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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
PTCH1 5727 patched 1  9BCNS 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
20230186   2010Cell line : -

Source : Jiangsu Institute of Cancer Research

Sample Type : -

No. of Sample : 19 primary tumors of CRC.

Stage : TNM Stage I-III

real time RT-PCR, Flow cytometryDown-regulation-PTCH1 might be a potential biomarker that could discriminate CRC with high from that with low metastatic risk.

tumor tissues in the high-risk group for metastasis expressed lower levels of PTCH1 mRNA than did those in the low-risk group.


Gene Details



Chromosome 9 - NC_000009.12 (95442982..95516965, complement)

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Gene Type protein coding
Gene Family
Description This gene encodes a member of the patched gene family. The encoded protein is the receptor for sonic hedgehog, a secreted molecule implicated in the formation of embryonic structures and in tumorigenesis, as well as the desert hedgehog and indian hedgehog proteins. This gene functions as a tumor suppressor. Mutations of this gene have been associated with basal cell nevus syndrome, esophageal squamous cell carcinoma, trichoepitheliomas, transitional cell carcinomas of the bladder, as well as holoprosencephaly. Alternative splicing results in multiple transcript variants encoding different isoforms. Additional splice variants have been described, but their full length sequences and biological validity cannot be determined currently.  
Chromosome 9
Location 9q22.1-q31
Start 95442982  
End 95516965  
Strand -  
Gene Sequence

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Length 73984  
OMIM ID 601309   
HGNC ID HGNC:9585   
Unigene ID Hs.494538   
Ensembl ID ENSG00000185920   
PharmGKB ID -   

mRNA Information


mRNA ID NM_001083603.1
Exon join(1..343,10367..10559,31092..31281,34763..34832, 34926..35017,36378..36576,36876..36997,37819..37966, 38780..38911,39264..39419,40109..40207,40807..40932, 47035..47153,47813..48215,49541..49850,54968..55110, 57183..57366,58673..58953,60553..60690,63346..63488, 67026..67125,67643..67897,69515..70055,70575..73984)  
mRNA Sequence

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Length 7957  



CDS Information


   
Location join(146..343,10367..10559,31092..31281,34763..34832, 34926..35017,36378..36576,36876..36997,37819..37966, 38780..38911,39264..39419,40109..40207,40807..40932, 47035..47153,47813..48215,49541..49850,54968..55110, 57183..57366,58673..58953,60553..60690,63346..63488, 67026..67125,67643..67897,69515..70054)
CDS Sequence

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CCDS ID CCDS47995.1



Protein Information


      
Protein IDNP_000255.2
Protein Namepatched 1
Molecular Wt. (Da)160414
Protein Sequence

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Length 1447  
Uniprot IDP04196
Ensembl Protein ID ENSP00000232003  



Post-translational Modification Information (Source : HPRD)


No matching records could be found.

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                             
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
891CCNB1454NP_114172.1in vivo9926943   
3549IHH2839NP_002172.2in vivo9811851   
6469SHH2838NP_000184.1in vivo9811851   


Pathway Information


                              
Pathway Name Pathway ID
Basal cell carcinoma hsa05217
cAMP signaling pathway hsa04024
Hedgehog signaling pathway hsa04340
Pathways in cancer hsa05200
Proteoglycans in cancer hsa05205


Structure Information


No matching records could be found.

Domain Information




ID Location Description
pfam12349462-616  Sterol-sensing
cl21543462-616  MMPL superfamily
pfam03176467-598  MMPL
pfam076981025-1161  7TM-7TMR_HD
cl224531025-1161  7TM-7TMR_HD superfamily
TIGR0091843-1206  2A060602
TIGR00917398-1179  2A060601
pfam02460384-1180  Patched
COG1033469-606  COG1033
COG1033400-597  COG1033
COG10331034-1158  COG1033
TIGR00921429-612  2A067
TIGR00921469-596  2A067
COG10331030-1161  COG1033
COG08411030-1158  AcrB
TIGR009211041-1151  2A067
COG2409467-598  YdfJ
PHA033771253-1369  PHA03377
TIGR03480401-596  HpnN
COG4258431-594  COG4258
TIGR00833406-598  actII
TIGR009211036-1161  2A067
TIGR008331027-1155  actII
pfam097701228-1428  PAT1
PHA033071229-1363  PHA03307
TIGR00833469-602  actII


Ontology Information


   
HPRD ID6784
Molecular ClassCell surface receptor
Molecular FunctionChaperone activity (GO:0003754)
Biological ProcessProtein metabolism (GO:0019538)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO