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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
HMGA2 8091 high mobility group AT-hook 2  12BABL, LIPO 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
21252160   2011Cell line : -

Source : City of Hope National Medical Center, 2nd affiliated hospital, Zhejiang University School of Medicine

Sample Type : -

No. of Sample : 89 CRCs from a training set and 191 CRCs

Stage : -

multiple tissue array (MTA), immunohistochemistry, Western blottingUp-regulation-HMGA2 may potentially serve as a biomarker for predicting aggressive CRC with poor survivability and as an indicator for better response of radiotherapy.

Overexpression of HMGA2 is associated with metastasis and unequivocally occurred in parallel with reduced survival rates of patients with CRC.


Gene Details



Chromosome 12 - NC_000012.12 (65824460..65966291)

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Gene Type protein coding
Gene Family High-mobility group / Canonical
Description This gene encodes a protein that belongs to the non-histone chromosomal high mobility group (HMG) protein family. HMG proteins function as architectural factors and are essential components of the enhancesome. This protein contains structural DNA-binding domains and may act as a transcriptional regulating factor. Identification of the deletion, amplification, and rearrangement of this gene that are associated with myxoid liposarcoma suggests a role in adipogenesis and mesenchymal differentiation. A gene knock out study of the mouse counterpart demonstrated that this gene is involved in diet-induced obesity. Alternate transcriptional splice variants, encoding different isoforms, have been characterized.  
Chromosome 12
Location 12q15
Start 65824460  
End 65966291  
Strand +  
Gene Sequence

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Length 141832  
OMIM ID 600698   
HGNC ID HGNC:5009   
Unigene ID Hs.505924   
Ensembl ID ENSG00000149948   
PharmGKB ID -   

mRNA Information


mRNA ID NM_003483.4
Exon join(1..922,3542..3628,14060..14110,126924..126956, 138786..141832)  
mRNA Sequence

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Length 1274  



CDS Information


   
Location join(812..922,3542..3628,14060..14110,126924..126956, 138786..138833)
CDS Sequence

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CCDS ID CCDS44936.1



Protein Information


      
Protein IDNP_001287848.1
Protein Namehigh mobility group AT-hook 2
Molecular Wt. (Da)16293
Protein Sequence

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Length 147  
Uniprot IDP29459
Ensembl Protein ID ENSP00000303231  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation44
SPhosphorylation59
SPhosphorylation44
SPhosphorylation59
SPhosphorylation44
TPhosphorylation40
TPhosphorylation40
TPhosphorylation40
SPhosphorylation14
SPhosphorylation14
SPhosphorylation14
SAcetylation2
SAcetylation2
SAcetylation2
SPhosphorylation102
SPhosphorylation101
TPhosphorylation100
SPhosphorylation105

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                           
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
1457CSNK2A1277NP_001886.1in vitro11034995   
1459CSNK2A2279NP_001887.1in vitro11034995   
4088SMAD34380NP_005893.1in vitro18832382   
4790NFKB11238NP_003989.2in vitro12693954   
5970RELA1241NP_068810.3in vitro12693954   


Pathway Information


            
Pathway Name Pathway ID
MicroRNAs in cancer hsa05206
Transcriptional misregulation in cancer hsa05202


Structure Information


No matching records could be found.

Domain Information




ID Location Description
PRK11642Mar-75  PRK11642
PRK14965Mar-93  PRK14965


Ontology Information


   
HPRD ID981
Molecular ClassTranscription factor
Molecular FunctionCytokine activity (GO:0005125)
Biological ProcessImmune response (GO:0006955)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO