Search results:


General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
NOTCH1 4851 Notch homolog 1, translocation-associated (Drosophila)  9hN1; TAN1 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
22863622   2012Cell line : -

Source : The Jackson Laboratories, Rosa-Notch1 mice (a gift from D. Melton, Harvard Stem Cell Institute, Harvard University, Boston, Massachusetts, USA).

Sample Type : Mouse model

No. of Sample : -

Stage : -

Immunohistochemistry, In situ hybridization, Microarray analysis, Western blot and RT-PCR analyses.Chromatin modification-Notch both suppresses tumor progression and enhances tumor initiation.

18777195   2009Cell line : -

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : 237 colorectal cancer samples with matched adjacent normal tissues and a series of 46 normal colorectal specimens

Stage : TNM Stage I-IV

Immunohistochemistry, real-time polymerase chain reaction, and Western blottingUp-regulation-Notch1 expression correlated closely with colorectal cancer and may play an oncogenic role during colonic carcinogenesis.

20058190   2010Cell line : -

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : 223 colorectal cancer and adjacent tissues

Stage : TNM Stage I-IV

Immunohistochemistry, Kaplan-Meier and Cox proportional-hazards regression.Up-regulation-Notch1 might serve as a novel prognostic marker that is independent of, and additive to, the TNM staging system.

21378202   2011Cell line : -

Source : Xijing Hospital of Digestive Diseases and Tianjin Union Medicine Centre.

Sample Type : Case control study

No. of Sample : 1003 CRC patients

Stage : -

ImmunohistochemistryUp-regulation-Notch1 and Notch2 may be independent adverse prognostic predictors for patients with colorectal cancer.

Notch1 and Notch2 were proved to be inversely correlated with tumor differentiation, depth of invasion, lymph node metastases, distant metastasis.

Notch 1 positive CRC patient show poor survival.

21771876   2011Cell line : -

Source : Colorectal Cancer Registry, Tianjin Union Medicine Centre.

Sample Type : CRC tumor and normal tissue

No. of Sample : 941

Stage : -

Tissue microarray, immunohistochemistryUp-regulation-Notch1 is an independent predictor of prognosis for patients with colorectal cancer.

Targeting Notch1 and nuclear factor Kappa B (NF-kappa B) might be a promising strategy for colorectal cancer treatment.

24312514   2013Cell line : -

Source : Second Affiliated Hospital of Harbin Medical University, China

Sample Type : -

No. of Sample : 220 patients with ulcerative colitis, 232 patients with colorectal adenoma and 449 patients with colorectal cancer

Stage : -

ImmunohistochemistryUp-regulation-Expression level of Notch1 was gradually increased from precancerous lesions to cancer. It might play as an oncogene in the CRC development, and might be potentially used as a biomarker for prognosis of CRCs.

Colorectal cancer patients with high expression levels of Notch1 showed lower overall survival (OS) and disease-free survival (DFS) rates than those patients with low Notch1 expression.


Gene Details



Chromosome: 9; NC_000009.11 (139388896..139440238, complement)

View Larger Image
   
Gene Type protein coding
Gene Family Ankyrin repeat domain containing
Description This gene encodes a member of the Notch family. Members of this Type 1 transmembrane protein family share structural characteristics including an extracellular domain consisting of multiple epidermal growth factor-like (EGF) repeats, and an intracellular domain consisting of multiple, different domain types. Notch family members play a role in a variety of developmental processes by controlling cell fate decisions. The Notch signaling network is an evolutionarily conserved intercellular signaling pathway which regulates interactions between physically adjacent cells. In Drosophilia, notch interaction with its cell-bound ligands (delta, serrate) establishes an intercellular signaling pathway that plays a key role in development. Homologues of the notch-ligands have also been identified in human, but precise interactions between these ligands and the human notch homologues remain to be determined. This protein is cleaved in the trans-Golgi network, and presented on the cell surface as a heterodimer. This protein functions as a receptor for membrane bound ligands, and may play multiple roles during development. [provided by RefSeq, Jul 2008]  
Chromosome 9
Location 9q34.3
Start 136494444  
End 136545786  
Strand -  
Gene Sequence

   Download   Select all

Length 51343  
OMIM ID 190198   
HGNC ID HGNC:7881   
Unigene ID Hs.495473   
Ensembl ID ENSG00000148400   
PharmGKB ID -   

mRNA Information


mRNA ID NM_017617.3
Exon join(1..61,1685..1763,21808..22070,22599..22937, 26222..26344,26963..27196,27495..27650,27850..28035, 28402..28515,29693..29806,30071..30304,30387..30497, 31085..31277,32250..32395,32653..32766,34516..34635, 34982..35134,35826..36054,36716..36917,37402..37555, 37648..37832,38350..38482,38814..39071,39148..39260, 39906..40477,40683..41114,42457..42605,43299..43515, 43699..43786,43874..44039,44940..45235,46528..46675, 46791..46888,48229..51343)  
mRNA Sequence

   Download   Select all

Length 9309  



CDS Information


   
Location join(1..61,1685..1763,21808..22070,22599..22937, 26222..26344,26963..27196,27495..27650,27850..28035, 28402..28515,29693..29806,30071..30304,30387..30497, 31085..31277,32250..32395,32653..32766,34516..34635, 34982..35134,35826..36054,36716..36917,37402..37555, 37648..37832,38350..38482,38814..39071,39148..39260, 39906..40477,40683..41114,42457..42605,43299..43515,
CDS Sequence

   Download   Select all

CCDS ID CCDS43905.1



Protein Information


      
Protein IDNP_060087.3
Protein NameNotch homolog 1, translocation-associated (Drosophila)
Molecular Wt. (Da)270694
Protein Sequence

   Download   Select all

Length 2555  
Uniprot IDO15247
Ensembl Protein ID ENSP00000358460  



Post-translational Modification Information (Source : HPRD)


Residue Type site
AProteolytic Cleavage1720
GProteolytic Cleavage1753
RProteolytic Cleavage1664
AProteolytic Cleavage1720
TPhosphorylation1861

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                                                                                                                                                
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
331XIAP2094NP_001158.2in vitro;in vivo17318174   
867CBL1320NP_005179.2in vivo11777909   
2033EP3004078NP_001420.2in vitro;in vivo11604511   
2647BLOC1S13263NP_001478.1in vivo10747963   
3516RBPJ920NP_005340.2in vitro;in vivo;yeast 2-hybrid874   939   491   110   401   000   000   000   000   000   
3932LCK1080NP_005347.3in vivo14583609   
4208MEF2C2809NP_002388.2in vivo10082551   
4790NFKB11238NP_003989.2in vitro;in vivo86   423   131   141   866   200   000   000   
4856NOV1291NP_002505.1in vivo12050162   
5664PSEN22860NP_000438.2in vivo11518718   
5949RBP31581NP_002891.1in vivo11511084   
5970RELA1241NP_068810.3in vivo8642313   
8328GFI1B5088NP_004179.3yeast 2-hybrid16713569   
9253NUMBL4931NP_004747.1in vitro;yeast 2-hybrid9169836   
23509POFUT16319NP_056167.1in vivo12697902   
51176LEF11075NP_057353.1in vitro;in vivo11604490   


Pathway Information


                              
Pathway Name Pathway ID
Dorso-ventral axis formation hsa04320
MicroRNAs in cancer hsa05206
Notch signaling pathway hsa04330
Prion diseases hsa05020
Thyroid hormone signaling pathway hsa04919


Structure Information


PDB ID1PB5
Resolution-
Methodsolution NMR
Chains A  
Molecule Neurogenic locus notch homolog protein 1  
Model View



Domain Information




ID Location Description
cd002041922-2034  ANK
cl025291922-2034  ANK superfamily
cd002041989-2113  ANK
cl025291989-2113  ANK superfamily
cd00054869-905  EGF_CA
cl21504869-905  EGF_CA superfamily
cd00054412-450  EGF_CA
cl21504412-450  EGF_CA superfamily
cd00054678-713  EGF_CA
cl21504678-713  EGF_CA superfamily
cd000541021-1057  EGF_CA
cl215041021-1057  EGF_CA superfamily
cd00054528-564  EGF_CA
cl21504528-564  EGF_CA superfamily
cd000541184-1219  EGF_CA
cl215041184-1219  EGF_CA superfamily
cd00054295-332  EGF_CA
cl21504295-332  EGF_CA superfamily
cd00054452-488  EGF_CA
cl21504452-488  EGF_CA superfamily
cd00054945-981  EGF_CA
cl21504945-981  EGF_CA superfamily
cd000541146-1180  EGF_CA
cl215041146-1180  EGF_CA superfamily
cd00054178-216  EGF_CA
cl21504178-216  EGF_CA superfamily
cd00054791-827  EGF_CA
cl21504791-827  EGF_CA superfamily
cd00054907-943  EGF_CA
cl21504907-943  EGF_CA superfamily
cd000541238-1265  EGF_CA
cl215041238-1265  EGF_CA superfamily
cd00054755-789  EGF_CA
cl21504755-789  EGF_CA superfamily
cd00054988-1019  EGF_CA
cl21504988-1019  EGF_CA superfamily
cd00054490-526  EGF_CA
cl21504490-526  EGF_CA superfamily
cd00054566-601  EGF_CA
cl21504566-601  EGF_CA superfamily
cd00054257-293  EGF_CA
cl21504257-293  EGF_CA superfamily
cd00054603-639  EGF_CA
cl21504603-639  EGF_CA superfamily
cd000541267-1305  EGF_CA
cl215041267-1305  EGF_CA superfamily
cd00054717-750  EGF_CA
cl21504717-750  EGF_CA superfamily
cd00054142-175  EGF_CA
cl21504142-175  EGF_CA superfamily
cd00054335-370  EGF_CA
cl21504335-370  EGF_CA superfamily
cd000541064-1094  EGF_CA
cl215041064-1094  EGF_CA superfamily
cd00054223-255  EGF_CA
cl21504223-255  EGF_CA superfamily
pfam119362480-2541  DUF3454
cl133872480-2541  DUF3454 superfamily
pfam068161566-1621  NOD
cl084491566-1621  NOD superfamily
pfam076841670-1731  NODP
cl066391670-1731  NODP superfamily
cd002041875-2015  ANK
cd002041873-1981  ANK
cd002042022-2117  ANK
pfam000661485-1522  Notch
cl024191485-1522  Notch superfamily
pfam000661525-1561  Notch
cl024191525-1561  Notch superfamily
smart000041485-1521  NL
smart000041521-1561  NL
smart00179869-905  EGF_CA
smart000041442-1479  NL
cl024191442-1479  Notch superfamily
smart00179412-450  EGF_CA
smart00179678-710  EGF_CA
smart001791183-1219  EGF_CA
smart00179945-981  EGF_CA
smart001791021-1057  EGF_CA
smart00179295-332  EGF_CA
smart00179452-488  EGF_CA
smart00179528-564  EGF_CA
smart00179178-216  EGF_CA
pfam000231928-1959  Ank
pfam000661452-1480  Notch
pfam07645412-444  EGF_CA
smart001791146-1180  EGF_CA
smart00179791-827  EGF_CA
pfam07645295-327  EGF_CA
smart00179907-943  EGF_CA
smart00179603-639  EGF_CA
smart00179755-789  EGF_CA
smart00179490-526  EGF_CA
smart001791238-1265  EGF_CA
smart00179992-1019  EGF_CA
pfam000232062-2092  Ank
cd000531026-1055  EGF
smart00179566-601  EGF_CA
pfam136061928-1956  Ank_3
smart00179257-293  EGF_CA
smart00179335-364  EGF_CA
cd00053681-712  EGF
cd00053298-330  EGF
pfam000081029-1055  EGF
smart00179716-751  EGF_CA
pfam07645178-208  EGF_CA
pfam000231994-2026  Ank
cd000531233-1263  EGF
cd00053415-448  EGF
pfam00008685-712  EGF
pfam127961932-2025  Ank_2
pfam136372063-2113  Ank_4
COG06661931-2121  ANKYR
COG06661920-2092  ANKYR
COG06661918-2093  ANKYR
PHA028781917-2089  PHA02878
PHA030951873-2081  PHA03095
pfam127961930-1991  Ank_2
PHA030951873-2033  PHA03095
PHA030951914-2086  PHA03095
PHA028751922-2113  PHA02875
COG06661873-1982  ANKYR
PHA030951945-2086  PHA03095
PHA028761922-2116  PHA02876
pfam138571917-1968  Ank_5
PHA031001873-2026  PHA03100
PHA031001932-2113  PHA03100
PLN031921924-2062  PLN03192
pfam127961874-1958  Ank_2
pfam136371930-1981  Ank_4
PHA028741922-2110  PHA02874
pfam127962047-2113  Ank_2
PHA028761910-2114  PHA02876
pfam138571947-2002  Ank_5
PHA028741942-2086  PHA02874
PHA031001914-2095  PHA03100
pfam06247427-561  Plasmod_Pvs28
PHA028741970-2115  PHA02874
PTZ003221922-1990  PTZ00322
PHA028781909-2116  PHA02878
PTZ003222047-2116  PTZ00322
PHA029461879-2033  PHA02946
pfam062471241-1397  Plasmod_Pvs28
PHA028741930-2113  PHA02874
PHA029171922-1970  PHA02917
PLN031921979-2113  PLN03192
PHA027431913-2030  PHA02743
PTZ003221933-2004  PTZ00322


Ontology Information


   
HPRD ID3101
Molecular ClassCell surface receptor
Molecular FunctionReceptor activity (GO:0004872)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO