Search results:
General Information
| Gene_Symbol | Gene_ID | Gene_Name | Chromosome | Alias |
|---|---|---|---|---|
| PRDM2 | 7799 | PR domain containing 2, with ZNF domain  | 1 | RIZ; KMT8; RIZ1; RIZ2; MTB-ZF; HUMHOXY1  |
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 22997602    | 2012 | Cell line : - Source : - Sample Type : - No. of Sample : - Stage : - | - | Mutation | - | Mutation due to inactivation of DNA mismatch repair system results MSI |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | Chromatin-modifying enzymes / K-methyltransferases |
| Description | This tumor suppressor gene is a member of a nuclear histone/protein methyltransferase superfamily. It encodes a zinc finger protein that can bind to retinoblastoma protein, estrogen receptor, and the TPA-responsive element (MTE) of the heme-oxygenase-1 gene. Although the functions of this protein have not been fully characterized, it may (1) play a role in transcriptional regulation during neuronal differentiation and pathogenesis of retinoblastoma, (2) act as a transcriptional activator of the heme-oxygenase-1 gene, and (3) be a specific effector of estrogen action. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2008]   | Chromosome | 1 |
| Location | 1p36.21 |
| Start | 13700240   |
| End | 13825079   |
| Strand | +   |
| Gene Sequence |    Download   Select all |
| Length | 124840   |
| OMIM ID | 601196    |
| HGNC ID | HGNC:9347    |
| Unigene ID | Hs.371823     |
| Ensembl ID | ENSG00000116731    |
| PharmGKB ID | PA33715    |
mRNA Information
| mRNA ID | NM_001135610.1 |
|---|---|
| Exon | join(1..61,15302..15375,30761..30878,32540..32643, 41766..41918,49122..49248,116188..116331,122920..124840)   | mRNA Sequence |    Download   Select all |
| Length | 2715   |
CDS Information
| Location | join(15367..15375,30761..30878,32540..32643,41766..41918, 49122..49248,116188..116331,122920..122945) |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | CCDS44061.1 |    
Protein Information
| Protein ID | NP_001007258.1 |
|---|---|
| Protein Name | PR domain containing 2, with ZNF domain |
| Molecular Wt. (Da) | 161977 |
| Protein Sequence |    Download   Select all |
| Length | 1481   |
| Uniprot ID | Q92997 |    
| Ensembl Protein ID | ENSP00000316054   |    
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| S | Phosphorylation | 643 |
| S | Phosphorylation | 643 |
| S | Phosphorylation | 442 |
| T | Phosphorylation | 641;- |
| T | Phosphorylation | 641;- |
| T | Phosphorylation | 440;- |
| S | Phosphorylation | 738;- |
| S | Phosphorylation | 747;- |
| S | Phosphorylation | 738;- |
| S | Phosphorylation | 747;- |
| S | Phosphorylation | 537;- |
| S | Phosphorylation | 546;- |
| S | Phosphorylation | 739;- |
| S | Phosphorylation | 739;- |
| S | Phosphorylation | 538;- |
| S | Phosphorylation | 743;- |
| S | Phosphorylation | 743;- |
| S | Phosphorylation | 542;- |
| T | Phosphorylation | 1255 |
| S | Phosphorylation | 1266 |
| T | Phosphorylation | 1255 |
| S | Phosphorylation | 1266 |
| T | Phosphorylation | 1054 |
| S | Phosphorylation | 1065 |
| T | Phosphorylation | 737 |
| T | Phosphorylation | 737 |
| T | Phosphorylation | 536 |
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING)      View   
| Interactant Gene ID (Source: HPRD) | Gene Symbol | HPRD ID | Ref Seq ID | Technique | References |
|---|---|---|---|---|---|
| 2099 |    ESR1 |    589 |    NP_000116.2 |    in vivo;yeast 2-hybrid |    10706618    |
| 5925 |    RB1 |    1574 |    NP_000312.2 |    in vitro;in vivo |    7538672    |
| 8290 |    HIST3H3 |    4156 |    NP_003484.1 |    in vitro |    14633678    |
Pathway Information
No matching records could be found.
Structure Information
No matching records could be found.
Domain Information
| ID | Location | Description |
|---|---|---|
| smart00317 | 28-147  | SET |
| cl02566 | 28-147  | SET superfamily |
| pfam00856 | 43-141  | SET |
| pfam13894 | 360-382  | zf-C2H2_4 |
| cl20498 | 360-382  | zf-C2H2_4 superfamily |
Ontology Information
| HPRD ID | 2806 |    
|---|---|
| Molecular Class | Unknown |
| Molecular Function | Transcription factor activity (GO:0003700) |
| Biological Process | Regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism (GO:0019219)   |
Drug Information
No matching records could be found.
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    
