Search results:


General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
NUP88 4927 Nucleoporin 88kDa  17- 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
20089989   2010Cell line : -

Source : VU University Medical Center, Amsterdam, The Netherlands.

Sample Type : -

No. of Sample : -

Stage : -

Biochemical isolation to nano-LC-MS/MS analysis and using spectral counting combined with statisticsDown-regulation-This genes are differenitially expressed between colorectal adenoma and Colorectal cancer tissue.

CRC tissue was collected at the VU University Medical Center, Amsterdam, The Netherlands.

21863385   2012Cell line : -

Source : -

Sample Type : Serum sample

No. of Sample : 118 pre-operative serum samples, 66 post-operative and 96 healthy controls

Stage : -

Sandwich ELISA, DNA sequencingUp-regulation-Serum Nup88 might be a candidate for a new biomarker implicated in the development and aggressiveness of CRCs.

the level of pre-operative serum Nup88 was significantly higher than that of post-operative Nup88 (P = 0.021).


Gene Details



Chromosome: 17; NC_000017.10 (5289346..5323059, complement)

View Larger Image
   
Gene Type protein coding
Gene Family -
Description The nuclear pore complex is a massive structure that extends across the nuclear envelope, forming a gateway that regulates the flow of macromolecules between the nucleus and the cytoplasm. Nucleoporins, a family of 50 to 100 proteins, are the main components of the nuclear pore complex in eukaryotic cells. The protein encoded by this gene belongs to the nucleoporin family and is associated with the oncogenic nucleoporin CAN/Nup214 in a dynamic subcomplex. This protein is also overexpressed in a large number of malignant neoplasms and precancerous dysplasias. [provided by RefSeq, Jul 2008]  
Chromosome 17
Location 17p13.2
Start 5386026  
End 5419739  
Strand -  
Gene Sequence

   Download   Select all

Length 33714  
OMIM ID 602552   
HGNC ID HGNC:8067   
Unigene ID Hs.584784    
Ensembl ID ENSG00000108559   
PharmGKB ID -   

mRNA Information


mRNA ID NM_004703.5
Exon complement(<33400..>33714)  
mRNA Sequence

   Download   Select all

Length 2518  



CDS Information


   
Location join(90..386,3058..3227,5606..5731,8951..9037, 10831..11007,14497..14683,15494..15641,20090..20188, 24759..24849,28078..28179,30780..30938,31836..31961, 32070..32135,32274..32354,32630..32756,32914..33032, 33471..33534)
CDS Sequence

   Download   Select all

CCDS ID CCDS11070.1



Protein Information


      
Protein IDNP_002523.2
Protein NameNucleoporin 88kDa
Molecular Wt. (Da)83411
Protein Sequence

   Download   Select all

Length 741  
Uniprot IDP51679
Ensembl Protein ID ENSP00000332659  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation517;-
SPhosphorylation96;-
SPhosphorylation35
SPhosphorylation45
SPhosphorylation50
SPhosphorylation46
SPhosphorylation49
TPhosphorylation57
SPhosphorylation168
SPhosphorylation170
TPhosphorylation525
SPhosphorylation540
SPhosphorylation442
SPhosphorylation646
SPhosphorylation167
TPhosphorylation37
TPhosphorylation169
TPhosphorylation166

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                              
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
4928NUP983012NP_057404.2in vitro;in vivo12589057   
8021NUP214258NP_005076.3in vitro9488438   


Pathway Information


      
Pathway Name Pathway ID
RNA transport hsa03013


Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd07596583-682  BAR_SNX
cl12013583-682  BAR superfamily
pfam1016811-741  Nup88
TIGR02169559-740  SMC_prok_A
COG4913510-741  COG4913
pfam05483546-731  SCP-1
COG1196559-740  Smc
TIGR02169573-666  SMC_prok_A
pfam09789573-692  DUF2353
COG1196570-727  Smc
COG0711573-724  AtpF
pfam07767550-675  Nop53
TIGR02168562-695  SMC_prok_B
TIGR03319571-737  RNase_Y
TIGR02168562-687  SMC_prok_B
PRK12704583-732  PRK12704
TIGR02169613-736  SMC_prok_A
COG1196574-741  Smc
COG0419559-740  SbcC
TIGR02168509-681  SMC_prok_B


Ontology Information


   
HPRD ID3065
Molecular ClassTransport/cargo protein
Molecular FunctionTransporter activity (GO:0005215)
Biological ProcessTransport (GO:0006810)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO