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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
EFNB2 1948 Ephrin-B2  13HTKL; EPLG5; Htk-L; LERK5 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
16596216   2006Cell line : -

Source : -

Sample Type : -

No. of Sample : -

Stage : -

-Up-regulation-EFNB2 mRNA in human ES cells, neural tissues and colon cancer were expressed.


Gene Details



Chromosome: 13; NC_000013.10 (107142079..107187388, complement)

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Gene Type protein coding
Gene Family Ephrins
Description This gene encodes a member of the ephrin (EPH) family. The ephrins and EPH-related receptors comprise the largest subfamily of receptor protein-tyrosine kinases and have been implicated in mediating developmental events, especially in the nervous system and in erythropoiesis. Based on their structures and sequence relationships, ephrins are divided into the ephrin-A (EFNA) class, which are anchored to the membrane by a glycosylphosphatidylinositol linkage, and the ephrin-B (EFNB) class, which are transmembrane proteins. This gene encodes an EFNB class ephrin which binds to the EPHB4 and EPHA3 receptors. [provided by RefSeq, Jul 2008]  
Chromosome 13
Location 13q33
Start 106489731  
End 106535040  
Strand -  
Gene Sequence

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Length 45310  
OMIM ID 600527   
HGNC ID HGNC:3227   
Unigene ID Hs.149239    
Ensembl ID ENSG00000125266   
PharmGKB ID PA27662   

mRNA Information


mRNA ID NM_004093.3
Exon join(1..198,22229..22512,39201..39293,40047..40160, 41613..45310)  
mRNA Sequence

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Length 4404  



CDS Information


   
Location join(77..198,22229..22512,39201..39293,40047..40160, 41613..42001)
CDS Sequence

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CCDS ID CCDS9507.1



Protein Information


      
Protein IDNP_004084.1
Protein NameEphrin-B2
Molecular Wt. (Da)33782
Protein Sequence

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Length 333  
Uniprot IDQ07812
Ensembl Protein ID ENSP00000293288  



Post-translational Modification Information (Source : HPRD)


Residue Type site
YPhosphorylation304
YPhosphorylation330
SPhosphorylation325

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                                                                     
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
1742DLG44199NP_001356.1yeast 2-hybrid15458844   
2042EPHA31555NP_005224.2in vitro;in vivo8559144   
2050EPHB42481NP_004435.3in vivo120   517   769   718   367   
5175PECAM11425NP_000433.3in vivo16357318   
5663PSEN187NP_000012.1in vitro;in vivo16511561   
5998RGS33720NP_652759.3yeast 2-hybrid15458844   
6714SRC1819NP_005408.1in vitro8878483   
9456HOMER19211NP_004263.1in vitro;in vivo15745950   
9463PICK116176NP_036539.1yeast 2-hybrid15458844   
23024PDZRN315115NP_055824.1yeast 2-hybrid15458844   
23426GRIP119086NP_066973.2in vitro9883737   


Pathway Information


      
Pathway Name Pathway ID
Axon guidance hsa04360


Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd1042629-165  Ephrin-B_Ectodomain
cl1911529-165  Cupredoxin superfamily
pfam0081230-165  Ephrin
cd0267530-165  Ephrin_ectodomain
cd1042532-138  Ephrin-A_Ectodomain


Ontology Information


   
HPRD ID2498
Molecular ClassMembrane bound ligand
Molecular FunctionReceptor signaling complex scaffold activity (GO:0030159)
Biological ProcessApoptosis (GO:0006915)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO