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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
PROM1 8842 prominin 1  4AC133, CD133, RP41, CORD12 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
25015560   2014Cell line : -

Source : Puerta del Mar Hospital, Cdiz; Puerto Real Hospital, Cdiz; and San Cecilio Hospital, Granada

Sample Type : CRC tumor and normal tissue

No. of Sample : 123 paraffin-embedded colorectal adenocarcinoma samples

Stage : -

Mthylation-specific PCR and immunohistochemistryUp-regulation-CD133 expression may be a predictive biomarker of DFS.

MGMT and CD133 may both be useful for determining the prognosis of colorectal cancer patients and to identify those requiring more aggressive adjuvant therapies.

21764578   2012Cell line : -

Source : First Hospital of Jilin Medical University

Sample Type : CRC tumor and normal tissue

No. of Sample : 120 CRC patients

Stage : -

Real Time RT-PCR,Immunofluorescent microscopy Up-regulation-CD133 and CD44 proteins were highly co-expressed in colorectal cancer with early liver metastases, and may be a potential biomarker for the early liver metastases.

CD133 and CD44 were significantly higher co-expressed in colorectal cancer with early liver metastases compared to those without early liver metastases, and the content of CD133 and CD44 proteins decreased following growth of the transplanted tumors.


Gene Details



Chromosome 4 - NC_000004.12(15968226..16119884, complement)

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Gene Type protein coding
Gene Family CD molecules
Description This gene encodes a pentaspan transmembrane glycoprotein. The protein localizes to membrane protrusions and is often expressed on adult stem cells, where it is thought to function in maintaining stem cell properties by suppressing differentiation. Mutations in this gene have been shown to result in retinitis pigmentosa and Stargardt disease. Expression of this gene is also associated with several types of cancer. This gene is expressed from at least five alternative promoters that are expressed in a tissue-dependent manner. Multiple transcript variants encoding different isoforms have been found for this gene.  
Chromosome 4
Location 4p15
Start 15968226  
End 16119884  
Strand -  
Gene Sequence

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Length 151659  
OMIM ID 604365   
HGNC ID HGNC:9454   
Unigene ID Hs.614734   
Ensembl ID ENSG00000007062   
PharmGKB ID -   

mRNA Information


mRNA ID NM_001145848.1
Exon join(35885..35907,43767..44198,80884..80939,86376..86581, 94573..94693,95527..95590,96470..96559,101345..101562, 103645..103719,106547..106610,110777..110936, 113195..113347,119266..119389,121397..121500, 125814..125898,127494..127637,128592..128663, 130061..130153,132169..132222,133848..133928, 134057..134125,135530..135622,139348..139463, 139981..140004,140422..140490,148803..148842, 150517..151659)  
mRNA Sequence

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Length 4257  



CDS Information


   
Location join(43979..44198,80884..80939,86376..86581,94573..94693, 95527..95590,96470..96559,101345..101562,103645..103719, 106547..106610,110777..110936,113195..113347, 119266..119389,121397..121500,125814..125898, 127494..127637,128592..128663,130061..130153, 132169..132222,133848..133928,134057..134125, 135530..135622,139348..139463,148803..148818)
CDS Sequence

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CCDS ID -



Protein Information


      
Protein IDNP_001139319.1
Protein Nameprominin 1
Molecular Wt. (Da)94361
Protein Sequence

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Length 856  
Uniprot IDQ9NQS7
Ensembl Protein ID ENSP00000278849  



Post-translational Modification Information (Source : HPRD)


Residue Type site
TPhosphorylation266;-
SPhosphorylation275;-
TPhosphorylation276;-
KAcetylation138

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

No matching records from HPRD source could be found.

Pathway Information


      
Pathway Name Pathway ID
Transcriptional misregulation in cancer hsa05202


Structure Information


No matching records could be found.

Domain Information




ID Location Description
pfam0547816-830  Prominin
COG1511195-419  YhgE


Ontology Information


   
HPRD ID3337
Molecular ClassIntegral membrane protein
Molecular FunctionProtein binding (GO:0005515)
Biological ProcessRegulation of cell growth (GO:0001558)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO