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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
LAMB3 3914 Laminin, beta 3  1LAM5; LAMNB1; BM600-125KDA 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
22930170   2012Cell line : KM 12C, KM 12SM , HT 29

Source : ATCC

Sample Type : -

No. of Sample : -

Stage : -

Microarray analysis,Real time RT-PCR and Flow cytometryUp-regulation-Gene differentially expressed and analysed bye by Microarray.


Gene Details



Chromosome: 1; NC_000001.10 (209788215..209825820, complement)

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Gene Type protein coding
Gene Family Laminins
Description The product encoded by this gene is a laminin that belongs to a family of basement membrane proteins. This protein is a beta subunit laminin, which together with an alpha and a gamma subunit, forms laminin-5. Mutations in this gene cause epidermolysis bullosa junctional Herlitz type, and generalized atrophic benign epidermolysis bullosa, diseases that are characterized by blistering of the skin. Multiple alternatively spliced transcript variants that encode the same protein have been found for this gene. [provided by RefSeq, Jul 2008]  
Chromosome 1
Location 1q32
Start 209614870  
End 209652475  
Strand -  
Gene Sequence

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Length 37606  
OMIM ID 150310   
HGNC ID HGNC:6490   
Unigene ID Hs.497636    
Ensembl ID ENSG00000196878   
PharmGKB ID -   

mRNA Information


mRNA ID NM_000228.2
Exon join(1..107,1495..1559,2358..2512,13828..13942, 14495..14568,17838..18029,19343..19406,19700..19893, 21741..21861,22551..22739,24286..24441,24897..25093, 25498..25609,26450..26828,28476..28636,28751..28971, 29297..29494,29796..29940,33817..34024,34428..34569, 34890..35066,35852..36005,37069..37606)  
mRNA Sequence

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Length 4093  



CDS Information


   
Location join(1532..1559,2358..2512,13828..13942,14495..14568, 17838..18029,19343..19406,19700..19893,21741..21861, 22551..22739,24286..24441,24897..25093,25498..25609, 26450..26828,28476..28636,28751..28971,29297..29494, 29796..29940,33817..34024,34428..34569,34890..35066, 35852..36005,37069..37205)
CDS Sequence

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CCDS ID CCDS1487.1



Protein Information


      
Protein IDNP_000219.2
Protein NameLaminin, beta 3
Molecular Wt. (Da)127645
Protein Sequence

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Length 1172  
Uniprot IDP48509
Ensembl Protein ID ENSP00000324101  



Post-translational Modification Information (Source : HPRD)


Residue Type site
TPhosphorylation1170
TPhosphorylation1170

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                             
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
649BMP1209NP_006120.1in vitro;in vivo10806203   
1294COL7A1358NP_000085.1in vitro;in vivo9989793   
3918LAMC21031NP_005553.2in vivo10964684   


Pathway Information


                                          
Pathway Name Pathway ID
Amoebiasis hsa05146
ECM-receptor interaction hsa04512
Focal adhesion hsa04510
Pathways in cancer hsa05200
PI3K-Akt signaling pathway hsa04151
Small cell lung cancer hsa05222
Toxoplasmosis hsa05145


Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd00055378-429  EGF_Lam
cl22875378-429  EGF_Lam superfamily
cd00055533-582  EGF_Lam
cl22875533-582  EGF_Lam superfamily
cd00055430-479  EGF_Lam
cl22875430-479  EGF_Lam superfamily
cd00055480-532  EGF_Lam
cl22875480-532  EGF_Lam superfamily
cd00055249-304  EGF_Lam
cl22875249-304  EGF_Lam superfamily
cd00055315-369  EGF_Lam
cl22875315-369  EGF_Lam superfamily
smart0013620-248  LamNT
cl0280620-248  Laminin_N superfamily
pfam0005526-248  Laminin_N
pfam00053379-428  Laminin_EGF
smart00180379-428  EGF_Lam
smart00180534-576  EGF_Lam
pfam00053431-478  Laminin_EGF
pfam00053534-571  Laminin_EGF
smart00180431-478  EGF_Lam
pfam00053481-534  Laminin_EGF
smart00180481-531  EGF_Lam
pfam00053250-307  Laminin_EGF
cd11386862-1076  MCP_signal
cl21547862-1076  MCP_signal superfamily
pfam00053316-367  Laminin_EGF
cd00176894-1092  SPEC
cl02488894-1092  SPEC superfamily
smart00180278-302  EGF_Lam
smart00180316-369  EGF_Lam
smart00283844-1071  MA
TIGR02168820-1115  SMC_prok_B
pfam13514602-1166  AAA_27
TIGR02169826-1162  SMC_prok_A
COG1196817-1135  Smc
COG1196832-1157  Smc
COG0419590-1115  SbcC
PRK02224834-1158  PRK02224
TIGR02169853-1158  SMC_prok_A
TIGR02168645-1162  SMC_prok_B
COG1196837-1132  Smc
COG1196933-1162  Smc
COG1196600-970  Smc
TIGR02169933-1162  SMC_prok_A
pfam12128836-1025  DUF3584
TIGR02168832-1162  SMC_prok_B
TIGR02168958-1162  SMC_prok_B
COG4372827-1112  COG4372
pfam04012951-1127  PspA_IM30
TIGR02168601-1114  SMC_prok_B
COG4942827-1137  EnvC
TIGR02168836-1119  SMC_prok_B
COG0419845-1159  SbcC
pfam10174836-1158  Cast
COG0840840-1082  Tar
COG4477909-1162  EzrA
COG1842951-1129  PspA
pfam06008820-1061  Laminin_I
pfam01576838-1133  Myosin_tail_1
COG3206867-1113  GumC
TIGR02168934-1159  SMC_prok_B
TIGR00606620-1160  rad50
pfam01576838-1164  Myosin_tail_1
pfam12128837-1135  DUF3584
TIGR02956830-1063  TMAO_torS
COG0845832-1075  AcrA
COG4372833-1025  COG4372
COG4477843-1165  EzrA
TIGR00618936-1157  sbcc
PRK03918930-1162  PRK03918
pfam10174847-1161  Cast
pfam12128618-1140  DUF3584
pfam05557843-1158  MAD
TIGR02680836-1078  TIGR02680
COG4372942-1156  COG4372
pfam04012970-1158  PspA_IM30
COG1196994-1159  Smc
pfam10174949-1162  Cast
pfam15070834-1100  GOLGA2L5
TIGR01843931-1109  type_I_hlyD
COG43721005-1164  COG4372
COG4477862-1124  EzrA
pfam10174835-1161  Cast
COG1579932-1168  COG1579
PRK06975825-964  PRK06975
TIGR02680641-1094  TIGR02680
pfam00015832-989  MCPsignal
pfam07111831-1092  HCR
pfam07111839-1134  HCR
PRK10246828-1020  PRK10246
PRK02224824-1159  PRK02224
pfam04012930-1077  PspA_IM30
TIGR02977934-1128  phageshock_pspA
pfam07888838-1133  CALCOCO1
PRK04863843-1155  mukB
pfam13514609-1118  AAA_27
COG1538845-1079  TolC
TIGR03007845-1100  pepcterm_ChnLen
PRK144731008-1125  PRK14473
COG1538837-1027  TolC
pfam00529830-1011  HlyD
COG1842850-1070  PspA
pfam06818928-1091  Fez1


Ontology Information


   
HPRD ID305
Molecular ClassExtracellular matrix protein
Molecular FunctionProtein tyrosine/serine/threonine phosphatase activity (GO:0008138)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO