Search results:
General Information
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 20230186    | 2010 | Cell line : - Source : Jiangsu Institute of Cancer Research Sample Type : - No. of Sample : 19 primary tumors of CRC. Stage : TNM Stage I-III | real time RT-PCR, Flow cytometry | Down-regulation | - | PTCH1 might be a potential biomarker that could discriminate CRC with high from that with low metastatic risk. tumor tissues in the high-risk group for metastasis expressed lower levels of PTCH1 mRNA than did those in the low-risk group. |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | |
| Description | This gene encodes a member of the patched gene family. The encoded protein is the receptor for sonic hedgehog, a secreted molecule implicated in the formation of embryonic structures and in tumorigenesis, as well as the desert hedgehog and indian hedgehog proteins. This gene functions as a tumor suppressor. Mutations of this gene have been associated with basal cell nevus syndrome, esophageal squamous cell carcinoma, trichoepitheliomas, transitional cell carcinomas of the bladder, as well as holoprosencephaly. Alternative splicing results in multiple transcript variants encoding different isoforms. Additional splice variants have been described, but their full length sequences and biological validity cannot be determined currently.   | Chromosome | 9 |
| Location | 9q22.1-q31 |
| Start | 95442982   |
| End | 95516965   |
| Strand | -   |
| Gene Sequence |    Download   Select all |
| Length | 73984   |
| OMIM ID | 601309    |
| HGNC ID | HGNC:9585    |
| Unigene ID | Hs.494538    |
| Ensembl ID | ENSG00000185920    |
| PharmGKB ID | -    |
mRNA Information
| mRNA ID | NM_001083603.1 |
|---|---|
| Exon | join(1..343,10367..10559,31092..31281,34763..34832, 34926..35017,36378..36576,36876..36997,37819..37966, 38780..38911,39264..39419,40109..40207,40807..40932, 47035..47153,47813..48215,49541..49850,54968..55110, 57183..57366,58673..58953,60553..60690,63346..63488, 67026..67125,67643..67897,69515..70055,70575..73984)   | mRNA Sequence |    Download   Select all |
| Length | 7957   |
CDS Information
| Location | join(146..343,10367..10559,31092..31281,34763..34832, 34926..35017,36378..36576,36876..36997,37819..37966, 38780..38911,39264..39419,40109..40207,40807..40932, 47035..47153,47813..48215,49541..49850,54968..55110, 57183..57366,58673..58953,60553..60690,63346..63488, 67026..67125,67643..67897,69515..70054) |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | CCDS47995.1 |    
Protein Information
| Protein ID | NP_000255.2 |
|---|---|
| Protein Name | patched 1 |
| Molecular Wt. (Da) | 160414 |
| Protein Sequence |    Download   Select all |
| Length | 1447   |
| Uniprot ID | P04196 |    
| Ensembl Protein ID | ENSP00000232003   |    
Post-translational Modification Information (Source : HPRD)
No matching records could be found.
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING)      View   
| Interactant Gene ID (Source: HPRD) | Gene Symbol | HPRD ID | Ref Seq ID | Technique | References |
|---|---|---|---|---|---|
| 891 |    CCNB1 |    454 |    NP_114172.1 |    in vivo |    9926943    |
| 3549 |    IHH |    2839 |    NP_002172.2 |    in vivo |    9811851    |
| 6469 |    SHH |    2838 |    NP_000184.1 |    in vivo |    9811851    |
Pathway Information
| Pathway Name | Pathway ID |
|---|---|
| Basal cell carcinoma |    hsa05217 |    
| cAMP signaling pathway |    hsa04024 |    
| Hedgehog signaling pathway |    hsa04340 |    
| Pathways in cancer |    hsa05200 |    
| Proteoglycans in cancer |    hsa05205 |    
Structure Information
No matching records could be found.
Domain Information
| ID | Location | Description |
|---|---|---|
| pfam12349 | 462-616  | Sterol-sensing |
| cl21543 | 462-616  | MMPL superfamily |
| pfam03176 | 467-598  | MMPL |
| pfam07698 | 1025-1161  | 7TM-7TMR_HD |
| cl22453 | 1025-1161  | 7TM-7TMR_HD superfamily |
| TIGR00918 | 43-1206  | 2A060602 |
| TIGR00917 | 398-1179  | 2A060601 |
| pfam02460 | 384-1180  | Patched |
| COG1033 | 469-606  | COG1033 |
| COG1033 | 400-597  | COG1033 |
| COG1033 | 1034-1158  | COG1033 |
| TIGR00921 | 429-612  | 2A067 |
| TIGR00921 | 469-596  | 2A067 |
| COG1033 | 1030-1161  | COG1033 |
| COG0841 | 1030-1158  | AcrB |
| TIGR00921 | 1041-1151  | 2A067 |
| COG2409 | 467-598  | YdfJ |
| PHA03377 | 1253-1369  | PHA03377 |
| TIGR03480 | 401-596  | HpnN |
| COG4258 | 431-594  | COG4258 |
| TIGR00833 | 406-598  | actII |
| TIGR00921 | 1036-1161  | 2A067 |
| TIGR00833 | 1027-1155  | actII |
| pfam09770 | 1228-1428  | PAT1 |
| PHA03307 | 1229-1363  | PHA03307 |
| TIGR00833 | 469-602  | actII |
Ontology Information
| HPRD ID | 6784 |    
|---|---|
| Molecular Class | Cell surface receptor |
| Molecular Function | Chaperone activity (GO:0003754) |
| Biological Process | Protein metabolism (GO:0019538)   |
Drug Information
No matching records could be found.
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    
