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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
TGFB1 7040 transforming growth factor, beta 1  19CED, TGFbeta 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
12174377   2002Cell line : -

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : 50 patients with colorectal cancer and 30 healthy volunteers

Stage : Biomarker

ELISA, immunohistochemistryUp-regulation-TGFbeta1 may be used as a possible biomarker.

Serum levels of TGFbeta1 in patients with colorectal cancer(40+/-18 microg.L(-1)) were significantly higher than those in the healthy control group(19+/-8 microg.L(-1)), P<0.05.

12046078   2002Cell line : -

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : 98 colorectal cancer

Stage : -

ImmunohistochemistryUp-regulation-TGF beta(1) might be associated with tumor progression by modulating the angiogenesis in colorectal cancer and TGF beta(1) may be used as a possible biomarker.


Gene Details



Chromosome 19 - NC_000019.10 (41330531..41353933, complement)

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Gene Type protein coding
Gene Family Endogenous ligands
Description This gene encodes a member of the transforming growth factor beta (TGFB) family of cytokines, which are multifunctional peptides that regulate proliferation, differentiation, adhesion, migration, and other functions in many cell types. Many cells have TGFB receptors, and the protein positively and negatively regulates many other growth factors. The secreted protein is cleaved into a latency-associated peptide (LAP) and a mature TGFB1 peptide, and is found in either a latent form composed of a TGFB1 homodimer, a LAP homodimer, and a latent TGFB1-binding protein, or in an active form composed of a TGFB1 homodimer. The mature peptide may also form heterodimers with other TGFB family members. This gene is frequently upregulated in tumor cells, and mutations in this gene result in Camurati-Engelmann disease.  
Chromosome 19
Location 19q13.1
Start 41330531  
End 41353933  
Strand -  
Gene Sequence

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Length 23403  
OMIM ID 190180   
HGNC ID HGNC:11766   
Unigene ID Hs.645227   
Ensembl ID ENSG00000105329   
PharmGKB ID -   

mRNA Information


mRNA ID NM_000660.5
Exon join(1..1244,5479..5639,9070..9187,11687..11764, 11904..12051,21653..21806,22724..23403)  
mRNA Sequence

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Length 2583  



CDS Information


   
Location join(890..1244,5479..5639,9070..9187,11687..11764, 11904..12051,21653..21806,22724..22882)
CDS Sequence

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CCDS ID CCDS33031.1



Protein Information


      
Protein IDNP_000651.3
Protein Nametransforming growth factor, beta 1
Molecular Wt. (Da)28491
Protein Sequence

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Length 390  
Uniprot IDP08833
Ensembl Protein ID ENSP00000275525  



Post-translational Modification Information (Source : HPRD)


Residue Type site
NGlycosylation82

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                                                                                    
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
650BMP2206NP_001191.1in vivo11456401   
651BMP3208NP_001192.2in vivo9434787   
1280COL2A1361NP_001835.3in vitro10085302   
1490CTGF412NP_001892.1in vivo10457363   
1634DCN501NP_001911.1in vitro;in vivo76   381   067   798   269   
2022ENG565NP_001108225.1in vitro;in vivo12015308   
2339FNTA607NP_002018.1yeast 2-hybrid8599089   
3694ITGB6947NP_000879.2in vivo10025398   
4313MMP2386NP_004521.1in vitro;in vivo10652271   
6348CCL31656NP_002974.1in vivo8568261   
6678SPARC1631NP_003109.1in vitro;in vivo15034927   
7057THBS11765NP_003237.2in vivo1550960   


Pathway Information


                                                                                                                                                                              
Pathway Name Pathway ID
AGE-RAGE signaling pathway in diabetic complications hsa04933
Amoebiasis hsa05146
Cell cycle hsa04110
Chagas disease (American trypanosomiasis) hsa05142
Chronic myeloid leukemia hsa05220
Colorectal cancer hsa05210
Cytokine-cytokine receptor interaction hsa04060
Dilated cardiomyopathy hsa05414
Endocytosis hsa04144
FoxO signaling pathway hsa04068
Hepatitis B hsa05161
Hippo signaling pathway hsa04390
HTLV-I infection hsa05166
Hypertrophic cardiomyopathy (HCM) hsa05410
Inflammatory bowel disease (IBD) hsa05321
Intestinal immune network for IgA production hsa04672
Leishmaniasis hsa05140
Malaria hsa05144
MAPK signaling pathway hsa04010
Non-alcoholic fatty liver disease (NAFLD) hsa04932
Osteoclast differentiation hsa04380
Pancreatic cancer hsa05212
Pathways in cancer hsa05200
Proteoglycans in cancer hsa05205
Renal cell carcinoma hsa05211
Rheumatoid arthritis hsa05323
TGF-beta signaling pathway hsa04350
Toxoplasmosis hsa05145
Tuberculosis hsa05152


Structure Information


PDB ID1KLA
Resolution
MethodSOLUTION NMR
Chains A, B  
Molecule TRANSFORMING GROWTH FACTOR-BETA 1  
Model View



Domain Information




ID Location Description
pfam00019290-390  TGF_beta
cl02510290-390  TGF_beta superfamily
pfam0068828-261  TGFb_propeptide
cl0292828-261  TGFb_propeptide superfamily
smart00204293-390  TGFB
PHA02913293-389  PHA02913


Ontology Information


   
HPRD ID4183
Molecular ClassLigand
Molecular FunctionCell adhesion molecule activity (GO:0005194)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165)  



SNP Information


View SNP Geneview Report   

Drug Information


Uniprot ID DrugBank ID Name Type
P01137DB00070HyaluronidaseBiotechDrug
P01137DB06205Hyaluronidase (Human Recombinant)BiotechDrug

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO