Search results:
General Information
| Gene_Symbol | Gene_ID | Gene_Name | Chromosome | Alias |
|---|---|---|---|---|
| SEL1L | 6400 | sel-1 suppressor of lin-12-like (C. elegans)  | 14 | IBD2, SEL1L1  |
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 22350780    | 2012 | Cell line : - Source : Howard University Hospital, Washington DC, USA, and Multimedica Hospital, Milan, Italy Sample Type : - No. of Sample : 134 adenomas, 59 (55 moderately to well differentiated and 4 poorly differentiated) carcinomas and 57 matched adjacent normal tissue obtained from African Americans and 32 (19 adenomas, 13 adenocarcinoma) from the Italian group. Stage : - | Western blot, tissue microarray, Immunohistochemistry, Immunoelectron Microscopy | Up-regulation | - | SEL1L expression is a potential CRC tissue biomarker since its expression is significantly higher in adenoma cells with respect to normal mucosa. |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | |
| Description | The protein encoded by this gene is part of a protein complex required for the retrotranslocation or dislocation of misfolded proteins from the endoplasmic reticulum lumen to the cytosol, where they are degraded by the proteasome in a ubiquitin-dependent manner. Alternatively spliced transcript variants encoding different isoforms have been found for this gene.   | Chromosome | 14 |
| Location | 14q31 |
| Start | 81471547   |
| End | 81533861   |
| Strand | -   |
| Gene Sequence |    Download   Select all |
| Length | 62315   |
| OMIM ID | 602329    |
| HGNC ID | HGNC:10717    |
| Unigene ID | Hs.181300    |
| Ensembl ID | ENSG00000071537    |
| PharmGKB ID | -    |
mRNA Information
| mRNA ID | NM_005065.5 |
|---|---|
| Exon | join(1..187,6124..6161,6898..7129,27621..27788, 29556..29661,30979..31141,34200..34253,34344..34403, 35368..35449,35816..35970,38725..38781,41314..41382, 43397..43474,44548..44610,45920..46007,46324..46472, 47408..47573,48116..48190,49465..49637,54122..54250, 56681..62315   | mRNA Sequence |    Download   Select all |
| Length | 1675   |
CDS Information
| Location | join(118..187,6124..6161,6898..7129,27684..27788, 29556..29661,30979..31141,34200..34253,34344..34403, 35368..35449,35816..35970,38725..38781,41314..41382, 43397..43474,44548..44610,45920..46007,46324..46472, 47408..47573,48116..48190,49465..49637,54122..54250, 56681..56890) |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | - |    
Protein Information
| Protein ID | NP_001231913.1 |
|---|---|
| Protein Name | sel-1 suppressor of lin-12-like (C. elegans) |
| Molecular Wt. (Da) | 31335 |
| Protein Sequence |    Download   Select all |
| Length | 301   |
| Uniprot ID | Q02363 |    
| Ensembl Protein ID | ENSP00000234091   |    
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| N | Glycosylation | 272 |
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING)      View   
No matching records from HPRD source could be found.
Pathway Information
| Pathway Name | Pathway ID |
|---|---|
| Protein processing in endoplasmic reticulum |    hsa04141 |    
Structure Information
No matching records could be found.
Domain Information
| ID | Location | Description |
|---|---|---|
| cd00062 | 121-168  | FN2 |
| cl09951 | 121-168  | FN2 superfamily |
| smart00059 | 120-168  | FN2 |
| pfam00040 | 127-168  | fn2 |
| smart00671 | 483-518  | SEL1 |
| cl02723 | 483-518  | Sel1 superfamily |
| smart00671 | 447-481  | SEL1 |
| cl02723 | 447-481  | Sel1 superfamily |
| smart00671 | 664-696  | SEL1 |
| cl02723 | 664-696  | Sel1 superfamily |
| pfam08238 | 447-481  | Sel1 |
| pfam08238 | 483-518  | Sel1 |
| smart00671 | 410-446  | SEL1 |
| cl02723 | 410-446  | Sel1 superfamily |
| smart00671 | 373-409  | SEL1 |
| cl02723 | 373-409  | Sel1 superfamily |
| smart00671 | 629-662  | SEL1 |
| cl02723 | 629-662  | Sel1 superfamily |
| pfam08238 | 664-697  | Sel1 |
| pfam08238 | 373-409  | Sel1 |
| smart00671 | 523-553  | SEL1 |
| cl02723 | 523-553  | Sel1 superfamily |
| pfam08238 | 410-446  | Sel1 |
| smart00671 | 255-290  | SEL1 |
| cl02723 | 255-290  | Sel1 superfamily |
| COG0790 | 186-453  | TPR |
| COG0790 | 412-696  | TPR |
| COG0790 | 183-307  | TPR |
| pfam12968 | 397-479  | DUF3856 |
Ontology Information
| HPRD ID | 984 |    
|---|---|
| Molecular Class | Integral membrane protein |
| Molecular Function | Catalytic activity (GO:0003824) |
| Biological Process | Metabolism (GO:0008152); Energy pathways (GO:0006091)   |
Drug Information
No matching records could be found.
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    
