Search results:


General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
SEL1L 6400 sel-1 suppressor of lin-12-like (C. elegans)  14IBD2, SEL1L1 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
22350780   2012Cell line : -

Source : Howard University Hospital, Washington DC, USA, and Multimedica Hospital, Milan, Italy

Sample Type : -

No. of Sample : 134 adenomas, 59 (55 moderately to well differentiated and 4 poorly differentiated) carcinomas and 57 matched adjacent normal tissue obtained from African Americans and 32 (19 adenomas, 13 adenocarcinoma) from the Italian group.

Stage : -

Western blot, tissue microarray, Immunohistochemistry, Immunoelectron MicroscopyUp-regulation-SEL1L expression is a potential CRC tissue biomarker since its expression is significantly higher in adenoma cells with respect to normal mucosa.


Gene Details



Chromosome 14 - NC_000014.9 (81471547..81533861, complement)

View Larger Image
   
Gene Type protein coding
Gene Family
Description The protein encoded by this gene is part of a protein complex required for the retrotranslocation or dislocation of misfolded proteins from the endoplasmic reticulum lumen to the cytosol, where they are degraded by the proteasome in a ubiquitin-dependent manner. Alternatively spliced transcript variants encoding different isoforms have been found for this gene.  
Chromosome 14
Location 14q31
Start 81471547  
End 81533861  
Strand -  
Gene Sequence

   Download   Select all

Length 62315  
OMIM ID 602329   
HGNC ID HGNC:10717   
Unigene ID Hs.181300   
Ensembl ID ENSG00000071537   
PharmGKB ID -   

mRNA Information


mRNA ID NM_005065.5
Exon join(1..187,6124..6161,6898..7129,27621..27788, 29556..29661,30979..31141,34200..34253,34344..34403, 35368..35449,35816..35970,38725..38781,41314..41382, 43397..43474,44548..44610,45920..46007,46324..46472, 47408..47573,48116..48190,49465..49637,54122..54250, 56681..62315  
mRNA Sequence

   Download   Select all

Length 1675  



CDS Information


   
Location join(118..187,6124..6161,6898..7129,27684..27788, 29556..29661,30979..31141,34200..34253,34344..34403, 35368..35449,35816..35970,38725..38781,41314..41382, 43397..43474,44548..44610,45920..46007,46324..46472, 47408..47573,48116..48190,49465..49637,54122..54250, 56681..56890)
CDS Sequence

   Download   Select all

CCDS ID -



Protein Information


      
Protein IDNP_001231913.1
Protein Namesel-1 suppressor of lin-12-like (C. elegans)
Molecular Wt. (Da)31335
Protein Sequence

   Download   Select all

Length 301  
Uniprot IDQ02363
Ensembl Protein ID ENSP00000234091  



Post-translational Modification Information (Source : HPRD)


Residue Type site
NGlycosylation272

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

No matching records from HPRD source could be found.

Pathway Information


      
Pathway Name Pathway ID
Protein processing in endoplasmic reticulum hsa04141


Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd00062121-168  FN2
cl09951121-168  FN2 superfamily
smart00059120-168  FN2
pfam00040127-168  fn2
smart00671483-518  SEL1
cl02723483-518  Sel1 superfamily
smart00671447-481  SEL1
cl02723447-481  Sel1 superfamily
smart00671664-696  SEL1
cl02723664-696  Sel1 superfamily
pfam08238447-481  Sel1
pfam08238483-518  Sel1
smart00671410-446  SEL1
cl02723410-446  Sel1 superfamily
smart00671373-409  SEL1
cl02723373-409  Sel1 superfamily
smart00671629-662  SEL1
cl02723629-662  Sel1 superfamily
pfam08238664-697  Sel1
pfam08238373-409  Sel1
smart00671523-553  SEL1
cl02723523-553  Sel1 superfamily
pfam08238410-446  Sel1
smart00671255-290  SEL1
cl02723255-290  Sel1 superfamily
COG0790186-453  TPR
COG0790412-696  TPR
COG0790183-307  TPR
pfam12968397-479  DUF3856


Ontology Information


   
HPRD ID984
Molecular ClassIntegral membrane protein
Molecular FunctionCatalytic activity (GO:0003824)
Biological ProcessMetabolism (GO:0008152); Energy pathways (GO:0006091)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO