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General Information
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 21531130 | 2011 | Cell line : - Source : Czech Central European population Japan Sample Type : Case control study No. of Sample : 197 cases and 218 controls Stage : - | Peptide Nucleic Acid (PNA)-clamp real-time-PCR TaqMan assay, Gene expression profiles. | Up-regulation | - | 113 (55 male nad 23 female with average age 65 year)patients who underwent a surgical resection of the primary CRC were included in this study. |
Gene Details
| Gene Type | protein coding |
|---|---|
| Gene Family | Specificity protein transcription factors, Zinc fingers, C2H2-type |
| Description | - | Chromosome | 2 |
| Location | 2q31.1 |
| Start | 170714738 |
| End | 170717988 |
| Strand | + |
| Gene Sequence | Download Select all |
| Length | 3251 |
| OMIM ID | 609391 |
| HGNC ID | HGNC:14529 |
| Unigene ID | Hs.368802 |
| Ensembl ID | ENSG00000204335 |
| PharmGKB ID | - |
mRNA Information
| mRNA ID | XM_011511159.1 |
|---|---|
| Exon | join(1..1367,1522..3251) | mRNA Sequence | Download Select all |
| Length | 3097 |
CDS Information
| Location | join(776..826,1522..2667) |
|---|---|
| CDS Sequence | Download Select all |
| CCDS ID | CCDS33322.1 |
Protein Information
| Protein ID | NP_001003845.1 |
|---|---|
| Protein Name | Sp5 transcription factor |
| Molecular Wt. (Da) | 41833 |
| Protein Sequence | Download Select all |
| Length | 398 |
| Uniprot ID | P54826 |
| Ensembl Protein ID | ENSP00000298743 |
Post-translational Modification Information (Source : HPRD)
No matching records could be found.
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING) View
No matching records from HPRD source could be found.
Pathway Information
No matching records could be found.
Structure Information
No matching records could be found.
Domain Information
| ID | Location | Description |
|---|---|---|
| pfam13465 | 342-365 | zf-H2C2_2 |
| cl22375 | 342-365 | zf-H2C2_2 superfamily |
| pfam13465 | 312-339 | zf-H2C2_2 |
| cl22375 | 312-339 | zf-H2C2_2 superfamily |
| pfam00096 | 356-378 | zf-C2H2 |
| cl23491 | 356-378 | zf-C2H2 superfamily |
| pfam00096 | 326-350 | zf-C2H2 |
| cl23491 | 326-350 | zf-C2H2 superfamily |
| smart00355 | 356-378 | ZnF_C2H2 |
| cl18194 | 356-378 | ZnF_C2H2 superfamily |
| pfam13894 | 356-378 | zf-C2H2_4 |
| cl20498 | 356-378 | zf-C2H2_4 superfamily |
| COG4049 | 347-391 | COG4049 |
| cl20182 | 347-391 | COG4049 superfamily |
| smart00355 | 326-350 | ZnF_C2H2 |
| cl18194 | 326-350 | ZnF_C2H2 superfamily |
| COG5048 | 311-384 | COG5048 |
| COG5048 | 328-382 | COG5048 |
| PHA03247 | 46-223 | PHA03247 |
| COG5048 | 324-383 | COG5048 |
| COG5048 | 292-374 | COG5048 |
| COG5048 | 288-356 | COG5048 |
| PHA00733 | 325-378 | PHA00733 |
| PHA03247 | 21-222 | PHA03247 |
Ontology Information
| HPRD ID | 2681 |
|---|---|
| Molecular Class | Transcription factor |
| Molecular Function | GTPase activity (GO:0003924) |
| Biological Process | Cell communication (GO:0007154); Signal transduction (GO:0007165) |
Drug Information
No matching records could be found.