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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
NPM1 4869 nucleophosmin (nucleolar phosphoprotein B23, numatrin)  5B23, NPM 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
24716928   2014Cell line : -

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : 57 normal human colon, 40 adenoma and 185 CRC samples

Stage : TNM Stage I-IV

ImmunohistochemistryUp-regulation-NPM expression can predict the survival of CRC patients.

23536448   2013Cell line : -

Source : Dongguan Shilong Peoples Hospital

Sample Type : CRC tumor and normal tissue

No. of Sample : 161

Stage : -

Tissue microarray, immunohistochemistryUp-regulation11-JulThe differential expression of NPM1 along the normal colon-adenoma-carcinoma progression and its involvement in resisting p53 related senescent growth arrest in CRC cell lines implicate its role in supporting CRC tumorigenesis.


Gene Details



Chromosome 5 - NC_000005.10 (171387648..171410884)

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Gene Type protein coding
Gene Family
Description This gene encodes a phosphoprotein which moves between the nucleus and the cytoplasm. The gene product is thought to be involved in several processes including regulation of the ARF/p53 pathway. A number of genes are fusion partners have been characterized, in particular the anaplastic lymphoma kinase gene on chromosome 2. Mutations in this gene are associated with acute myeloid leukemia. More than a dozen pseudogenes of this gene have been identified. Alternative splicing results in multiple transcript variants.  
Chromosome 5
Location 5q35.1
Start 171387648  
End 171410884  
Strand +  
Gene Sequence

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Length 23237  
OMIM ID 164040   
HGNC ID HGNC:7910   
Unigene ID Hs.557550   
Ensembl ID ENSG00000181163   
PharmGKB ID -   

mRNA Information


mRNA ID XM_005265920.2
Exon join(1..359,2404..2483,3658..3777,4059..4152,5063..5169, 5267..5331,12506..12563,17655..17756,18750..19525)  
mRNA Sequence

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Length 1347  



CDS Information


   
Location join(302..359,2404..2483,3658..3777,4059..4152,5063..5169, 5267..5331,12506..12563,13192..13278,17655..17756, 20053..20127,22880..22918)
CDS Sequence

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CCDS ID CCDS4376.1



Protein Information


      
Protein IDNP_001032827.1
Protein Namenucleophosmin (nucleolar phosphoprotein B23, numatrin)
Molecular Wt. (Da)28269
Protein Sequence

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Length 259  
Uniprot IDP05114
Ensembl Protein ID ENSP00000370125  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation125
SPhosphorylation227
SPhosphorylation125
SPhosphorylation198
TPhosphorylation219
TPhosphorylation234
TPhosphorylation237
TPhosphorylation205
TPhosphorylation208
TPhosphorylation199
SPhosphorylation4
SPhosphorylation4
SPhosphorylation70
SPhosphorylation70
SPhosphorylation254
SPhosphorylation225
SPhosphorylation125;-
SPhosphorylation125;-
SPhosphorylation125;-
SPhosphorylation70;-
SPhosphorylation70;-
SPhosphorylation70;-
SPhosphorylation254;-
SPhosphorylation225;-
SPhosphorylation254;-
YPhosphorylation67;-
YPhosphorylation67;-
YPhosphorylation67;-
SPhosphorylation10;-
SPhosphorylation10;-
SPhosphorylation10;-
SPhosphorylation4;-
TPhosphorylation95;-
TPhosphorylation95;-
TPhosphorylation95;-
SPhosphorylation139
SPhosphorylation139
SPhosphorylation139
SPhosphorylation260
SPhosphorylation231
SPhosphorylation243
SPhosphorylation214
SPhosphorylation243
SPhosphorylation195
SPhosphorylation195
SPhosphorylation137
SPhosphorylation137
SPhosphorylation137
TPhosphorylation234
TPhosphorylation237
TPhosphorylation199
TPhosphorylation75
TPhosphorylation75
TPhosphorylation75
KAcetylation32
KAcetylation32
KAcetylation32
KAcetylation257
KAcetylation228
KAcetylation273
KAcetylation244
KAcetylation267
KAcetylation238
KAcetylation257
KAcetylation150
KAcetylation150
KAcetylation150
KAcetylation27
KAcetylation27
KAcetylation27
YPhosphorylation17
YPhosphorylation17
YPhosphorylation17
SPhosphorylation43
SPhosphorylation43
SPhosphorylation43
TPhosphorylation78
TPhosphorylation78
TPhosphorylation78
SPhosphorylation88
SPhosphorylation88
SPhosphorylation88
TPhosphorylation279
TPhosphorylation250
SPhosphorylation106
SPhosphorylation112
SPhosphorylation106
SPhosphorylation112
SPhosphorylation106
SPhosphorylation112
TPhosphorylation46
TPhosphorylation46
TPhosphorylation46
SPhosphorylation227
SPhosphorylation242
SPhosphorylation213
SPhosphorylation242
SPhosphorylation222
TPhosphorylation219
SPhosphorylation222
SPhosphorylation217
SPhosphorylation217
SPhosphorylation218
SPhosphorylation218

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                                                                     
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
238ALK104NP_004295.2in vitro;in vivo11888936   
375ARF154NP_001649.1in vitro;in vivo1   463   657   415   684   370   
1017CDK2310NP_001789.2in vitro;in vivo1   127   899   116   376   870   
1647GADD45A528NP_001915.1in vitro;yeast 2-hybrid15644315   
4691NCL1245NP_005372.2in vitro;in vivo;yeast 2-hybrid105   038   778   620   867   
4839NOP21244NP_006161.2in vitro8089149   
5336PLCG22570AAH11772.1in vivo9819383   
6464SHC12780NP_001123512.1in vitro8633037   
7020TFAP2A128NP_003211.1in vitro;in vivo17318229   
7157TP531859NP_000537.3in vitro;in vivo1   208   034   816   376   880   
7514XPO13975NP_003391.1in vivo16041368   


Pathway Information


No matching records could be found.

Structure Information


PDB ID2LLH
Resolution
MethodSOLUTION NMR
Chains A  
Molecule Nucleophosmin  
Model View



Domain Information




ID Location Description
pfam0306613-119  Nucleoplasmin
cl0387013-119  Nucleoplasmin superfamily


Ontology Information


   
HPRD ID3206
Molecular ClassChaperone
Molecular FunctionMRNA binding (GO:0003729)
Biological ProcessRegulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism (GO:0019219)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO