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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
LTBP4 8425 Latent transforming growth factor beta binding protein 4  19ARCL1C; LTBP-4; LTBP4L; LTBP4S 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
20089989   2010Cell line : -

Source : VU University Medical Center, Amsterdam, The Netherlands.

Sample Type : CRC tumor and normal tissue

No. of Sample : -

Stage : -

Biochemical isolation to nano-LC-MS/MS analysis Up-regulation-This genes are differenitially expressed between colorectal adenoma and Colorectal cancer tissue.

CRC tissue was collected at the VU University Medical Center, Amsterdam, The Netherlands.


Gene Details



Chromosome: 19; NC_000019.9 (41099072..41135725)

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Gene Type protein coding
Gene Family Latent transforming growth factor, beta binding proteins
Description The protein encoded by this gene binds transforming growth factor beta (TGFB) as it is secreted and targeted to the extracellular matrix. TGFB is biologically latent after secretion and insertion into the extracellular matrix, and sheds TGFB and other proteins upon activation. Defects in this gene may be a cause of cutis laxa and severe pulmonary, gastrointestinal, and urinary abnormalities. Three transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, May 2010]  
Chromosome 19
Location 19q13.1-q1
Start 40592888  
End 40629820  
Strand +  
Gene Sequence

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Length 36933  
OMIM ID 604710   
HGNC ID HGNC:6717   
Unigene ID Hs.466766    
Ensembl ID ENSG00000090006   
PharmGKB ID PA30480   

mRNA Information


mRNA ID XM_011527387.1
Exon join(1..294,6310..6368,6534..6669,7181..7290,12148..12339, 12518..12765,12842..12944,13346..13420,13517..13639, 14478..14642,15333..15482,15597..15716,16643..16774, 16859..16984,17645..17770,18265..18507,18972..19097, 19186..19305,20178..20309,20517..20642,21029..21151, 21428..21559,24002..24133,24213..24338,26460..26606, 29514..29780,30063..30134,30717..30845,31049..31195, 32970..33122,34088..34468,34818..34970,36509..36931)  
mRNA Sequence

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Length 5291  



CDS Information


   
Locationjoin(279..294,6310..6368,6515..6669,7181..7290, 12148..12339,12518..12765,12842..12944,13346..13420, 13517..13639,14478..14642,15333..15482,15597..15716, 16643..16774,16859..16984,17645..17770,18265..18507, 18972..19097,19186..19305,20178..20309,20517..20642, 21029..21151,21428..21559,24002..24133,24213..24338, 26460..26606,29514..29780,30063..30134,30717..30845,
CDS Sequence

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CCDS ID CCDS74368.1



Protein Information


      
Protein IDNP_001036009.1
Protein NameLatent transforming growth factor beta binding protein 4
Molecular Wt. (Da)170635
Protein Sequence

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Length 1624  
Uniprot IDQ9H8V3
Ensembl Protein ID ENSP00000232458  



Post-translational Modification Information (Source : HPRD)


No matching records could be found.

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

               
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
7040TGFB11821NP_000651.3in vivo9660815   


Pathway Information


No matching records could be found.

Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd00054834-867  EGF_CA
cl21504834-867  EGF_CA superfamily
cd000541049-1084  EGF_CA
cl215041049-1084  EGF_CA superfamily
cd00054878-910  EGF_CA
cl21504878-910  EGF_CA superfamily
cd00054671-708  EGF_CA
cl21504671-708  EGF_CA superfamily
cd00054920-951  EGF_CA
cl21504920-951  EGF_CA superfamily
cd00054357-391  EGF_CA
cl21504357-391  EGF_CA superfamily
cd00054752-787  EGF_CA
cl21504752-787  EGF_CA superfamily
cd00054710-744  EGF_CA
cl21504710-744  EGF_CA superfamily
cd000541296-1325  EGF_CA
cl215041296-1325  EGF_CA superfamily
cd00054587-619  EGF_CA
cl21504587-619  EGF_CA superfamily
cd00054629-670  EGF_CA
cl21504629-670  EGF_CA superfamily
cd000541574-1612  EGF_CA
cl215041574-1612  EGF_CA superfamily
smart00179878-914  EGF_CA
smart00179834-867  EGF_CA
smart001791049-1090  EGF_CA
smart00179920-955  EGF_CA
pfam00683418-458  TB
cl02926418-458  TB superfamily
smart00179357-387  EGF_CA
pfam006831360-1401  TB
cl029261360-1401  TB superfamily
pfam07645834-868  EGF_CA
smart00179671-708  EGF_CA
smart00179752-793  EGF_CA
pfam07645752-792  EGF_CA
pfam006831193-1234  TB
cl029261193-1234  TB superfamily
smart00179587-623  EGF_CA
smart00179629-670  EGF_CA
pfam07645878-918  EGF_CA
pfam126621071-1094  cEGF
pfam12662567-590  cEGF
cl21504567-590  EGF_CA superfamily
smart00179710-744  EGF_CA
pfam076451049-1089  EGF_CA
pfam07645920-959  EGF_CA
smart00181360-392  EGF
pfam129471059-1089  EGF_3
smart001791296-1325  EGF_CA
smart001791574-1608  EGF_CA
pfam07645710-750  EGF_CA
pfam12947838-866  EGF_3
smart00179961-999  EGF_CA
cl21504961-999  EGF_CA superfamily
smart001791005-1048  EGF_CA
cl215041005-1048  EGF_CA superfamily
pfam12662651-674  cEGF


Ontology Information


   
HPRD ID570
Molecular ClassExtracellular matrix protein
Molecular FunctionPeptide hormone (GO:0005180)
Biological ProcessCell development (GO:0048468)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO