A |
| COG1196 | 574-741  | Smc |
| COG0419 | 559-740  | SbcC |
| TIGR02168 | 509-681  | SMC_prok_B |
Ontology Information
| HPRD ID | 3065 |    
|---|---|
| Molecular Class | Transport/cargo protein |
| Molecular Function | Transporter activity (GO:0005215) |
| Biological Process | Transport (GO:0006810)   |
Drug Information
No matching records could be found.
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    
