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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
CD47 961 CD47 molecule  3IAP; OA3; MER6 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
23011546   2013Cell line : -

Source : Northern Germany (PopGen cohort).

Sample Type : -

No. of Sample : 613

Stage : -

GenotypingPolymorhpism-Three polymorphisms in CD47 were associated with distant metastasis are rs9879947 and rs3206652 in the 3'-UTR and the eSNP rs3804639.

Increased expression of this gene has recently been shown to be an indicator of poor prognosis in cancer patients.

Putative SNPs in gene from ECM pathway were genotyped


Gene Details



Chromosome: 3; NC_000003.11 (107761941..107809935, complement)

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Gene Type protein coding
Gene Family CD molecules, Immunoglobulin superfamily / Immunoglobulin-like domain containing
Description This gene encodes a membrane protein, which is involved in the increase in intracellular calcium concentration that occurs upon cell adhesion to extracellular matrix. The encoded protein is also a receptor for the C-terminal cell binding domain of thrombospondin, and it may play a role in membrane transport and signal transduction. This gene has broad tissue distribution, and is reduced in expression on Rh erythrocytes. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jul 2010]  
Chromosome 3
Location 3q13.1-q13
Start 108043094  
End 108091088  
Strand -  
Gene Sequence

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Length 47995  
OMIM ID 601028   
HGNC ID HGNC:1682   
Unigene ID Hs.446414    
Ensembl ID ENSG00000196776   
PharmGKB ID PA26222   

mRNA Information


mRNA ID NM_198793.2
Exon join(1..226,10745..11098,19907..19996,30237..30344, 31545..31637,32660..32752,33520..33612,39119..39150, 43797..47995)  
mRNA Sequence

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Length 5288  



CDS Information


   
Location join(181..226,10745..11098,19907..19996,30237..30344, 31545..31637,32660..32752,33520..33612,39119..39150, 43797..43805)
CDS Sequence

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CCDS ID CCDS43125.1



Protein Information


      
Protein IDNP_001768.1
Protein NameCD47 molecule
Molecular Wt. (Da)33469
Protein Sequence

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Length 323  
Uniprot IDQ06278
Ensembl Protein ID ENSP00000363832  



Post-translational Modification Information (Source : HPRD)


Residue Type site
CDisulfide Bridge33;263
CDisulfide Bridge33;263
NGlycosylation49
NGlycosylation49
NGlycosylation49
NGlycosylation72
NGlycosylation72
NGlycosylation72
NGlycosylation44
NGlycosylation44
NGlycosylation44

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                        
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
355FAS609NP_000034.1in vitro15917238   
2038EPB421517NP_000110.2in vivo12176912   
2770GNAI1756NP_002060.4in vivo11306274   
3685ITGAV1903NP_002201.1in vitro;in vivo10545994   
5029P2RY22499NP_788086.1in vivo11331301   
5747PTK22859NP_005598.3in vivo9169439   
6005RHAG1582NP_000315.2in vivo856   375   512   393   442   
7057THBS11765NP_003237.2in vivo9   169   439   855   056   210   000   000   


Pathway Information


      
Pathway Name Pathway ID
ECM-receptor interaction hsa04512


Structure Information


No matching records could be found.

Domain Information




ID Location Description
pfam04549143-300  CD47
cl04580143-300  CD47 superfamily
pfam0820420-136  V-set_CD47
cl0700420-136  V-set_CD47 superfamily
PHA0304223-287  PHA03042


Ontology Information


   
HPRD ID7537
Molecular ClassUnclassified
Molecular FunctionCatalytic activity (GO:0003824)
Biological ProcessMetabolism (GO:0008152); Energy pathways (GO:0006091)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO