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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
HOMER2 9455 homer scaffolding protein 2  15CPD; ACPD; DFNA68; VESL-2; HOMER-2 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
21636702   2011Cell line : -

Source : -

Sample Type : CRC tumor

No. of Sample : -

Stage : Duke Stage A-D

Methylated CpG island amplification coupled with microarray analysis,Methylation-specific PCR ,Real-time quantitative MSPMethylation--


Gene Details



NC_000015.9 (83517729..83654905, complement)

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Gene Type protein coding
Gene Family Homer scaffolding proteins
Description This gene encodes a member of the homer family of dendritic proteins. Members of this family regulate group 1 metabotrophic glutamate receptor function. The encoded protein is a postsynaptic density scaffolding protein. Alternative splicing results in multiple transcript variants. Two related pseudogenes have been identified on chromosome 14. [provided by RefSeq, Jun 2011]  
Chromosome 15
Location 15q24.3
Start 83517729  
End 83654905  
Strand -  
Gene Sequence

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Length 137177  
OMIM ID 604799   
HGNC ID HGNC:17513   
Unigene ID Hs.578443   
Ensembl ID ENSG00000103942   
PharmGKB ID PA134870500   

mRNA Information


mRNA ID ?NM_004839.3
Exon  
mRNA Sequence

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Length  



CDS Information


   
Location
CDS Sequence

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CCDS ID CCDS45334.1



Protein Information


      
Protein IDNP_004830.2
Protein Namehomer scaffolding protein 2
Molecular Wt. (Da)0
Protein Sequence

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Length 354  
Uniprot IDQ96PU5
Ensembl Protein ID ENSP00000256830  



Post-translational Modification Information (Source : HPRD)


No matching records could be found.

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                           
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
1627DBN1545NP_543157.1in vivo12676529   
2911GRM15129NP_000829.2in vitro9808458   
3708ITPR1925Q14643in vitro;in vivo9808459   
6261RYR11618NP_000531.2in vitro;in vivo12223488   
116986AGAP25687NP_001116244.1in vitro;in vivo14528310   


Pathway Information


            
Pathway Name Pathway ID
FoxO signaling pathway hsa04068
Glutamatergic synapse hsa04724


Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd012063-111  EVH1_Homer_Vesl
cl171713-111  PH-like superfamily
cd008375-107  EVH1_family
pfam005684-107  WH1
smart004611-105  WH1
cd012075-100  EVH1_Ena_VASP-like
pfam12325177-308  TMF_TATA_bd
cl22438177-308  TMF_TATA_bd superfamily
pfam08232221-303  Striatin
cl07022221-303  Striatin superfamily
pfam04124177-315  Dor1
cl19297177-315  Dor1 superfamily
pfam14772203-277  NYD-SP28
cl20695203-277  NYD-SP28 superfamily
pfam03961185-277  DUF342
cl19219185-277  DUF342 superfamily
TIGR0216893-333  SMC_prok_B
TIGR02169160-349  SMC_prok_A
TIGR02168163-327  SMC_prok_B
TIGR02168167-342  SMC_prok_B
COG1196163-350  Smc
TIGR04211217-313  SH3_and_anchor
COG1196162-331  Smc
COG1196162-349  Smc
TIGR02169162-320  SMC_prok_A
TIGR02168162-353  SMC_prok_B
TIGR02169186-351  SMC_prok_A
COG1196100-343  Smc
TIGR02169201-347  SMC_prok_A
COG0419162-341  SbcC
TIGR02168161-349  SMC_prok_B
COG1196186-340  Smc
COG2433208-275  COG2433
TIGR04211186-275  SH3_and_anchor
pfam12128173-314  DUF3584
COG119691-346  Smc
TIGR0216893-350  SMC_prok_B
pfam04156231-340  IncA
PRK02224101-314  PRK02224
TIGR02169192-344  SMC_prok_A
pfam1212893-340  DUF3584
COG1196158-350  Smc
COG1196161-342  Smc
COG1196162-353  Smc
pfam04111208-322  APG6
pfam08317225-328  Spc7
TIGR0216893-314  SMC_prok_B
TIGR02168219-350  SMC_prok_B
TIGR02169241-340  SMC_prok_A
PRK03918184-350  PRK03918
PRK03918217-323  PRK03918
TIGR04523164-340  Mplasa_alph_rch
PRK02224162-349  PRK02224
TIGR04211188-306  SH3_and_anchor
PRK03918211-323  PRK03918
PRK03918181-314  PRK03918
pfam07888180-344  CALCOCO1
COG1579161-331  COG1579
pfam09726124-316  Macoilin
TIGR03346224-297  chaperone_ClpB
TIGR02169197-354  SMC_prok_A
PTZ00121101-336  PTZ00121
PLN02939164-326  PLN02939
PRK12704229-333  PRK12704
TIGR04211230-330  SH3_and_anchor
TIGR0216896-328  SMC_prok_B
PRK03918201-350  PRK03918
COG1196242-350  Smc
pfam10234220-331  Cluap1
COG2433219-326  COG2433
COG041992-354  SbcC
COG1579185-315  COG1579
COG2433169-340  COG2433
COG1196223-353  Smc
PRK03918224-316  PRK03918
TIGR00618177-323  sbcc
COG5185203-340  HEC1
pfam09730181-332  BicD
pfam09730230-322  BicD
COG041994-333  SbcC
COG0419184-345  SbcC
TIGR02169101-334  SMC_prok_A
pfam05483149-328  SCP-1
PRK03918229-336  PRK03918
COG0419162-342  SbcC
PRK03918181-333  PRK03918
PRK01156223-353  PRK01156
pfam03962220-317  Mnd1
PRK01156220-351  PRK01156
pfam04156201-315  IncA
PRK02224224-349  PRK02224
pfam15066166-314  CAGE1
PRK03918221-351  PRK03918
PRK05431225-330  PRK05431
pfam10186219-330  Atg14
PRK03918162-314  PRK03918
pfam13949188-322  ALIX_LYPXL_bnd
pfam0555793-349  MAD
PRK00252225-307  alaS
pfam05667229-292  DUF812
TIGR03319231-314  RNase_Y
TIGR01069158-307  mutS2
TIGR01843173-335  type_I_hlyD
pfam05667221-293  DUF812
TIGR04523160-327  Mplasa_alph_rch
pfam05911189-313  DUF869
pfam05557172-312  MAD
PRK01156205-314  PRK01156
PRK14844250-348  PRK14844
TIGR02169219-349  SMC_prok_A
pfam12128177-350  DUF3584
pfam10146223-314  zf-C4H2
pfam07227203-328  DUF1423
pfam11559222-270  ADIP
pfam01576221-342  Myosin_tail_1
PRK11448219-294  hsdR
pfam05622162-319  HOOK
PRK03992219-260  PRK03992


Ontology Information


   
HPRD ID9207
Molecular ClassNot Available
Molecular FunctionGuanyl-nucleotide exchange factor activity (GO:0005085)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO