Search results:
General Information
| Gene_Symbol | Gene_ID | Gene_Name | Chromosome | Alias |
|---|---|---|---|---|
| NPM1 | 4869 | nucleophosmin (nucleolar phosphoprotein B23, numatrin)  | 5 | B23, NPM  |
- Evidence
- Gene
- mRNA
- CDS
- Protein
- PTM
- Enzyme
- PPi
- Pathway
- Structural
- Domain
- Ontology
- SNP
- Drug
- External Links
Evidence Information
| Pubmed ID | Year | Sample Information | Techniques | Mechanism | Fold Change | Remark |
|---|---|---|---|---|---|---|
| 24716928    | 2014 | Cell line : - Source : - Sample Type : CRC tumor and normal tissue No. of Sample : 57 normal human colon, 40 adenoma and 185 CRC samples Stage : TNM Stage I-IV | Immunohistochemistry | Up-regulation | - | NPM expression can predict the survival of CRC patients. |
| 23536448    | 2013 | Cell line : - Source : Dongguan Shilong Peoples Hospital Sample Type : CRC tumor and normal tissue No. of Sample : 161 Stage : - | Tissue microarray, immunohistochemistry | Up-regulation | 11-Jul | The differential expression of NPM1 along the normal colon-adenoma-carcinoma progression and its involvement in resisting p53 related senescent growth arrest in CRC cell lines implicate its role in supporting CRC tumorigenesis. |
Gene Details

| Gene Type | protein coding |
|---|---|
| Gene Family | |
| Description | This gene encodes a phosphoprotein which moves between the nucleus and the cytoplasm. The gene product is thought to be involved in several processes including regulation of the ARF/p53 pathway. A number of genes are fusion partners have been characterized, in particular the anaplastic lymphoma kinase gene on chromosome 2. Mutations in this gene are associated with acute myeloid leukemia. More than a dozen pseudogenes of this gene have been identified. Alternative splicing results in multiple transcript variants.   | Chromosome | 5 |
| Location | 5q35.1 |
| Start | 171387648   |
| End | 171410884   |
| Strand | +   |
| Gene Sequence |    Download   Select all |
| Length | 23237   |
| OMIM ID | 164040    |
| HGNC ID | HGNC:7910    |
| Unigene ID | Hs.557550    |
| Ensembl ID | ENSG00000181163    |
| PharmGKB ID | -    |
mRNA Information
| mRNA ID | XM_005265920.2 |
|---|---|
| Exon | join(1..359,2404..2483,3658..3777,4059..4152,5063..5169, 5267..5331,12506..12563,17655..17756,18750..19525)   | mRNA Sequence |    Download   Select all |
| Length | 1347   |
CDS Information
| Location | join(302..359,2404..2483,3658..3777,4059..4152,5063..5169, 5267..5331,12506..12563,13192..13278,17655..17756, 20053..20127,22880..22918) |
|---|---|
| CDS Sequence |    Download   Select all |
| CCDS ID | CCDS4376.1 |    
Protein Information
| Protein ID | NP_001032827.1 |
|---|---|
| Protein Name | nucleophosmin (nucleolar phosphoprotein B23, numatrin) |
| Molecular Wt. (Da) | 28269 |
| Protein Sequence |    Download   Select all |
| Length | 259   |
| Uniprot ID | P05114 |    
| Ensembl Protein ID | ENSP00000370125   |    
Post-translational Modification Information (Source : HPRD)
| Residue | Type | site |
|---|---|---|
| S | Phosphorylation | 125 |
| S | Phosphorylation | 227 |
| S | Phosphorylation | 125 |
| S | Phosphorylation | 198 |
| T | Phosphorylation | 219 |
| T | Phosphorylation | 234 |
| T | Phosphorylation | 237 |
| T | Phosphorylation | 205 |
| T | Phosphorylation | 208 |
| T | Phosphorylation | 199 |
| S | Phosphorylation | 4 |
| S | Phosphorylation | 4 |
| S | Phosphorylation | 70 |
| S | Phosphorylation | 70 |
| S | Phosphorylation | 254 |
| S | Phosphorylation | 225 |
| S | Phosphorylation | 125;- |
| S | Phosphorylation | 125;- |
| S | Phosphorylation | 125;- |
| S | Phosphorylation | 70;- |
| S | Phosphorylation | 70;- |
| S | Phosphorylation | 70;- |
| S | Phosphorylation | 254;- |
| S | Phosphorylation | 225;- |
| S | Phosphorylation | 254;- |
| Y | Phosphorylation | 67;- |
| Y | Phosphorylation | 67;- |
| Y | Phosphorylation | 67;- |
| S | Phosphorylation | 10;- |
| S | Phosphorylation | 10;- |
| S | Phosphorylation | 10;- |
| S | Phosphorylation | 4;- |
| T | Phosphorylation | 95;- |
| T | Phosphorylation | 95;- |
| T | Phosphorylation | 95;- |
| S | Phosphorylation | 139 |
| S | Phosphorylation | 139 |
| S | Phosphorylation | 139 |
| S | Phosphorylation | 260 |
| S | Phosphorylation | 231 |
| S | Phosphorylation | 243 |
| S | Phosphorylation | 214 |
| S | Phosphorylation | 243 |
| S | Phosphorylation | 195 |
| S | Phosphorylation | 195 |
| S | Phosphorylation | 137 |
| S | Phosphorylation | 137 |
| S | Phosphorylation | 137 |
| T | Phosphorylation | 234 |
| T | Phosphorylation | 237 |
| T | Phosphorylation | 199 |
| T | Phosphorylation | 75 |
| T | Phosphorylation | 75 |
| T | Phosphorylation | 75 |
| K | Acetylation | 32 |
| K | Acetylation | 32 |
| K | Acetylation | 32 |
| K | Acetylation | 257 |
| K | Acetylation | 228 |
| K | Acetylation | 273 |
| K | Acetylation | 244 |
| K | Acetylation | 267 |
| K | Acetylation | 238 |
| K | Acetylation | 257 |
| K | Acetylation | 150 |
| K | Acetylation | 150 |
| K | Acetylation | 150 |
| K | Acetylation | 27 |
| K | Acetylation | 27 |
| K | Acetylation | 27 |
| Y | Phosphorylation | 17 |
| Y | Phosphorylation | 17 |
| Y | Phosphorylation | 17 |
| S | Phosphorylation | 43 |
| S | Phosphorylation | 43 |
| S | Phosphorylation | 43 |
| T | Phosphorylation | 78 |
| T | Phosphorylation | 78 |
| T | Phosphorylation | 78 |
| S | Phosphorylation | 88 |
| S | Phosphorylation | 88 |
| S | Phosphorylation | 88 |
| T | Phosphorylation | 279 |
| T | Phosphorylation | 250 |
| S | Phosphorylation | 106 |
| S | Phosphorylation | 112 |
| S | Phosphorylation | 106 |
| S | Phosphorylation | 112 |
| S | Phosphorylation | 106 |
| S | Phosphorylation | 112 |
| T | Phosphorylation | 46 |
| T | Phosphorylation | 46 |
| T | Phosphorylation | 46 |
| S | Phosphorylation | 227 |
| S | Phosphorylation | 242 |
| S | Phosphorylation | 213 |
| S | Phosphorylation | 242 |
| S | Phosphorylation | 222 |
| T | Phosphorylation | 219 |
| S | Phosphorylation | 222 |
| S | Phosphorylation | 217 |
| S | Phosphorylation | 217 |
| S | Phosphorylation | 218 |
| S | Phosphorylation | 218 |
Enzyme Information
No matching records could be found.
PPi Information
(Click to view network : Source STRING)      View   
| Interactant Gene ID (Source: HPRD) | Gene Symbol | HPRD ID | Ref Seq ID | Technique | References |
|---|---|---|---|---|---|
| 238 |    ALK |    104 |    NP_004295.2 |    in vitro;in vivo |    11888936    |
| 375 |    ARF1 |    54 |    NP_001649.1 |    in vitro;in vivo |    1   463   657   415   684   370    |
| 1017 |    CDK2 |    310 |    NP_001789.2 |    in vitro;in vivo |    1   127   899   116   376   870    |
| 1647 |    GADD45A |    528 |    NP_001915.1 |    in vitro;yeast 2-hybrid |    15644315    |
| 4691 |    NCL |    1245 |    NP_005372.2 |    in vitro;in vivo;yeast 2-hybrid |    105   038   778   620   867    |
| 4839 |    NOP2 |    1244 |    NP_006161.2 |    in vitro |    8089149    |
| 5336 |    PLCG2 |    2570 |    AAH11772.1 |    in vivo |    9819383    |
| 6464 |    SHC1 |    2780 |    NP_001123512.1 |    in vitro |    8633037    |
| 7020 |    TFAP2A |    128 |    NP_003211.1 |    in vitro;in vivo |    17318229    |
| 7157 |    TP53 |    1859 |    NP_000537.3 |    in vitro;in vivo |    1   208   034   816   376   880    |
| 7514 |    XPO1 |    3975 |    NP_003391.1 |    in vivo |    16041368    |
Pathway Information
No matching records could be found.
Structure Information
| PDB ID | 2LLH |
|---|---|
| Resolution | |
| Method | SOLUTION NMR |
| Chains | A   |
| Molecule | Nucleophosmin   |
| Model | View |
Domain Information
| ID | Location | Description |
|---|---|---|
| pfam03066 | 13-119  | Nucleoplasmin |
| cl03870 | 13-119  | Nucleoplasmin superfamily |
Ontology Information
| HPRD ID | 3206 |    
|---|---|
| Molecular Class | Chaperone |
| Molecular Function | MRNA binding (GO:0003729) |
| Biological Process | Regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism (GO:0019219)   |
Drug Information
No matching records could be found.
External Links
| ArrayExpress | GO |    
|---|---|
| ICGC | GO |    
| Cancer3D | GO |    
| COSMIC | GO |    
| NCG | GO |    
| TSGene | GO |    
| Tumor Gene Family of Databases | GO |    
| CCDB | GO |    
| G2SBC | GO |    
| Osteosarcoma Database | GO |    
| RCDB | GO |    
