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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
TPM1 7168 Tropomyosin 1 (alpha)  15CMH3; TMSA; CMD1Y; C15orf13; HTM-alpha 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
19678923   2009Cell line : -

Source : Department for Surgery at Jesenice hospital.

Sample Type : CRC tumor and normal tissue

No. of Sample : 16 samples of colorectal adenocarcinoma (CRC) and corresponding normal tissue

Stage : -

Microarray, RT-PCR, mutation detectionDown-regulation-Underexpression of the TPM1 gene in a case of CRCs without KRAS mutations, showing that TPM1 might serve as an alternative path of development of CRC. This downregulation could in some cases be mediated by deletion of the TPM1 gene.

20812987   2010Cell line : -

Source : Nanfang Hospital tumour tissue bank.

Sample Type : -

No. of Sample : 150 CRC patients

Stage : -

2-D Gel electrophoresis, and mass spectrometry,Western blotting , ImmunohistochemistryUp-regulation-This gene differentially expressed in between normal colorectal tissue and colorectal cancer tissue experiment done by 2-D Gel eclectrophotesis.


Gene Details



Chromosome: 15; NC_000015.9 (63334838..63364114)

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Gene Type protein coding
Gene Family Tropomyosins
Description This gene is a member of the tropomyosin family of highly conserved, widely distributed actin-binding proteins involved in the contractile system of striated and smooth muscles and the cytoskeleton of non-muscle cells. Tropomyosin is composed of two alpha-helical chains arranged as a coiled-coil. It is polymerized end to end along the two grooves of actin filaments and provides stability to the filaments. The encoded protein is one type of alpha helical chain that forms the predominant tropomyosin of striated muscle, where it also functions in association with the troponin complex to regulate the calcium-dependent interaction of actin and myosin during muscle contraction. In smooth muscle and non-muscle cells, alternatively spliced transcript variants encoding a range of isoforms have been described. Mutations in this gene are associated with type 3 familial hypertrophic cardiomyopathy. [provided by RefSeq, Jul 2008]  
Chromosome 15
Location 15q22.1
Start 63042639  
End 63071915  
Strand -  
Gene Sequence

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Length 29277  
OMIM ID 191010   
HGNC ID HGNC:12010   
Unigene ID Hs.133892    
Ensembl ID ENSG00000140416   
PharmGKB ID -   

mRNA Information


mRNA ID NM_001018020.1
Exon join(1..305,1068..1193,14347..14480,16925..17042, 18231..18301,18560..18635,19577..19639,19938..20007, 28452..29277)  
mRNA Sequence

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Length 1797  



CDS Information


   
Location join(192..305,1068..1193,1389..1514,14347..14480, 16925..17042,18231..18301,19075..19150,19577..19639, 19938..20007,28452..28534)
CDS Sequence

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CCDS ID -



Protein Information


      
Protein IDXP_005254694.1
Protein NameTropomyosin 1 (alpha)
Molecular Wt. (Da)37322
Protein Sequence

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Length 326  
Uniprot IDQ12882
Ensembl Protein ID ENSP00000307107  



Post-translational Modification Information (Source : HPRD)


Residue Type site
MAcetylation1
SPhosphorylation283
MAcetylation1
MAcetylation1
MAcetylation1
MAcetylation1
MAcetylation1
MAcetylation1
SPhosphorylation252
SPhosphorylation252
SPhosphorylation252
SPhosphorylation252
KAcetylation112
KAcetylation112
KAcetylation112
KAcetylation112
KAcetylation112
KAcetylation76
KAcetylation112
KAcetylation213
KAcetylation213
KAcetylation213
KAcetylation12
KAcetylation12
KAcetylation12
KAcetylation12
KAcetylation12
KAcetylation12
SPhosphorylation229
SPhosphorylation229
SPhosphorylation229
SPhosphorylation51

Enzyme Information


No matching records could be found.

PPi Information


No STRING Network could be found.

                                                                                          
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
60ACTB32NP_001092.1in vivo9108196   
2035EPB41558AAD42222.1in vitro11071908   
3725JUN1302NP_002219.1in vivo;yeast 2-hybrid1631061   
5311PKD21437NP_000288.1in vitro;in vivo;yeast 2-hybrid12527301   
6273S100A21508NP_005969.1in vitro;in vivo9092943   
79036C19orf5014526NP_076974.1yeast 2-hybrid16189514   


Pathway Information


                              
Pathway Name Pathway ID
Adrenergic signaling in cardiomyocytes hsa04261
Cardiac muscle contraction hsa04260
Dilated cardiomyopathy hsa05414
Hypertrophic cardiomyopathy (HCM) hsa05410
MicroRNAs in cancer hsa05206


Structure Information


No matching records could be found.

Domain Information




ID Location Description
pfam127187-153  Tropomyosin_1
cl228577-153  Tropomyosin_1 superfamily
pfam0026148-284  Tropomyosin
TIGR0216837-284  SMC_prok_B
COG119621-275  Smc
TIGR0216811-260  SMC_prok_B
COG11961-284  Smc
TIGR021684-283  SMC_prok_B
TIGR0216934-276  SMC_prok_A
TIGR021686-256  SMC_prok_B
COG11963-262  Smc
PRK022242-258  PRK02224
TIGR0216818-260  SMC_prok_B
TIGR0216870-284  SMC_prok_B
COG437243-258  COG4372
COG11961-259  Smc
PRK0577123-261  PRK05771
COG11961-240  Smc
COG12696-278  NtpI
TIGR0216920-246  SMC_prok_A
TIGR021692-284  SMC_prok_A
TIGR0216847-284  SMC_prok_B
TIGR021681-239  SMC_prok_B
COG11961-260  Smc
TIGR021682-270  SMC_prok_B
COG119620-275  Smc
COG119626-280  Smc
TIGR021691-260  SMC_prok_A
COG119679-275  Smc
TIGR021694-259  SMC_prok_A
PTZ001215-258  PTZ00121
COG320618-223  GumC
COG119689-275  Smc
COG126913-284  NtpI
PRK0222452-260  PRK02224
TIGR0216919-277  SMC_prok_A
COG11964-218  Smc
TIGR0300721-223  pepcterm_ChnLen
PRK1092923-233  PRK10929
PTZ001216-269  PTZ00121
PTZ001215-269  PTZ00121
PTZ0012114-226  PTZ00121
COG119654-277  Smc
TIGR0331915-165  RNase_Y
pfam0415623-133  IncA
PTZ001211-277  PTZ00121
COG11962-201  Smc
COG156611-117  EmrA
TIGR009981-155  8a0101
PRK0222413-275  PRK02224
TIGR021692-200  SMC_prok_A
PRK0222415-213  PRK02224
COG494228-262  EnvC
PTZ001212-259  PTZ00121
TIGR0268018-197  TIGR02680
COG437223-216  COG4372
TIGR0216982-274  SMC_prok_A
PTZ001212-273  PTZ00121
PTZ001215-244  PTZ00121
PTZ0012115-252  PTZ00121
COG491356-260  COG4913
COG04192-251  SbcC
pfam121282-263  DUF3584
PRK0486315-260  mukB
TIGR0268082-263  TIGR02680
PRK0903946-199  PRK09039
TIGR02168102-275  SMC_prok_B
TIGR043202-100  Surf_Exclu_PgrA
PTZ001212-258  PTZ00121
TIGR021681-184  SMC_prok_B
TIGR0432014-121  Surf_Exclu_PgrA
TIGR0060633-284  rad50
COG119683-280  Smc
TIGR0184516-112  outer_NodT
pfam0411143-144  APG6
pfam1316633-260  AAA_13
PRK1092973-264  PRK10929
PRK0486327-152  mukB
TIGR0216959-276  SMC_prok_A
pfam0149635-260  V_ATPase_I
pfam0526258-219  Borrelia_P83
TIGR0216914-259  SMC_prok_A
pfam1212821-275  DUF3584
PRK11448144-239  hsdR
pfam121282-284  DUF3584
COG04191-260  SbcC
pfam1212811-262  DUF3584
TIGR0421114-142  SH3_and_anchor
PRK0040990-238  PRK00409
pfam097262-260  Macoilin
PRK1270429-171  PRK12704
PHA0256210-234  46
TIGR021692-149  SMC_prok_A


Ontology Information


   
HPRD ID512
Molecular ClassCytoskeletal associated protein
Molecular FunctionCell adhesion molecule activity (GO:0005194)
Biological ProcessCell growth and/or maintenance (GO:0008151)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO