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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
SMO 6608 Smoothened homolog (Drosophila)  7Gx; SMOH; FZD11 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
17683069   2007Cell line : Colo 320, HCT 116, Smo, Colo 205, HT 29 and WiDr,Colo 205, Colo 320, Caco 2, SW 480,293 T

Source : ATCC

Sample Type : -

No. of Sample : -

Stage : -

RT-PCR, Western blotting , Transfection experiments.Down-regulation--

15072830   2004Cell line : -

Source : -

Sample Type : -

No. of Sample : -

Stage : -

-Methylation-Expression of wild-type SMO is required for expression of GLI3 by a mechanism that is independent of conventional Hedgehog signalling.

21438024   2011Cell line : -

Source : -

Sample Type : CRC tumor and normal tissue

No. of Sample : 77 CRC patient

Stage : -

Promoter microarrays, real time RT-PCR, Methylation Specific PCR Methylation-The frequency of their promoter methylation was assessed in the larger group of patients (n = 77): KCNK12, GPR101, BARX1, CNTFR , SYT6, SMO (21%), EPHA5, and GSPT2.

22901214   2012Cell line : -

Source : Department of Gastroenterological Surgery of this hospital.

Sample Type : CRC tumor and normal tissue

No. of Sample : 43 cancer tissue and adjascent tissue sample

Stage : -

real time RT-PCR, ImmunohistochemistryUp-regulation-Positive rates and intensities of mRNA and protein expression of Hh signaling pathway related genes SHH, SMO, GLI1 were found to be significantly increased in CRC tissues.


Gene Details



Chromosome: 7; NC_000007.13 (128828713..128853386)

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Gene Type protein coding
Gene Family GPCR / Class F : Frizzled receptors
Description The protein encoded by this gene is a G protein-coupled receptor that interacts with the patched protein, a receptor for hedgehog proteins. The encoded protein tranduces signals to other proteins after activation by a hedgehog protein/patched protein complex. [provided by RefSeq, Jul 2010]  
Chromosome 7
Location 7q32.3
Start 129188872  
End 129213546  
Strand +  
Gene Sequence

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Length 24675  
OMIM ID 601500   
HGNC ID HGNC:11119   
Unigene ID Hs.437846    
Ensembl ID ENSG00000128602   
PharmGKB ID -   

mRNA Information


mRNA ID NM_005631.4
Exon join(1..611,14513..14718,16332..16541,16739..16911, 17279..17498,17593..17716,19888..19980,20418..20526, 21492..21677,22094..22242,22765..22899,23153..24674)  
mRNA Sequence

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Length 3772  



CDS Information


   
Locationjoin(281..611,14513..14718,16332..16541,16739..16911, 17279..17498,17593..17716,19888..19980,20418..20526, 21492..21677,22094..22242,22765..22899,23153..23580)
CDS Sequence

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CCDS ID CCDS5811.1



Protein Information


      
Protein IDNP_005622.1
Protein NameSmoothened homolog (Drosophila)
Molecular Wt. (Da)83322
Protein Sequence

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Length 787  
Uniprot IDO15528
Ensembl Protein ID ENSP00000228606  



Post-translational Modification Information (Source : HPRD)


No matching records could be found.

Enzyme Information


   
EC1.5.3.16
Namespermine oxidase
PAOh1/SMO
PAOh1 (ambiguous)
AtPAO1
AtPAO4
SMO
mSMO
SMO(PAOh1)
SMO/PAOh1
SMO5
mSMOmu
ClassOxidoreductases; Acting on the CH-NH group of donors; With oxygen as acceptor
Sysnamespermidine:oxygen oxidoreductase (spermidine-forming)  
Substratespermine [CPD:C00750]; O2 [CPD:C00007]; H2O  
Productspermidine [CPD:C00315]; 3-aminopropanal [CPD:C05665]; H2O2  
Reaction (IUBMB)



PPi Information


(Click to view network : Source STRING)      View   

               
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
5727PTCH13200NP_000255.2in vivo9811851   


Pathway Information


                        
Pathway Name Pathway ID
Basal cell carcinoma hsa05217
Hedgehog signaling pathway hsa04340
Pathways in cancer hsa05200
Proteoglycans in cancer hsa05205


Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd0745166-196  CRD_SMO
cl0244766-196  CRD_FZ superfamily
pfam01534220-554  Frizzled
cl21587220-554  7tm_2 superfamily
smart0006370-181  FRI
pfam0139270-180  Fz
cd0706670-181  CRD_FZ
cd0744970-176  CRD_FZ3
cd0744870-176  CRD_FZ4
cd0746366-175  CRD_FZ9
cd07447117-178  CRD_Carboxypeptidase_Z
cd07461117-176  CRD_FZ8
cd0744495-175  CRD_SFRP5
cd0744395-177  CRD_SFRP1
cd0745670-181  CRD_FZ5_like
cd0745768-177  CRD_FZ9_like
cd0744266-169  CRD_SFRP4
cd0744570-187  CRD_corin_1
cd07446117-177  CRD_SFRP2
cd07458118-176  CRD_FZ1_like
cd07453125-176  CRD_crescent
cd0746066-190  CRD_FZ5
cd0744167-169  CRD_SFRP3
pfam00002313-433  7tm_2
cd07465117-175  CRD_FZ1
cd07452118-177  CRD_sizzled
cd07466117-189  CRD_FZ7


Ontology Information


   
HPRD ID2902
Molecular ClassIntegral membrane protein
Molecular FunctionProtein serine/threonine kinase activity (GO:0004674)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO