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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
FAT1 2195 FAT tumor suppressor homolog 1 (Drosophila)  4FAT; ME5; CDHF7; CDHR8; hFat1 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
12915469   2003Cell line : -

Source : -

Sample Type : CRC tumor and Normal tissue

No. of Sample : 11

Stage : -

Differential methylation hybridization analysis Methylation-In 11 colon tumors where RNA was available, the methylation of LMX-1 and FAT was associated with the loss of their transcripts. There was also CpG island hypermethylation of these genes in colorectal adenomas, demonstrating that these epigenetic lesions occur early in colon tumorigenesis.

22968445   2012Cell line : -

Source : Department of Pathology of Wrocaw Medical University.

Sample Type : -

No. of Sample : -

Stage : -

Laser capture microdissection,FFPE-FASP,SAX fractionation,LC-MSMS,Label-free quantitation.Up-regulation-A list of genes including this gene are differentially expressed analysed by LC-MS/MS technique.

To compare the proteomes of colonic mucosa (normal or N) and colon cancer (cancer or C), we analyzed archival FFPE clinical samples originating from eight patients.


Gene Details



Chromosome: 4; NC_000004.11 (187508937..187644987, complement)

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Gene Type protein coding
Gene Family Cadherins / Cadherin-related
Description This gene is an ortholog of the Drosophila fat gene, which encodes a tumor suppressor essential for controlling cell proliferation during Drosophila development. The gene product is a member of the cadherin superfamily, a group of integral membrane proteins characterized by the presence of cadherin-type repeats. In addition to containing 34 tandem cadherin-type repeats, the gene product has five epidermal growth factor (EGF)-like repeats and one laminin A-G domain. This gene is expressed at high levels in a number of fetal epithelia. Its product probably functions as an adhesion molecule and/or signaling receptor, and is likely to be important in developmental processes and cell communication. Transcript variants derived from alternative splicing and/or alternative promoter usage exist, but they have not been fully described. [provided by RefSeq, Jul 2008]  
Chromosome 4
Location 4q35
Start 186587783  
End 186726915  
Strand -  
Gene Sequence

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Length 139133  
OMIM ID 600976   
HGNC ID HGNC:3595   
Unigene ID Hs.481371    
Ensembl ID ENSG00000083857   
PharmGKB ID PA28007   

mRNA Information


mRNA ID NM_005245.3
Exon join(3083..3252,17071..20353,63303..63617,87133..87194, 90002..90331,90681..90891,93093..93232,98153..98428, 98552..98762,105141..109208,109715..109911,112572..112725, 113574..113807,115141..115530,116901..117115, 117596..117733,120703..120846,122342..122539, 122939..123740,123882..124013,125490..125647, 126556..127018,128791..128944,129124..129234, 129745..130376,131090..131227,137696..139133)  
mRNA Sequence

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Length 14773  



CDS Information


   
Location join(17089..20353,63303..63617,87133..87194,90002..90331, 90681..90891,93093..93232,98153..98428,98552..98762, 105141..109208,109715..109911,112572..112725, 113574..113807,115141..115530,116901..117115, 117596..117733,120703..120846,122342..122539, 122939..123740,123882..124013,125490..125647, 126556..127018,128791..128944,129124..129234, 129745..130
CDS Sequence

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CCDS ID -



Protein Information


      
Protein IDNP_005236.2
Protein NameFAT tumor suppressor homolog 1 (Drosophila)
Molecular Wt. (Da)503885
Protein Sequence

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Length 4588  
Uniprot IDP22003
Ensembl Protein ID ENSP00000359866  



Post-translational Modification Information (Source : HPRD)


Residue Type site
TPhosphorylation464;-
YPhosphorylation468;-
SPhosphorylation4272;-
SPhosphorylation1496
NGlycosylation3715
NGlycosylation1939
NGlycosylation382
SPhosphorylation4473
TPhosphorylation192
YPhosphorylation212
TPhosphorylation3048
SPhosphorylation3082
SPhosphorylation4476

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                              
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
9454HOMER37270NP_004829.3in vitro16979624   
9456HOMER19211NP_004263.1in vitro16979624   


Pathway Information


No matching records could be found.

Structure Information


PDB ID1BNL
Resolution2.9
MethodX-RAY DIFFRACTION
Chains A,B,C  
Molecule COLLAGEN XVIII  
Model View



Domain Information




ID Location Description
cd113043234-3331  Cadherin_repeat
cl157863234-3331  CA_like superfamily
cd113041143-1241  Cadherin_repeat
cl157861143-1241  CA_like superfamily
cd113043339-3436  Cadherin_repeat
cl157863339-3436  CA_like superfamily
cd001103831-3983  LamG
cl228613831-3983  LamG superfamily
cd113043129-3226  Cadherin_repeat
cl157863129-3226  CA_like superfamily
cd113041042-1135  Cadherin_repeat
cl157861042-1135  CA_like superfamily
cd11304826-923  Cadherin_repeat
cl15786826-923  CA_like superfamily
cd113042813-2913  Cadherin_repeat
cl157862813-2913  CA_like superfamily
cd113043028-3121  Cadherin_repeat
cl157863028-3121  CA_like superfamily
cd113042287-2386  Cadherin_repeat
cl157862287-2386  CA_like superfamily
cd113041566-1658  Cadherin_repeat
cl157861566-1658  CA_like superfamily
cd113041769-1874  Cadherin_repeat
cl157861769-1874  CA_like superfamily
cd11304724-818  Cadherin_repeat
cl15786724-818  CA_like superfamily
cd113042922-3019  Cadherin_repeat
cl157862922-3019  CA_like superfamily
cd113041461-1558  Cadherin_repeat
cl157861461-1558  CA_like superfamily
cd11304932-1016  Cadherin_repeat
cl15786932-1016  CA_like superfamily
cd11304153-252  Cadherin_repeat
cl15786153-252  CA_like superfamily
cd113041671-1761  Cadherin_repeat
cl157861671-1761  CA_like superfamily
cd11304468-565  Cadherin_repeat
cl15786468-565  CA_like superfamily
cd113042496-2592  Cadherin_repeat
cl157862496-2592  CA_like superfamily
cd113042187-2279  Cadherin_repeat
cl157862187-2279  CA_like superfamily
cd113041363-1452  Cadherin_repeat
cl157861363-1452  CA_like superfamily
cd113042394-2488  Cadherin_repeat
cl157862394-2488  CA_like superfamily
cd113042708-2805  Cadherin_repeat
cl157862708-2805  CA_like superfamily
cd113043445-3536  Cadherin_repeat
cl157863445-3536  CA_like superfamily
cd113042601-2694  Cadherin_repeat
cl157862601-2694  CA_like superfamily
cd113041250-1344  Cadherin_repeat
cl157861250-1344  CA_like superfamily
cd113042085-2174  Cadherin_repeat
cl157862085-2174  CA_like superfamily
cd000544127-4163  EGF_CA
cl215044127-4163  EGF_CA superfamily
cd113041895-1970  Cadherin_repeat
cl157861895-1970  CA_like superfamily
cd11304371-459  Cadherin_repeat
cl15786371-459  CA_like superfamily
cd11304575-663  Cadherin_repeat
cl15786575-663  CA_like superfamily
cd1130438-144  Cadherin_repeat
cl1578638-144  CA_like superfamily
cd113041983-2077  Cadherin_repeat
cl157861983-2077  CA_like superfamily
cd113043561-3634  Cadherin_repeat
cl157863561-3634  CA_like superfamily
cd000544053-4088  EGF_CA
cl215044053-4088  EGF_CA superfamily
cd000544016-4050  EGF_CA
cl215044016-4050  EGF_CA superfamily
cd000544093-4125  EGF_CA
cl215044093-4125  EGF_CA superfamily
smart002823854-3985  LamG
pfam022103859-3985  Laminin_G_2
smart001123359-3438  CA
smart001123254-3333  CA
pfam000283340-3430  Cadherin
smart001121057-1137  CA
smart001121163-1243  CA
pfam000283235-3326  Cadherin
pfam000281147-1236  Cadherin
smart001123148-3228  CA
smart001122832-2916  CA
smart00112846-925  CA
pfam000281567-1658  Cadherin
smart001123046-3123  CA
smart001121795-1877  CA
pfam000283130-3221  Cadherin
smart00112742-820  CA
smart001122306-2388  CA
pfam000282288-2381  Cadherin
pfam00028827-918  Cadherin
smart001121585-1663  CA
pfam000282814-2909  Cadherin
pfam000283028-3116  Cadherin
pfam000281041-1130  Cadherin
pfam00028932-1017  Cadherin
pfam000543860-3987  Laminin_G_1
smart001121695-1763  CA
smart001122941-3021  CA
smart00112486-567  CA
smart001122208-2281  CA
pfam00028724-812  Cadherin
smart001121383-1454  CA
pfam00028154-248  Cadherin
smart00112951-1017  CA
pfam00028468-558  Cadherin
pfam000281672-1756  Cadherin
smart001121479-1560  CA
pfam000282923-3014  Cadherin
smart001122517-2594  CA
smart00112172-255  CA
pfam000281250-1344  Cadherin
pfam000282601-2694  Cadherin
smart001794127-4163  EGF_CA
pfam000281770-1870  Cadherin
smart001121276-1344  CA
pfam000281461-1552  Cadherin
pfam000281363-1442  Cadherin
pfam000282187-2259  Cadherin
smart001122730-2807  CA
pfam000283445-3536  Cadherin
pfam000281895-1969  Cadherin
pfam000282497-2587  Cadherin
pfam000282395-2483  Cadherin
smart001123463-3543  CA
smart001122413-2490  CA
smart001122620-2694  CA
pfam000282086-2174  Cadherin
smart001121902-1970  CA
pfam000282708-2799  Cadherin
smart001122104-2174  CA
cd000534130-4163  EGF
cd000313031-3121  CA_like
smart001122007-2079  CA
pfam00028372-454  Cadherin
smart0011268-147  CA
cd000534016-4050  EGF
smart001794016-4050  EGF_CA
smart001814130-4163  EGF
cd000534097-4125  EGF
pfam00028575-663  Cadherin
smart00112393-461  CA
smart00112592-663  CA
smart001794093-4125  EGF_CA
cd000534055-4088  EGF
smart001794053-4088  EGF_CA
pfam000281984-2060  Cadherin
pfam054443996-4116  DUF753
cl202943996-4116  DUF753 superfamily
pfam000084131-4161  EGF
pfam000084093-4123  EGF
pfam000084017-4046  EGF
cd000311079-1135  CA_like
pfam076454127-4158  EGF_CA
pfam0002839-140  Cadherin
smart001123568-3631  CA
cd000311465-1558  CA_like
pfam133853863-3982  Laminin_G_3
pfam000084056-4086  EGF
pfam129474124-4162  EGF_3
smart00112277-356  CA
cl15786277-356  CA_like superfamily
cd000313132-3226  CA_like
smart001814093-4125  EGF
smart001814016-4050  EGF
pfam062474022-4153  Plasmod_Pvs28


Ontology Information


   
HPRD ID210
Molecular ClassAdhesion molecule
Molecular FunctionReceptor binding (GO:0005102)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO