Search results:
General Information
| Gene_Symbol | Gene_ID | Gene_Name | Chromosome | Alias |
|---|---|---|---|---|
| TPM1 | 7168 | Tropomyosin 1 (alpha)  | 15 | CMH3; TMSA; CMD1Y; C15orf13; HTM-alpha  |
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 19678923    | 2009 | Cell line : - Source : Department for Surgery at Jesenice hospital. Sample Type : CRC tumor and normal tissue No. of Sample : 16 samples of colorectal adenocarcinoma (CRC) and corresponding normal tissue Stage : - | Microarray, RT-PCR, mutation detection | Down-regulation | - | Underexpression of the TPM1 gene in a case of CRCs without KRAS mutations, showing that TPM1 might serve as an alternative path of development of CRC. This downregulation could in some cases be mediated by deletion of the TPM1 gene. |
| 20812987    | 2010 | Cell line : - Source : Nanfang Hospital tumour tissue bank. Sample Type : - No. of Sample : 150 CRC patients Stage : - | 2-D Gel electrophoresis, and mass spectrometry,Western blotting , Immunohistochemistry | Up-regulation | - | This gene differentially expressed in between normal colorectal tissue and colorectal cancer tissue experiment done by 2-D Gel eclectrophotesis. |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | Tropomyosins |
| Description | This gene is a member of the tropomyosin family of highly conserved, widely distributed actin-binding proteins involved in the contractile system of striated and smooth muscles and the cytoskeleton of non-muscle cells. Tropomyosin is composed of two alpha-helical chains arranged as a coiled-coil. It is polymerized end to end along the two grooves of actin filaments and provides stability to the filaments. The encoded protein is one type of alpha helical chain that forms the predominant tropomyosin of striated muscle, where it also functions in association with the troponin complex to regulate the calcium-dependent interaction of actin and myosin during muscle contraction. In smooth muscle and non-muscle cells, alternatively spliced transcript variants encoding a range of isoforms have been described. Mutations in this gene are associated with type 3 familial hypertrophic cardiomyopathy. [provided by RefSeq, Jul 2008]   | Chromosome | 15 |
| Location | 15q22.1 |
| Start | 63042639   |
| End | 63071915   |
| Strand | -   |
| Gene Sequence |    Download   Select all |
| Length | 29277   |
| OMIM ID | 191010    |
| HGNC ID | HGNC:12010    |
| Unigene ID | Hs.133892     |
| Ensembl ID | ENSG00000140416    |
| PharmGKB ID | -    |
mRNA Information
| mRNA ID | NM_001018020.1 |
|---|---|
| Exon | join(1..305,1068..1193,14347..14480,16925..17042, 18231..18301,18560..18635,19577..19639,19938..20007, 28452..29277)   | mRNA Sequence |    Download   Select all |
| Length | 1797   |
CDS Information
| Location | join(192..305,1068..1193,1389..1514,14347..14480, 16925..17042,18231..18301,19075..19150,19577..19639, 19938..20007,28452..28534) |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | - |    
Protein Information
| Protein ID | XP_005254694.1 |
|---|---|
| Protein Name | Tropomyosin 1 (alpha) |
| Molecular Wt. (Da) | 37322 |
| Protein Sequence |    Download   Select all |
| Length | 326   |
| Uniprot ID | Q12882 |    
| Ensembl Protein ID | ENSP00000307107   |    
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| M | Acetylation | 1 |
| S | Phosphorylation | 283 |
| M | Acetylation | 1 |
| M | Acetylation | 1 |
| M | Acetylation | 1 |
| M | Acetylation | 1 |
| M | Acetylation | 1 |
| M | Acetylation | 1 |
| S | Phosphorylation | 252 |
| S | Phosphorylation | 252 |
| S | Phosphorylation | 252 |
| S | Phosphorylation | 252 |
| K | Acetylation | 112 |
| K | Acetylation | 112 |
| K | Acetylation | 112 |
| K | Acetylation | 112 |
| K | Acetylation | 112 |
| K | Acetylation | 76 |
| K | Acetylation | 112 |
| K | Acetylation | 213 |
| K | Acetylation | 213 |
| K | Acetylation | 213 |
| K | Acetylation | 12 |
| K | Acetylation | 12 |
| K | Acetylation | 12 |
| K | Acetylation | 12 |
| K | Acetylation | 12 |
| K | Acetylation | 12 |
| S | Phosphorylation | 229 |
| S | Phosphorylation | 229 |
| S | Phosphorylation | 229 |
| S | Phosphorylation | 51 |
Enzyme Information
No matching records could be found.
PPi Information
No STRING Network could be found.
| Interactant Gene ID (Source: HPRD) | Gene Symbol | HPRD ID | Ref Seq ID | Technique | References |
|---|---|---|---|---|---|
| 60 |    ACTB |    32 |    NP_001092.1 |    in vivo |    9108196    |
| 2035 |    EPB41 |    558 |    AAD42222.1 |    in vitro |    11071908    |
| 3725 |    JUN |    1302 |    NP_002219.1 |    in vivo;yeast 2-hybrid |    1631061    |
| 5311 |    PKD2 |    1437 |    NP_000288.1 |    in vitro;in vivo;yeast 2-hybrid |    12527301    |
| 6273 |    S100A2 |    1508 |    NP_005969.1 |    in vitro;in vivo |    9092943    |
| 79036 |    C19orf50 |    14526 |    NP_076974.1 |    yeast 2-hybrid |    16189514    |
Pathway Information
| Pathway Name | Pathway ID |
|---|---|
| Adrenergic signaling in cardiomyocytes |    hsa04261 |    
| Cardiac muscle contraction |    hsa04260 |    
| Dilated cardiomyopathy |    hsa05414 |    
| Hypertrophic cardiomyopathy (HCM) |    hsa05410 |    
| MicroRNAs in cancer |    hsa05206 |    
Structure Information
No matching records could be found.
Domain Information
| ID | Location | Description |
|---|---|---|
| pfam12718 | 7-153  | Tropomyosin_1 |
| cl22857 | 7-153  | Tropomyosin_1 superfamily |
| pfam00261 | 48-284  | Tropomyosin |
| TIGR02168 | 37-284  | SMC_prok_B |
| COG1196 | 21-275  | Smc |
| TIGR02168 | 11-260  | SMC_prok_B |
| COG1196 | 1-284  | Smc |
| TIGR02168 | 4-283  | SMC_prok_B |
| TIGR02169 | 34-276  | SMC_prok_A |
| TIGR02168 | 6-256  | SMC_prok_B |
| COG1196 | 3-262  | Smc |
| PRK02224 | 2-258  | PRK02224 |
| TIGR02168 | 18-260  | SMC_prok_B |
| TIGR02168 | 70-284  | SMC_prok_B |
| COG4372 | 43-258  | COG4372 |
| COG1196 | 1-259  | Smc |
| PRK05771 | 23-261  | PRK05771 |
| COG1196 | 1-240  | Smc |
| COG1269 | 6-278  | NtpI |
| TIGR02169 | 20-246  | SMC_prok_A |
| TIGR02169 | 2-284  | SMC_prok_A |
| TIGR02168 | 47-284  | SMC_prok_B |
| TIGR02168 | 1-239  | SMC_prok_B |
| COG1196 | 1-260  | Smc |
| TIGR02168 | 2-270  | SMC_prok_B |
| COG1196 | 20-275  | Smc |
| COG1196 | 26-280  | Smc |
| TIGR02169 | 1-260  | SMC_prok_A |
| COG1196 | 79-275  | Smc |
| TIGR02169 | 4-259  | SMC_prok_A |
| PTZ00121 | 5-258  | PTZ00121 |
| COG3206 | 18-223  | GumC |
| COG1196 | 89-275  | Smc |
| COG1269 | 13-284  | NtpI |
| PRK02224 | 52-260  | PRK02224 |
| TIGR02169 | 19-277  | SMC_prok_A |
| COG1196 | 4-218  | Smc |
| TIGR03007 | 21-223  | pepcterm_ChnLen |
| PRK10929 | 23-233  | PRK10929 |
| PTZ00121 | 6-269  | PTZ00121 |
| PTZ00121 | 5-269  | PTZ00121 |
| PTZ00121 | 14-226  | PTZ00121 |
| COG1196 | 54-277  | Smc |
| TIGR03319 | 15-165  | RNase_Y |
| pfam04156 | 23-133  | IncA |
| PTZ00121 | 1-277  | PTZ00121 |
| COG1196 | 2-201  | Smc |
| COG1566 | 11-117  | EmrA |
| TIGR00998 | 1-155  | 8a0101 |
| PRK02224 | 13-275  | PRK02224 |
| TIGR02169 | 2-200  | SMC_prok_A |
| PRK02224 | 15-213  | PRK02224 |
| COG4942 | 28-262  | EnvC |
| PTZ00121 | 2-259  | PTZ00121 |
| TIGR02680 | 18-197  | TIGR02680 |
| COG4372 | 23-216  | COG4372 |
| TIGR02169 | 82-274  | SMC_prok_A |
| PTZ00121 | 2-273  | PTZ00121 |
| PTZ00121 | 5-244  | PTZ00121 |
| PTZ00121 | 15-252  | PTZ00121 |
| COG4913 | 56-260  | COG4913 |
| COG0419 | 2-251  | SbcC |
| pfam12128 | 2-263  | DUF3584 |
| PRK04863 | 15-260  | mukB |
| TIGR02680 | 82-263  | TIGR02680 |
| PRK09039 | 46-199  | PRK09039 |
| TIGR02168 | 102-275  | SMC_prok_B |
| TIGR04320 | 2-100  | Surf_Exclu_PgrA |
| PTZ00121 | 2-258  | PTZ00121 |
| TIGR02168 | 1-184  | SMC_prok_B |
| TIGR04320 | 14-121  | Surf_Exclu_PgrA |
| TIGR00606 | 33-284  | rad50 |
| COG1196 | 83-280  | Smc |
| TIGR01845 | 16-112  | outer_NodT |
| pfam04111 | 43-144  | APG6 |
| pfam13166 | 33-260  | AAA_13 |
| PRK10929 | 73-264  | PRK10929 |
| PRK04863 | 27-152  | mukB |
| TIGR02169 | 59-276  | SMC_prok_A |
| pfam01496 | 35-260  | V_ATPase_I |
| pfam05262 | 58-219  | Borrelia_P83 |
| TIGR02169 | 14-259  | SMC_prok_A |
| pfam12128 | 21-275  | DUF3584 |
| PRK11448 | 144-239  | hsdR |
| pfam12128 | 2-284  | DUF3584 |
| COG0419 | 1-260  | SbcC |
| pfam12128 | 11-262  | DUF3584 |
| TIGR04211 | 14-142  | SH3_and_anchor |
| PRK00409 | 90-238  | PRK00409 |
| pfam09726 | 2-260  | Macoilin |
| PRK12704 | 29-171  | PRK12704 |
| PHA02562 | 10-234  | 46 |
| TIGR02169 | 2-149  | SMC_prok_A |
Ontology Information
| HPRD ID | 512 |    
|---|---|
| Molecular Class | Cytoskeletal associated protein |
| Molecular Function | Cell adhesion molecule activity (GO:0005194) |
| Biological Process | Cell growth and/or maintenance (GO:0008151)   |
Drug Information
No matching records could be found.
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    
