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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
KPNB1 3837 Karyopherin (importin) beta 1  17IMB1; IPO1; IPOB; Impnb; NTF97 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
22968445   2012Cell line : -

Source : Department of Pathology of Wrocaw Medical University.

Sample Type : -

No. of Sample : -

Stage : -

Laser capture microdissection,FFPE-FASP,SAX fractionation,LC-MSMS,Label-free quantitation.Up-regulation--


Gene Details



Chromosome: 17; NC_000017.10 (45727275..45761004)

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Gene Type protein coding
Gene Family Importins, Armadillo repeat containing
Description Nucleocytoplasmic transport, a signal- and energy-dependent process, takes place through nuclear pore complexes embedded in the nuclear envelope. The import of proteins containing a nuclear localization signal (NLS) requires the NLS import receptor, a heterodimer of importin alpha and beta subunits also known as karyopherins. Importin alpha binds the NLS-containing cargo in the cytoplasm and importin beta docks the complex at the cytoplasmic side of the nuclear pore complex. In the presence of nucleoside triphosphates and the small GTP binding protein Ran, the complex moves into the nuclear pore complex and the importin subunits dissociate. Importin alpha enters the nucleoplasm with its passenger protein and importin beta remains at the pore. Interactions between importin beta and the FG repeats of nucleoporins are essential in translocation through the pore complex. The protein encoded by this gene is a member of the importin beta family. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2013]  
Chromosome 17
Location 17q21.32
Start 47649838  
End 47683638  
Strand +  
Gene Sequence

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Length 33801  
OMIM ID 602738   
HGNC ID HGNC:6400   
Unigene ID Hs.532793    
Ensembl ID ENSG00000108424   
PharmGKB ID -   

mRNA Information


mRNA ID NM_002265.5
Exon join(1..447,549..607,2857..3039,7023..7223,8671..8823, 11282..11341,13252..13341,14322..14432,15220..15321, 18349..18573,19841..20032,20865..20995,23181..23328, 23653..23724,24801..24945,26572..26654,27183..27290, 28209..28352,28471..28576,30183..30297,30671..30832, 32567..33801)  
mRNA Sequence

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Length 4276  



CDS Information


   
Locationjoin(408..447,549..607,2857..3039,7023..7223,8671..8823, 11282..11341,13252..13341,14322..14432,15220..15321, 18349..18573,19841..20032,20865..20995,23181..23328, 23653..23724,24801..24945,26572..26654,27183..27290, 28209..28352,28471..28576,30183..30297,30671..30832,32567)
CDS Sequence

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CCDS ID CCDS11513.1



Protein Information


      
Protein IDNP_001263382.1
Protein NameKaryopherin (importin) beta 1
Molecular Wt. (Da)81048
Protein Sequence

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Length 731  
Uniprot IDP10747
Ensembl Protein ID ENSP00000324890  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation12
KAcetylation867
KAcetylation835
KAcetylation211
SPhosphorylation853
TPhosphorylation855
TPhosphorylation5
TPhosphorylation10
SPhosphorylation170

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                                                                                                                                                                                             
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
862RUNX1T1590NP_783552.1in vitro10951564   
1434CSE1L3217NP_001307.2in vitro9323134   
1452CSNK1A12739NP_001020276.1in vitro12062430   
2260FGFR1634NP_000595.1in vivo11257130   
3005H1F0819NP_005309.1in vitro10228156   
3486IGFBP3899NP_001013416.1in vitro10811646   
3488IGFBP5901NP_000590.1in vitro10811646   
3838KPNA22818NP_002257.1in vitro;yeast 2-hybrid86   172   261   538   327   600   000   000   
3839KPNA33536NP_002258.2in vitro9435235   
4928NUP983012NP_057404.2in vitro91   441   899   275   187   
5744PTHLH1348NP_945316.1in vitro1   250   401   011   401   500   
5757PTMA1778NP_001092755.1in vitro11310559   
5764PTN1199NP_002816.1yeast 2-hybrid15383276   
5901RAN3109NP_006316.1in vitro91   351   328   576   188   100   000   000   000   000   
5903RANBP23111NP_006258.3in vitro;in vivo104   736   109   398   662   
6606SMN12646NP_000335.1in vitro;in vivo12095920   
6721SREBF22726NP_004590.2in vitro;in vivo10397761   
7013TERF12975NP_059523.2in vitro12135354   
7157TP531859NP_000537.3in vivo11297531   


Pathway Information


      
Pathway Name Pathway ID
RNA transport hsa03013


Structure Information


PDB ID1F59
Resolution2.8
MethodX-RAY DIFFRACTION
Chains A,B  
Molecule IMPORTIN BETA-1  
Model View



Domain Information




ID Location Description
cd00020365-479  ARM
cl22454365-479  ARM superfamily
pfam0381021-101  IBN_N
cl0427121-101  IBN_N superfamily
pfam13513380-435  HEAT_EZ
smart0091321-101  IBN_N
pfam02985410-439  HEAT
cl03819410-439  HEAT superfamily
pfam13513424-477  HEAT_EZ
COG52152-871  KAP95
pfam13646376-435  HEAT_2


Ontology Information


   
HPRD ID1430
Molecular ClassTransport/cargo protein
Molecular FunctionReceptor activity (GO:0004872)
Biological ProcessMetabolism (GO:0008152)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
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