Search results:
General Information
| Gene_Symbol | Gene_ID | Gene_Name | Chromosome | Alias |
|---|---|---|---|---|
| CHD1 | 1105 | chromodomain helicase DNA binding protein 1  | 5 | -  |
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 21447119    | 2011 | Cell line : - Source : - Sample Type : GC and CRC tumor and normal tissue No. of Sample : 28GC with high MSI (MSI-H), 45 GCs with low MSI (MSI-L)/stable MSI (MSS), 35 colorectal cancers (CRCs) with MSI-H and 45 CRCs with MSI-L/MSS. Stage : - | SSCP | Frameshift Mutation | - | - |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | - |
| Description | The CHD family of proteins is characterized by the presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template. [provided by RefSeq, Jul 2008]   |
| Chromosome | 5 |
| Location | 5q15-q21 |
| Start | 98189689   |
| End | 98264522   |
| Strand | -   |
| Gene Sequence |    Download   Select all |
| Length | 74834   |
| OMIM ID | 602118    |
| HGNC ID | HGNC:1915    |
| Unigene ID | Hs.643465    |
| Ensembl ID | ENSG00000153922    |
| PharmGKB ID | PA26451    |
mRNA Information
| mRNA ID | XM_011543112.1 |
|---|---|
| Exon | join(2..85,2090..2290,23526..23727,24716..24832, 25660..25724,27289..27438,27542..27813,28919..29144, 29860..29960,30190..30368,31304..31431,32182..32398, 33938..34027,35018..35208,35911..36099,39386..39548, 40384..40536,42975..43046,45387..45536,46501..46649, 47249..47345,47453..47548,48896..49072,52066..52226, 53511..53552,54901..55031,56069..56207,56423..56573, 57821..57937,58742..58870,59989..60129,65038..65216, 68556..68652,69609..69660,71899..73420)   | mRNA Sequence |    Download   Select all |
| Length | 6330   |
CDS Information
| Location | 233..4891 |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | CCDS34204.1 |    
Protein Information
| Protein ID | XP_011541414.1 |
|---|---|
| Protein Name | chromodomain helicase DNA binding protein 1 |
| Molecular Wt. (Da) | 177365 |
| Protein Sequence |    Download   Select all |
| Length | 1552   |
| Uniprot ID | P78549 |    
| Ensembl Protein ID | ENSP00000219066   |    
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| S | Phosphorylation | 1677;- |
| S | Phosphorylation | 1385;- |
| S | Phosphorylation | 1360;- |
| S | Phosphorylation | 1353;- |
| S | Phosphorylation | 1355;- |
| S | Phosphorylation | 1356;- |
| S | Phosphorylation | 90 |
| T | Phosphorylation | 237 |
| S | Phosphorylation | 241 |
| S | Phosphorylation | 1040 |
| S | Phosphorylation | 1096 |
| S | Phosphorylation | 1098 |
| S | Phosphorylation | 1100 |
| S | Phosphorylation | 1387 |
| S | Phosphorylation | 1396 |
| S | Phosphorylation | 1328 |
| S | Phosphorylation | 1384 |
| S | Phosphorylation | 1689 |
| S | Phosphorylation | 89 |
| S | Phosphorylation | 1699 |
| S | Phosphorylation | 1081 |
| S | Phosphorylation | 1622 |
| T | Phosphorylation | 1700 |
| S | Phosphorylation | 1671 |
| S | Phosphorylation | 1672 |
| T | Phosphorylation | 250 |
| S | Phosphorylation | 252 |
| S | Phosphorylation | 1102 |
| S | Phosphorylation | 92 |
| S | Phosphorylation | 215 |
| S | Phosphorylation | 216 |
| S | Phosphorylation | 398 |
| S | Phosphorylation | 1025 |
| Y | Phosphorylation | 1068 |
| S | Phosphorylation | 1085 |
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING)      View   
| Interactant Gene ID (Source: HPRD) | Gene Symbol | HPRD ID | Ref Seq ID | Technique | References |
|---|---|---|---|---|---|
| 3065 |    HDAC1 |    3143 |    NP_004955.2 |    in vivo |    12890497    |
| 9611 |    NCOR1 |    2911 |    NP_006302.2 |    in vitro;in vivo;yeast 2-hybrid |    12890497    |
Pathway Information
No matching records could be found.
Structure Information
No matching records could be found.
Domain Information
| ID | Location | Description |
|---|---|---|
| cd00079 | 802-910  | HELICc |
| cl21455 | 802-910  | P-loop_NTPase superfamily |
| cd00046 | 500-645  | DEXDc |
| cl21455 | 500-645  | P-loop_NTPase superfamily |
| cd00024 | 306-355  | CHROMO |
| cl17459 | 306-355  | CHROMO superfamily |
| cd00024 | 391-440  | CHROMO |
| cl17459 | 391-440  | CHROMO superfamily |
| pfam13907 | 1401-1500  | DUF4208 |
| cl16467 | 1401-1500  | DUF4208 superfamily |
| smart00490 | 818-902  | HELICc |
| pfam00271 | 822-902  | Helicase_C |
| pfam00385 | 389-443  | Chromo |
| smart00298 | 309-355  | CHROMO |
| smart00298 | 391-445  | CHROMO |
| pfam00385 | 309-355  | Chromo |
| PHA03420 | 1590-1680  | PHA03420 |
| cl14724 | 1590-1680  | PHA03420 superfamily |
| pfam00176 | 484-765  | SNF2_N |
| PLN03142 | 464-1000  | PLN03142 |
| COG0553 | 480-938  | HepA |
| smart00487 | 473-674  | DEXDc |
| COG1061 | 477-925  | SSL2 |
| COG0513 | 771-902  | SrmB |
| TIGR01642 | 1600-1709  | U2AF_lg |
| pfam11496 | 718-929  | HDA2-3 |
| TIGR01642 | 1589-1657  | U2AF_lg |
| TIGR03979 | 1628-1690  | His_Ser_Rich |
| TIGR01642 | 1555-1678  | U2AF_lg |
| TIGR01642 | 1552-1646  | U2AF_lg |
| COG1111 | 802-976  | MPH1 |
Ontology Information
| HPRD ID | 1870 |    
|---|---|
| Molecular Class | DNA binding protein |
| Molecular Function | Transmembrane receptor protein tyrosine kinase activity (GO:0004714) |
| Biological Process | Cell communication (GO:0007154)   |
Drug Information
| Uniprot ID | DrugBank ID | Name | Type |
|---|---|---|---|
| O14646 | DB00445 | Epirubicin | SmallMoleculeDrug |
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    
