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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
PRDM2 7799 PR domain containing 2, with ZNF domain  1RIZ; KMT8; RIZ1; RIZ2; MTB-ZF; HUMHOXY1 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
22997602   2012Cell line : -

Source : -

Sample Type : -

No. of Sample : -

Stage : -

-Mutation-Mutation due to inactivation of DNA mismatch repair system results MSI


Gene Details



Chromosome: 1; NC_000001.10 (14026735..14151574)

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Gene Type protein coding
Gene Family Chromatin-modifying enzymes / K-methyltransferases
Description This tumor suppressor gene is a member of a nuclear histone/protein methyltransferase superfamily. It encodes a zinc finger protein that can bind to retinoblastoma protein, estrogen receptor, and the TPA-responsive element (MTE) of the heme-oxygenase-1 gene. Although the functions of this protein have not been fully characterized, it may (1) play a role in transcriptional regulation during neuronal differentiation and pathogenesis of retinoblastoma, (2) act as a transcriptional activator of the heme-oxygenase-1 gene, and (3) be a specific effector of estrogen action. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2008]  
Chromosome 1
Location 1p36.21
Start 13700240  
End 13825079  
Strand +  
Gene Sequence

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Length 124840  
OMIM ID 601196   
HGNC ID HGNC:9347   
Unigene ID Hs.371823    
Ensembl ID ENSG00000116731   
PharmGKB ID PA33715   

mRNA Information


mRNA ID NM_001135610.1
Exon join(1..61,15302..15375,30761..30878,32540..32643, 41766..41918,49122..49248,116188..116331,122920..124840)  
mRNA Sequence

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Length 2715  



CDS Information


   
Locationjoin(15367..15375,30761..30878,32540..32643,41766..41918, 49122..49248,116188..116331,122920..122945)
CDS Sequence

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CCDS ID CCDS44061.1



Protein Information


      
Protein IDNP_001007258.1
Protein NamePR domain containing 2, with ZNF domain
Molecular Wt. (Da)161977
Protein Sequence

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Length 1481  
Uniprot IDQ92997
Ensembl Protein ID ENSP00000316054  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation643
SPhosphorylation643
SPhosphorylation442
TPhosphorylation641;-
TPhosphorylation641;-
TPhosphorylation440;-
SPhosphorylation738;-
SPhosphorylation747;-
SPhosphorylation738;-
SPhosphorylation747;-
SPhosphorylation537;-
SPhosphorylation546;-
SPhosphorylation739;-
SPhosphorylation739;-
SPhosphorylation538;-
SPhosphorylation743;-
SPhosphorylation743;-
SPhosphorylation542;-
TPhosphorylation1255
SPhosphorylation1266
TPhosphorylation1255
SPhosphorylation1266
TPhosphorylation1054
SPhosphorylation1065
TPhosphorylation737
TPhosphorylation737
TPhosphorylation536

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                             
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
2099ESR1589NP_000116.2in vivo;yeast 2-hybrid10706618   
5925RB11574NP_000312.2in vitro;in vivo7538672   
8290HIST3H34156NP_003484.1in vitro14633678   


Pathway Information


No matching records could be found.

Structure Information


No matching records could be found.

Domain Information




ID Location Description
smart0031728-147  SET
cl0256628-147  SET superfamily
pfam0085643-141  SET
pfam13894360-382  zf-C2H2_4
cl20498360-382  zf-C2H2_4 superfamily


Ontology Information


   
HPRD ID2806
Molecular ClassUnknown
Molecular FunctionTranscription factor activity (GO:0003700)
Biological ProcessRegulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism (GO:0019219)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO